Wall clock time and date at job start Tue Mar 31 2020 02:27:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86797 * 119.99772 * 2 1
4 4 H 1.48504 * 109.47289 * 269.99601 * 3 2 1
5 5 H 1.48504 * 109.47431 * 29.99802 * 3 2 1
6 6 H 1.48509 * 109.47375 * 149.99727 * 3 2 1
7 7 C 1.37875 * 120.00122 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00012 * 180.02562 * 7 2 1
9 9 C 1.50698 * 119.99880 * 359.97438 * 7 2 1
10 10 O 1.42905 * 110.64054 * 59.30146 * 9 7 2
11 11 C 1.55158 * 110.72071 * 182.43864 * 9 7 2
12 12 C 1.55393 * 101.36604 * 153.94900 * 11 9 7
13 13 N 1.47433 * 104.87396 * 323.02138 * 12 11 9
14 14 C 1.34770 * 125.64428 * 204.16622 * 13 12 11
15 15 O 1.21511 * 119.99652 * 179.97438 * 14 13 12
16 16 O 1.34636 * 120.00707 * 359.95842 * 14 13 12
17 17 C 1.45195 * 117.00426 * 179.97438 * 16 14 13
18 18 C 1.53170 * 109.54544 * 269.82329 * 17 16 14
19 19 C 1.53105 * 109.15769 * 183.23835 * 18 17 16
20 20 O 1.42902 * 109.48481 * 57.47621 * 19 18 17
21 21 C 1.42900 * 114.09789 * 298.88764 * 20 19 18
22 22 C 1.53086 * 109.41498 * 61.15922 * 21 20 19
23 23 C 1.47023 * 108.70199 * 24.13006 * 13 12 11
24 24 H 0.97000 * 119.99972 * 0.02562 * 1 2 3
25 25 H 0.96696 * 114.00036 * 300.69922 * 10 9 7
26 26 H 1.09003 * 111.00778 * 272.12092 * 11 9 7
27 27 H 1.08998 * 110.99967 * 35.97524 * 11 9 7
28 28 H 1.08994 * 110.34653 * 204.17011 * 12 11 9
29 29 H 1.09005 * 110.44158 * 81.91997 * 12 11 9
30 30 H 1.08998 * 109.54068 * 30.00274 * 17 16 14
31 31 H 1.09000 * 109.52502 * 303.05567 * 18 17 16
32 32 H 1.09000 * 109.52505 * 63.24446 * 18 17 16
33 33 H 1.08994 * 109.40784 * 297.49726 * 19 18 17
34 34 H 1.09002 * 109.49257 * 177.50728 * 19 18 17
35 35 H 1.08998 * 109.48451 * 301.17361 * 21 20 19
36 36 H 1.09005 * 109.49040 * 181.14475 * 21 20 19
37 37 H 1.09003 * 109.52662 * 182.48789 * 22 21 20
38 38 H 1.09006 * 109.52657 * 62.29742 * 22 21 20
39 39 H 1.09001 * 109.87979 * 239.52809 * 23 13 12
40 40 H 1.09001 * 109.87860 * 118.35698 * 23 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5467 1.4403 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4991 0.0017
10 8 0.4075 -2.5948 -1.1478
11 6 2.2323 -3.6994 0.0639
12 6 1.3425 -4.7884 0.7250
13 7 0.5237 -4.0605 1.7116
14 6 -0.0421 -4.5964 2.8111
15 8 -0.6992 -3.8984 3.5578
16 8 0.1203 -5.9052 3.0820
17 6 -0.5170 -6.4137 4.2834
18 6 0.4486 -6.2925 5.4662
19 6 -0.2013 -6.9046 6.7101
20 8 -0.5452 -8.2664 6.4470
21 6 -1.4827 -8.4361 5.3820
22 6 -0.8836 -7.8876 4.0844
23 6 0.4274 -2.6530 1.2976
24 1 -0.4850 0.8400 -0.0004
25 1 -0.2495 -1.8883 -1.2134
26 1 2.5456 -4.0002 -0.9359
27 1 3.0947 -3.4670 0.6886
28 1 1.9627 -5.5337 1.2228
29 1 0.7048 -5.2633 -0.0207
30 1 -1.4195 -5.8381 4.4889
31 1 1.3716 -6.8259 5.2392
32 1 0.6701 -5.2411 5.6494
33 1 -1.1018 -6.3443 6.9612
34 1 0.4985 -6.8611 7.5447
35 1 -2.4001 -7.8959 5.6157
36 1 -1.7062 -9.4960 5.2596
37 1 -1.6140 -7.9759 3.2801
38 1 0.0117 -8.4543 3.8284
39 1 0.8370 -2.0089 2.0758
40 1 -0.6140 -2.3928 1.1081
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000828044412.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:27:19
Heat of formation + Delta-G solvation = -179.338157 kcal
Electronic energy + Delta-G solvation = -23487.418476 eV
Core-core repulsion = 19881.111345 eV
Total energy + Delta-G solvation = -3606.307131 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.145 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.36722 -39.16382 -37.85759 -35.90451 -34.38353 -32.74494 -32.24662 -31.37264
-30.07777 -27.89553 -25.69373 -24.56447 -23.81882 -22.73882 -20.57710 -20.15881
-19.56451 -17.55118 -17.23695 -16.93575 -16.35363 -15.97661 -15.77596 -15.16524
-14.97002 -14.55344 -14.25819 -13.84450 -13.68684 -13.31095 -12.96931 -12.91130
-12.61419 -12.35314 -11.82420 -11.67453 -11.56162 -11.49506 -11.16680 -11.09011
-10.86191 -10.68911 -10.64402 -10.51921 -10.28413 -10.18937 -10.03978 -9.87341
-9.38660 -8.72341 -8.39677 -8.02597 -6.33848 -4.42600 2.50454 3.18958
3.26508 3.29081 3.31470 3.61230 4.21432 4.30036 4.53198 4.58061
4.71051 4.92499 4.94302 4.98963 5.22578 5.25403 5.39761 5.42139
5.44326 5.60397 5.74088 5.76291 5.76846 5.88691 5.95714 6.03569
6.12865 6.45566 6.63612 6.75152 6.79489 6.86858 6.90991 7.18548
7.30241 7.68491 7.94552 8.12875 8.60547 8.79853 9.25466 9.35300
10.74114
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.032086 B = 0.003756 C = 0.003591
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 872.448557 B = 7452.706466 C = 7795.851647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.070 3.930
3 Si 0.905 3.095
4 H -0.277 1.277
5 H -0.284 1.284
6 H -0.272 1.272
7 C -0.538 4.538
8 H 0.069 0.931
9 C 0.248 3.752
10 O -0.584 6.584
11 C -0.117 4.117
12 C 0.106 3.894
13 N -0.594 5.594
14 C 0.654 3.346
15 O -0.582 6.582
16 O -0.366 6.366
17 C 0.107 3.893
18 C -0.174 4.174
19 C 0.066 3.934
20 O -0.383 6.383
21 C 0.066 3.934
22 C -0.153 4.153
23 C 0.120 3.880
24 H 0.271 0.729
25 H 0.384 0.616
26 H 0.079 0.921
27 H 0.078 0.922
28 H 0.065 0.935
29 H 0.065 0.935
30 H 0.087 0.913
31 H 0.080 0.920
32 H 0.083 0.917
33 H 0.055 0.945
34 H 0.100 0.900
35 H 0.054 0.946
36 H 0.102 0.898
37 H 0.083 0.917
38 H 0.084 0.916
39 H 0.069 0.931
40 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.858 -13.409 7.798 15.536
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.133 4.133
3 Si 0.733 3.267
4 H -0.203 1.203
5 H -0.210 1.210
6 H -0.197 1.197
7 C -0.576 4.576
8 H 0.087 0.913
9 C 0.208 3.792
10 O -0.393 6.393
11 C -0.155 4.155
12 C -0.017 4.017
13 N -0.334 5.334
14 C 0.408 3.592
15 O -0.472 6.472
16 O -0.280 6.280
17 C 0.051 3.949
18 C -0.212 4.212
19 C -0.010 4.010
20 O -0.302 6.302
21 C -0.011 4.011
22 C -0.191 4.191
23 C -0.001 4.001
24 H 0.081 0.919
25 H 0.236 0.764
26 H 0.098 0.902
27 H 0.096 0.904
28 H 0.084 0.916
29 H 0.083 0.917
30 H 0.105 0.895
31 H 0.099 0.901
32 H 0.102 0.898
33 H 0.073 0.927
34 H 0.118 0.882
35 H 0.073 0.927
36 H 0.120 0.880
37 H 0.102 0.898
38 H 0.102 0.898
39 H 0.087 0.913
40 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -0.837 -13.822 8.129 16.057
hybrid contribution -0.127 1.792 0.000 1.797
sum -0.964 -12.030 8.129 14.551
Atomic orbital electron populations
1.69638 1.06043 1.28085 1.49669 1.25089 0.95072 0.99872 0.93253
0.86371 0.79785 0.82254 0.78335 1.20315 1.20969 1.19657 1.21513
0.93771 0.89945 1.52376 0.91327 1.19509 0.86182 0.92305 0.81221
1.86104 1.51688 1.54985 1.46533 1.22852 0.97442 0.94850 1.00392
1.22397 0.93260 0.95167 0.90830 1.47619 1.51638 1.12634 1.21499
1.17683 0.79394 0.80513 0.81602 1.90939 1.44936 1.61204 1.50122
1.86305 1.71776 1.25212 1.44733 1.22514 0.96160 0.94128 0.82136
1.22655 1.00159 1.03179 0.95189 1.22563 0.99538 0.82324 0.96626
1.87927 1.63148 1.26046 1.53054 1.22572 0.91352 1.01849 0.85307
1.22332 1.03118 0.94254 0.99391 1.23146 1.02040 0.75691 0.99179
0.91862 0.76444 0.90223 0.90388 0.91610 0.91654 0.89538 0.90088
0.89801 0.92678 0.88192 0.92731 0.87994 0.89838 0.89772 0.91292
0.91453
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -23.48 10.96 55.43 0.61 -22.87 16
2 C 0.07 1.81 5.27 -17.82 -0.09 1.71 16
3 Si 0.91 20.14 29.54 -169.99 -5.02 15.12 16
4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16
7 C -0.54 -13.83 8.11 -34.44 -0.28 -14.11 16
8 H 0.07 1.73 7.77 -52.49 -0.41 1.32 16
9 C 0.25 5.94 0.85 -89.94 -0.08 5.86 16
10 O -0.58 -14.51 13.07 -35.23 -0.46 -14.97 16
11 C -0.12 -2.33 6.26 -24.32 -0.15 -2.48 16
12 C 0.11 1.96 6.93 -2.26 -0.02 1.94 16
13 N -0.59 -12.69 3.33 -175.99 -0.59 -13.28 16
14 C 0.65 13.71 8.60 54.05 0.46 14.17 16
15 O -0.58 -13.61 15.93 -19.28 -0.31 -13.92 16
16 O -0.37 -6.36 9.42 -40.31 -0.38 -6.74 16
17 C 0.11 1.50 2.54 -26.55 -0.07 1.43 16
18 C -0.17 -2.17 5.79 -26.59 -0.15 -2.32 16
19 C 0.07 0.68 6.84 37.21 0.25 0.94 16
20 O -0.38 -4.23 10.77 -35.23 -0.38 -4.61 16
21 C 0.07 0.60 6.84 37.20 0.25 0.86 16
22 C -0.15 -1.64 5.80 -26.59 -0.15 -1.79 16
23 C 0.12 2.89 5.38 -3.06 -0.02 2.87 16
24 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16
25 H 0.38 9.79 7.23 45.56 0.33 10.12 16
26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16
27 H 0.08 1.48 8.04 -51.93 -0.42 1.07 16
28 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16
29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
30 H 0.09 1.31 7.16 -51.93 -0.37 0.94 16
31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16
33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16
34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16
35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16
37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16
39 H 0.07 1.79 7.82 -51.93 -0.41 1.38 16
40 H 0.07 1.76 8.00 -51.93 -0.42 1.34 16
LS Contribution 327.33 15.07 4.93 4.93
Total: -1.00 -29.25 327.33 -7.10 -36.35
By element:
Atomic # 1 Polarization: 16.37 SS G_CDS: -5.47 Total: 10.90 kcal
Atomic # 6 Polarization: 9.11 SS G_CDS: -0.04 Total: 9.08 kcal
Atomic # 7 Polarization: -36.17 SS G_CDS: 0.02 Total: -36.15 kcal
Atomic # 8 Polarization: -38.71 SS G_CDS: -1.53 Total: -40.23 kcal
Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -29.25 -7.10 -36.35 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000828044412.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -142.992 kcal
(2) G-P(sol) polarization free energy of solvation -29.248 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.240 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.346 kcal
(6) G-S(sol) free energy of system = (1) + (5) -179.338 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds