Wall clock time and date at job start Tue Mar 31 2020 02:27:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86797 * 119.99772 * 2 1
4 4 H 1.48504 * 109.47289 * 269.99601 * 3 2 1
5 5 H 1.48504 * 109.47431 * 29.99802 * 3 2 1
6 6 H 1.48509 * 109.47375 * 149.99727 * 3 2 1
7 7 C 1.37875 * 120.00122 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00012 * 180.02562 * 7 2 1
9 9 C 1.50698 * 119.99880 * 359.97438 * 7 2 1
10 10 O 1.42905 * 110.64054 * 59.30146 * 9 7 2
11 11 C 1.55158 * 110.72071 * 182.43864 * 9 7 2
12 12 C 1.55393 * 101.36604 * 153.94900 * 11 9 7
13 13 N 1.47433 * 104.87396 * 323.02138 * 12 11 9
14 14 C 1.34770 * 125.64428 * 204.16622 * 13 12 11
15 15 O 1.21511 * 119.99652 * 179.97438 * 14 13 12
16 16 O 1.34636 * 120.00707 * 359.95842 * 14 13 12
17 17 C 1.45195 * 117.00426 * 179.97438 * 16 14 13
18 18 C 1.53170 * 109.54544 * 269.82329 * 17 16 14
19 19 C 1.53105 * 109.15769 * 183.23835 * 18 17 16
20 20 O 1.42902 * 109.48481 * 57.47621 * 19 18 17
21 21 C 1.42900 * 114.09789 * 298.88764 * 20 19 18
22 22 C 1.53086 * 109.41498 * 61.15922 * 21 20 19
23 23 C 1.47023 * 108.70199 * 24.13006 * 13 12 11
24 24 H 0.97000 * 119.99972 * 0.02562 * 1 2 3
25 25 H 0.96696 * 114.00036 * 300.69922 * 10 9 7
26 26 H 1.09003 * 111.00778 * 272.12092 * 11 9 7
27 27 H 1.08998 * 110.99967 * 35.97524 * 11 9 7
28 28 H 1.08994 * 110.34653 * 204.17011 * 12 11 9
29 29 H 1.09005 * 110.44158 * 81.91997 * 12 11 9
30 30 H 1.08998 * 109.54068 * 30.00274 * 17 16 14
31 31 H 1.09000 * 109.52502 * 303.05567 * 18 17 16
32 32 H 1.09000 * 109.52505 * 63.24446 * 18 17 16
33 33 H 1.08994 * 109.40784 * 297.49726 * 19 18 17
34 34 H 1.09002 * 109.49257 * 177.50728 * 19 18 17
35 35 H 1.08998 * 109.48451 * 301.17361 * 21 20 19
36 36 H 1.09005 * 109.49040 * 181.14475 * 21 20 19
37 37 H 1.09003 * 109.52662 * 182.48789 * 22 21 20
38 38 H 1.09006 * 109.52657 * 62.29742 * 22 21 20
39 39 H 1.09001 * 109.87979 * 239.52809 * 23 13 12
40 40 H 1.09001 * 109.87860 * 118.35698 * 23 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5467 1.4403 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4991 0.0017
10 8 0.4075 -2.5948 -1.1478
11 6 2.2323 -3.6994 0.0639
12 6 1.3425 -4.7884 0.7250
13 7 0.5237 -4.0605 1.7116
14 6 -0.0421 -4.5964 2.8111
15 8 -0.6992 -3.8984 3.5578
16 8 0.1203 -5.9052 3.0820
17 6 -0.5170 -6.4137 4.2834
18 6 0.4486 -6.2925 5.4662
19 6 -0.2013 -6.9046 6.7101
20 8 -0.5452 -8.2664 6.4470
21 6 -1.4827 -8.4361 5.3820
22 6 -0.8836 -7.8876 4.0844
23 6 0.4274 -2.6530 1.2976
24 1 -0.4850 0.8400 -0.0004
25 1 -0.2495 -1.8883 -1.2134
26 1 2.5456 -4.0002 -0.9359
27 1 3.0947 -3.4670 0.6886
28 1 1.9627 -5.5337 1.2228
29 1 0.7048 -5.2633 -0.0207
30 1 -1.4195 -5.8381 4.4889
31 1 1.3716 -6.8259 5.2392
32 1 0.6701 -5.2411 5.6494
33 1 -1.1018 -6.3443 6.9612
34 1 0.4985 -6.8611 7.5447
35 1 -2.4001 -7.8959 5.6157
36 1 -1.7062 -9.4960 5.2596
37 1 -1.6140 -7.9759 3.2801
38 1 0.0117 -8.4543 3.8284
39 1 0.8370 -2.0089 2.0758
40 1 -0.6140 -2.3928 1.1081
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000828044412.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:27:19
Heat of formation + Delta-G solvation = -200.305432 kcal
Electronic energy + Delta-G solvation = -23488.327686 eV
Core-core repulsion = 19881.111345 eV
Total energy + Delta-G solvation = -3607.216340 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.145 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.81896 -40.34516 -39.41057 -37.43303 -36.20853 -34.22551 -33.82199 -32.21232
-31.77618 -29.69047 -27.39968 -25.83645 -24.68975 -24.31499 -21.84288 -21.44810
-21.36776 -19.26119 -19.01765 -18.25247 -17.66546 -17.20664 -17.00393 -16.85805
-16.30250 -15.86040 -15.62643 -15.15921 -14.99742 -14.82984 -14.65627 -14.51327
-13.97344 -13.53273 -13.48133 -13.36752 -12.94105 -12.86675 -12.59730 -12.39913
-12.36311 -12.28943 -12.27411 -12.13179 -11.81088 -11.52183 -11.32383 -11.22562
-10.76764 -10.66818 -10.35490 -9.77311 -8.28976 -6.44916 0.99551 1.42611
1.44511 1.53826 1.65079 2.37031 2.78964 2.93742 2.97964 3.57094
3.58636 3.74999 3.85492 3.91805 3.98180 4.08322 4.18200 4.26346
4.37671 4.42931 4.57193 4.60261 4.64802 4.67636 4.73014 4.90176
4.93535 4.96339 4.97540 5.06863 5.15229 5.28459 5.36261 5.44829
5.71905 6.01127 6.12573 6.45641 6.62836 7.14718 7.26076 7.34147
8.77551
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.032086 B = 0.003756 C = 0.003591
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 872.448557 B = 7452.706466 C = 7795.851647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C 0.027 3.973
3 Si 0.965 3.035
4 H -0.272 1.272
5 H -0.285 1.285
6 H -0.267 1.267
7 C -0.558 4.558
8 H 0.071 0.929
9 C 0.235 3.765
10 O -0.586 6.586
11 C -0.110 4.110
12 C 0.111 3.889
13 N -0.601 5.601
14 C 0.655 3.345
15 O -0.614 6.614
16 O -0.358 6.358
17 C 0.094 3.906
18 C -0.170 4.170
19 C 0.070 3.930
20 O -0.392 6.392
21 C 0.065 3.935
22 C -0.145 4.145
23 C 0.137 3.863
24 H 0.272 0.728
25 H 0.378 0.622
26 H 0.095 0.905
27 H 0.086 0.914
28 H 0.097 0.903
29 H 0.072 0.928
30 H 0.071 0.929
31 H 0.085 0.915
32 H 0.064 0.936
33 H 0.059 0.941
34 H 0.119 0.881
35 H 0.062 0.938
36 H 0.130 0.870
37 H 0.092 0.908
38 H 0.088 0.912
39 H 0.041 0.959
40 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.023 -15.087 8.158 17.151
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.174 4.174
3 Si 0.790 3.210
4 H -0.198 1.198
5 H -0.211 1.211
6 H -0.191 1.191
7 C -0.596 4.596
8 H 0.089 0.911
9 C 0.194 3.806
10 O -0.395 6.395
11 C -0.148 4.148
12 C -0.011 4.011
13 N -0.341 5.341
14 C 0.410 3.590
15 O -0.507 6.507
16 O -0.272 6.272
17 C 0.038 3.962
18 C -0.208 4.208
19 C -0.006 4.006
20 O -0.311 6.311
21 C -0.011 4.011
22 C -0.183 4.183
23 C 0.016 3.984
24 H 0.081 0.919
25 H 0.228 0.772
26 H 0.114 0.886
27 H 0.105 0.895
28 H 0.115 0.885
29 H 0.091 0.909
30 H 0.089 0.911
31 H 0.103 0.897
32 H 0.083 0.917
33 H 0.077 0.923
34 H 0.137 0.863
35 H 0.080 0.920
36 H 0.148 0.852
37 H 0.110 0.890
38 H 0.107 0.893
39 H 0.059 0.941
40 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 0.060 -15.551 8.486 17.716
hybrid contribution -0.443 2.260 -0.076 2.304
sum -0.382 -13.290 8.410 15.733
Atomic orbital electron populations
1.69738 1.07136 1.28666 1.50064 1.25819 0.95804 1.02854 0.92924
0.85444 0.78647 0.78518 0.78389 1.19759 1.21110 1.19138 1.21835
0.94092 0.91082 1.52571 0.91132 1.19712 0.86649 0.93719 0.80511
1.86095 1.51671 1.54657 1.47058 1.22851 0.96906 0.93315 1.01716
1.22530 0.93085 0.94973 0.90496 1.47592 1.52239 1.11928 1.22291
1.17747 0.78726 0.81460 0.81040 1.90910 1.46219 1.62372 1.51153
1.86315 1.71814 1.22719 1.46307 1.22975 0.95781 0.95867 0.81538
1.22637 1.00200 1.02288 0.95696 1.22603 1.00028 0.82113 0.95900
1.87924 1.63585 1.26057 1.53542 1.22768 0.91011 1.03533 0.83827
1.22366 1.03664 0.91446 1.00805 1.22683 0.99930 0.77121 0.98704
0.91898 0.77213 0.88638 0.89534 0.88453 0.90935 0.91109 0.89683
0.91736 0.92314 0.86279 0.92016 0.85249 0.88984 0.89321 0.94067
0.94484
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -49.10 10.96 21.45 0.24 -48.86 16
2 C 0.03 1.39 5.27 84.65 0.45 1.84 16
3 Si 0.96 41.34 29.54 68.60 2.03 43.37 16
4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16
5 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16
6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16
7 C -0.56 -28.77 8.11 25.60 0.21 -28.56 16
8 H 0.07 3.52 7.77 -2.91 -0.02 3.50 16
9 C 0.23 11.26 0.85 -10.35 -0.01 11.25 16
10 O -0.59 -29.38 13.07 -148.98 -1.95 -31.32 16
11 C -0.11 -4.20 6.26 32.16 0.20 -4.00 16
12 C 0.11 3.88 6.93 87.02 0.60 4.48 16
13 N -0.60 -25.66 3.33 -941.11 -3.13 -28.79 16
14 C 0.66 27.59 8.60 129.79 1.12 28.71 16
15 O -0.61 -29.52 15.93 19.81 0.32 -29.21 16
16 O -0.36 -12.11 9.42 -55.46 -0.52 -12.63 16
17 C 0.09 2.55 2.54 30.71 0.08 2.63 16
18 C -0.17 -4.09 5.79 30.69 0.18 -3.92 16
19 C 0.07 1.32 6.84 72.02 0.49 1.81 16
20 O -0.39 -7.65 10.77 -148.98 -1.60 -9.26 16
21 C 0.07 1.01 6.84 72.01 0.49 1.50 16
22 C -0.15 -2.78 5.80 30.68 0.18 -2.60 16
23 C 0.14 6.81 5.38 86.73 0.47 7.28 16
24 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16
25 H 0.38 19.76 7.23 -74.06 -0.54 19.22 16
26 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16
27 H 0.09 3.14 8.04 -2.39 -0.02 3.12 16
28 H 0.10 2.83 8.04 -2.39 -0.02 2.81 16
29 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16
30 H 0.07 2.16 7.16 -2.39 -0.02 2.14 16
31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16
33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
34 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16
35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
36 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16
37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16
38 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16
39 H 0.04 2.23 7.82 -2.39 -0.02 2.21 16
40 H 0.04 2.02 8.00 -2.39 -0.02 2.00 16
Total: -1.00 -63.37 327.33 0.33 -63.04
By element:
Atomic # 1 Polarization: 32.74 SS G_CDS: 0.51 Total: 33.24 kcal
Atomic # 6 Polarization: 15.97 SS G_CDS: 4.45 Total: 20.42 kcal
Atomic # 7 Polarization: -74.75 SS G_CDS: -2.90 Total: -77.65 kcal
Atomic # 8 Polarization: -78.67 SS G_CDS: -3.76 Total: -82.42 kcal
Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal
Total: -63.37 0.33 -63.04 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000828044412.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -137.267 kcal
(2) G-P(sol) polarization free energy of solvation -63.365 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.633 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.038 kcal
(6) G-S(sol) free energy of system = (1) + (5) -200.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds