Wall clock time and date at job start Tue Mar 31 2020 02:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 O 1.45202 * 109.46867 * 240.00551 * 2 1 3 5 5 C 1.34228 * 117.00156 * 89.99837 * 4 2 1 6 6 O 1.20826 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99925 * 179.97438 * 5 4 2 8 8 O 1.42904 * 109.47211 * 179.97438 * 7 5 4 9 9 C 1.42898 * 113.99927 * 180.02562 * 8 7 5 10 10 C 1.53003 * 117.49947 * 218.74633 * 9 8 7 11 11 C 1.53003 * 117.49891 * 150.08765 * 9 8 7 12 12 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 13 13 O 1.21282 * 119.99755 * 115.00291 * 12 2 1 14 14 N 1.34766 * 120.00340 * 295.00283 * 12 2 1 15 15 C 1.46503 * 119.99858 * 0.02562 * 14 12 2 16 16 C 1.46500 * 120.00348 * 180.02562 * 14 12 2 17 17 C 1.50697 * 109.47316 * 90.00041 * 16 14 12 18 18 H 1.07998 * 119.99859 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00068 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00165 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47220 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47083 * 119.99971 * 21 19 17 24 24 H 1.48508 * 109.46934 * 239.99559 * 21 19 17 25 25 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47576 * 300.00356 * 7 5 4 29 29 H 1.09007 * 109.47210 * 60.00001 * 7 5 4 30 30 H 1.08998 * 115.55150 * 4.41782 * 9 8 7 31 31 H 1.09003 * 117.49612 * 0.02562 * 10 9 8 32 32 H 1.09005 * 117.49743 * 145.02186 * 10 9 8 33 33 H 1.08994 * 117.50023 * 214.97672 * 11 9 8 34 34 H 1.09002 * 117.49418 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.47030 * 90.00471 * 15 14 12 36 36 H 1.09000 * 109.47055 * 209.99852 * 15 14 12 37 37 H 1.08995 * 109.47456 * 329.99872 * 15 14 12 38 38 H 1.08998 * 109.47253 * 210.00142 * 16 14 12 39 39 H 1.09005 * 109.46912 * 329.99677 * 16 14 12 40 40 H 0.97001 * 119.99943 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1857 5 6 2.2171 0.0642 -2.2812 6 8 1.9973 1.2519 -2.2506 7 6 2.7192 -0.5768 -3.5492 8 8 2.8536 0.4189 -4.5654 9 6 3.3256 -0.0868 -5.8158 10 6 4.3131 0.7792 -6.6006 11 6 2.8690 0.6327 -7.0865 12 6 2.0324 -0.7104 1.2304 13 8 2.6531 -1.7466 1.1214 14 7 1.7920 -0.1943 2.4519 15 6 1.0417 1.0572 2.5836 16 6 2.2808 -0.8845 3.6481 17 6 3.6621 -0.3861 3.9865 18 1 4.1290 0.3696 3.3723 19 6 4.3298 -0.8948 5.0802 20 7 3.7611 -1.8148 5.8285 21 14 6.0424 -0.2775 5.4993 22 1 6.4545 0.7493 4.5089 23 1 6.0341 0.3204 6.8586 24 1 7.0001 -1.4119 5.4633 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.6883 -1.0398 -3.3633 29 1 2.0103 -1.3371 -3.8775 30 1 3.4528 -1.1680 -5.8678 31 1 4.6030 1.7345 -6.1629 32 1 5.0897 0.2676 -7.1692 33 1 2.6961 0.0248 -7.9746 34 1 2.2081 1.4915 -6.9687 35 1 -0.0222 0.8358 2.6683 36 1 1.3744 1.5881 3.4756 37 1 1.2148 1.6788 1.7052 38 1 1.6083 -0.6859 4.4825 39 1 2.3179 -1.9574 3.4587 40 1 4.2311 -2.1729 6.5977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884653901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:50 Heat of formation + Delta-G solvation = -123.100580 kcal Electronic energy + Delta-G solvation = -22481.787299 eV Core-core repulsion = 18877.918813 eV Total energy + Delta-G solvation = -3603.868487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73710 -39.17201 -38.57984 -36.44740 -35.17755 -34.94057 -32.91951 -31.67857 -28.63910 -27.68593 -26.17457 -24.43051 -22.75386 -22.73323 -22.31113 -20.99042 -18.90534 -17.99911 -17.55857 -16.73997 -16.55136 -16.52437 -15.96549 -15.40285 -15.08607 -14.82222 -14.54585 -14.32562 -13.94768 -13.50479 -13.22027 -12.87745 -12.42777 -12.26129 -12.17286 -12.13318 -11.89789 -11.79124 -11.65652 -11.43890 -11.22274 -10.91309 -10.87216 -10.73774 -10.61207 -10.45619 -10.18828 -9.65208 -9.55644 -8.93970 -8.46956 -7.75367 -6.07816 -4.12733 2.01246 2.11685 3.23020 3.28663 3.35638 3.36580 3.41869 3.47134 3.88667 4.41165 4.42361 4.54503 4.56705 4.75677 4.83532 4.87790 4.91547 4.97999 5.07375 5.11791 5.27000 5.29783 5.49722 5.57446 5.63022 5.64391 5.79424 5.83678 5.97753 6.20506 6.36382 6.69790 6.95987 7.36417 7.44185 7.69396 7.88428 8.18023 8.26308 8.82138 8.97059 9.52546 11.00382 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.003307 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.403571 B = 8463.670427 C = 9222.123675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.107 0.893 4 O -0.324 6.324 5 C 0.461 3.539 6 O -0.491 6.491 7 C 0.074 3.926 8 O -0.336 6.336 9 C 0.013 3.987 10 C -0.187 4.187 11 C -0.181 4.181 12 C 0.509 3.491 13 O -0.520 6.520 14 N -0.595 5.595 15 C 0.076 3.924 16 C 0.246 3.754 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.037 0.963 39 H 0.046 0.954 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 4.016 -20.513 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 H 0.124 0.876 4 O -0.240 6.240 5 C 0.303 3.697 6 O -0.378 6.378 7 C -0.003 4.003 8 O -0.255 6.255 9 C -0.045 4.045 10 C -0.224 4.224 11 C -0.218 4.218 12 C 0.293 3.707 13 O -0.396 6.396 14 N -0.329 5.329 15 C -0.068 4.068 16 C 0.128 3.872 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.488 3.899 -20.297 21.384 hybrid contribution 0.973 0.324 0.363 1.088 sum -4.515 4.223 -19.934 20.870 Atomic orbital electron populations 1.22287 0.92239 1.04084 1.04137 1.22668 0.95795 0.97700 0.82533 0.87558 1.86560 1.76738 1.41291 1.19363 1.23145 0.75147 0.86026 0.85414 1.90674 1.46807 1.16348 1.83937 1.21710 1.03057 0.90663 0.84874 1.87904 1.86170 1.32299 1.19100 1.22736 1.02978 0.96218 0.82533 1.23439 0.93135 1.02864 1.02942 1.23379 0.97928 1.03769 0.96713 1.19736 0.81198 0.85934 0.83812 1.90704 1.39671 1.23422 1.85760 1.48070 1.53958 1.23963 1.06875 1.21857 0.95362 0.86722 1.02893 1.19368 0.94350 0.93813 0.79718 1.21462 1.00999 1.22969 1.11291 0.92352 1.24934 0.98254 0.94876 0.96014 1.69939 1.38041 1.28058 1.17266 0.86425 0.84085 0.78764 0.78061 1.19774 1.20907 1.20815 0.89179 0.91247 0.90885 0.88190 0.88414 0.86540 0.87911 0.87958 0.87924 0.87953 0.93062 0.90238 0.92314 0.94544 0.93611 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 9.27 37.16 0.34 -1.88 16 2 C 0.07 1.20 2.16 -27.88 -0.06 1.14 16 3 H 0.11 1.74 6.15 -51.93 -0.32 1.42 16 4 O -0.32 -5.42 9.42 -45.88 -0.43 -5.85 16 5 C 0.46 6.89 8.01 36.00 0.29 7.17 16 6 O -0.49 -8.53 15.72 -25.48 -0.40 -8.93 16 7 C 0.07 0.80 6.40 36.00 0.23 1.03 16 8 O -0.34 -4.05 10.13 -55.18 -0.56 -4.61 16 9 C 0.01 0.11 6.44 -26.73 -0.17 -0.06 16 10 C -0.19 -1.42 10.48 -26.69 -0.28 -1.70 16 11 C -0.18 -1.32 10.48 -26.69 -0.28 -1.60 16 12 C 0.51 10.92 7.10 -10.99 -0.08 10.84 16 13 O -0.52 -13.46 16.09 -14.05 -0.23 -13.69 16 14 N -0.60 -12.61 2.86 -182.96 -0.52 -13.13 16 15 C 0.08 1.17 8.92 59.85 0.53 1.71 16 16 C 0.25 6.39 5.16 -5.20 -0.03 6.37 16 17 C -0.53 -14.99 9.39 -34.44 -0.32 -15.32 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 21 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 25 H 0.09 1.04 5.12 -51.93 -0.27 0.77 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.12 0.69 7.93 -51.93 -0.41 0.27 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.66 7.02 -51.93 -0.36 0.29 16 36 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 37 H 0.06 0.78 6.07 -51.93 -0.32 0.47 16 38 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 39 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 344.74 15.07 5.20 5.20 Total: -1.00 -35.77 344.74 -6.98 -42.74 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.83 Total: -2.27 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 0.08 Total: 9.37 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.21 Total: -38.83 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.62 Total: -33.08 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.77 -6.98 -42.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884653901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.358 kcal (2) G-P(sol) polarization free energy of solvation -35.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds