Wall clock time and date at job start Tue Mar 31 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 O 1.45202 * 109.46867 * 240.00551 * 2 1 3 5 5 C 1.34228 * 117.00156 * 89.99837 * 4 2 1 6 6 O 1.20826 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99925 * 179.97438 * 5 4 2 8 8 O 1.42904 * 109.47211 * 179.97438 * 7 5 4 9 9 C 1.42898 * 113.99927 * 180.02562 * 8 7 5 10 10 C 1.53003 * 117.49947 * 218.74633 * 9 8 7 11 11 C 1.53003 * 117.49891 * 150.08765 * 9 8 7 12 12 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 13 13 O 1.21282 * 119.99755 * 115.00291 * 12 2 1 14 14 N 1.34766 * 120.00340 * 295.00283 * 12 2 1 15 15 C 1.46503 * 119.99858 * 0.02562 * 14 12 2 16 16 C 1.46500 * 120.00348 * 180.02562 * 14 12 2 17 17 C 1.50697 * 109.47316 * 90.00041 * 16 14 12 18 18 H 1.07998 * 119.99859 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00068 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00165 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47220 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47083 * 119.99971 * 21 19 17 24 24 H 1.48508 * 109.46934 * 239.99559 * 21 19 17 25 25 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47576 * 300.00356 * 7 5 4 29 29 H 1.09007 * 109.47210 * 60.00001 * 7 5 4 30 30 H 1.08998 * 115.55150 * 4.41782 * 9 8 7 31 31 H 1.09003 * 117.49612 * 0.02562 * 10 9 8 32 32 H 1.09005 * 117.49743 * 145.02186 * 10 9 8 33 33 H 1.08994 * 117.50023 * 214.97672 * 11 9 8 34 34 H 1.09002 * 117.49418 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.47030 * 90.00471 * 15 14 12 36 36 H 1.09000 * 109.47055 * 209.99852 * 15 14 12 37 37 H 1.08995 * 109.47456 * 329.99872 * 15 14 12 38 38 H 1.08998 * 109.47253 * 210.00142 * 16 14 12 39 39 H 1.09005 * 109.46912 * 329.99677 * 16 14 12 40 40 H 0.97001 * 119.99943 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1857 5 6 2.2171 0.0642 -2.2812 6 8 1.9973 1.2519 -2.2506 7 6 2.7192 -0.5768 -3.5492 8 8 2.8536 0.4189 -4.5654 9 6 3.3256 -0.0868 -5.8158 10 6 4.3131 0.7792 -6.6006 11 6 2.8690 0.6327 -7.0865 12 6 2.0324 -0.7104 1.2304 13 8 2.6531 -1.7466 1.1214 14 7 1.7920 -0.1943 2.4519 15 6 1.0417 1.0572 2.5836 16 6 2.2808 -0.8845 3.6481 17 6 3.6621 -0.3861 3.9865 18 1 4.1290 0.3696 3.3723 19 6 4.3298 -0.8948 5.0802 20 7 3.7611 -1.8148 5.8285 21 14 6.0424 -0.2775 5.4993 22 1 6.4545 0.7493 4.5089 23 1 6.0341 0.3204 6.8586 24 1 7.0001 -1.4119 5.4633 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.6883 -1.0398 -3.3633 29 1 2.0103 -1.3371 -3.8775 30 1 3.4528 -1.1680 -5.8678 31 1 4.6030 1.7345 -6.1629 32 1 5.0897 0.2676 -7.1692 33 1 2.6961 0.0248 -7.9746 34 1 2.2081 1.4915 -6.9687 35 1 -0.0222 0.8358 2.6683 36 1 1.3744 1.5881 3.4756 37 1 1.2148 1.6788 1.7052 38 1 1.6083 -0.6859 4.4825 39 1 2.3179 -1.9574 3.4587 40 1 4.2311 -2.1729 6.5977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884653901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:49 Heat of formation + Delta-G solvation = -146.172973 kcal Electronic energy + Delta-G solvation = -22482.787793 eV Core-core repulsion = 18877.918813 eV Total energy + Delta-G solvation = -3604.868981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.00090 -40.62969 -39.47110 -37.69756 -36.72530 -35.89824 -34.92376 -33.12761 -29.83319 -29.31295 -27.66855 -26.01521 -24.41672 -23.29389 -22.95268 -22.25410 -20.47257 -19.17366 -18.70525 -18.51372 -17.88885 -17.67767 -17.39944 -16.91732 -16.49413 -16.13413 -15.69921 -15.49509 -15.00256 -14.77553 -14.58364 -14.26798 -14.05420 -13.70981 -13.54077 -13.34239 -13.08638 -12.97736 -12.83416 -12.64757 -12.54190 -12.50606 -12.39838 -12.24170 -11.99162 -11.71236 -11.63146 -11.39395 -10.66700 -10.65285 -10.22265 -9.54219 -8.25414 -6.39893 0.89992 1.01206 1.35602 1.37842 1.49371 1.59125 2.17644 2.38347 2.73638 2.89539 3.04680 3.36259 3.45612 3.73665 3.80807 3.89481 3.99244 4.08219 4.19438 4.26774 4.31377 4.49246 4.56425 4.59800 4.67100 4.77609 4.85611 4.93659 5.02300 5.07685 5.16492 5.22838 5.24311 5.49353 5.76121 6.00920 6.01783 6.48630 6.60753 6.68887 7.17722 7.33826 8.82141 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.003307 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.403571 B = 8463.670427 C = 9222.123675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 H 0.113 0.887 4 O -0.338 6.338 5 C 0.459 3.541 6 O -0.520 6.520 7 C 0.078 3.922 8 O -0.368 6.368 9 C -0.002 4.002 10 C -0.191 4.191 11 C -0.177 4.177 12 C 0.501 3.499 13 O -0.577 6.577 14 N -0.599 5.599 15 C 0.068 3.932 16 C 0.259 3.741 17 C -0.546 4.546 18 H 0.051 0.949 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.967 3.033 22 H -0.270 1.270 23 H -0.267 1.267 24 H -0.280 1.280 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.035 0.965 39 H 0.003 0.997 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 4.811 -21.905 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.130 0.870 4 O -0.255 6.255 5 C 0.303 3.697 6 O -0.408 6.408 7 C 0.002 3.998 8 O -0.287 6.287 9 C -0.058 4.058 10 C -0.228 4.228 11 C -0.214 4.214 12 C 0.287 3.713 13 O -0.457 6.457 14 N -0.331 5.331 15 C -0.074 4.074 16 C 0.139 3.861 17 C -0.585 4.585 18 H 0.069 0.931 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.194 1.194 23 H -0.192 1.192 24 H -0.206 1.206 25 H 0.127 0.873 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.136 0.864 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.103 0.897 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.052 0.948 39 H 0.021 0.979 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.647 4.736 -21.701 22.918 hybrid contribution 0.990 0.086 0.757 1.249 sum -4.657 4.822 -20.943 21.990 Atomic orbital electron populations 1.22295 0.89026 1.04635 1.05901 1.22563 0.97992 0.96628 0.80699 0.86967 1.86569 1.77079 1.42012 1.19791 1.24014 0.74118 0.85774 0.85807 1.90651 1.48266 1.17595 1.84326 1.21896 1.04603 0.90464 0.82886 1.87853 1.86707 1.33720 1.20459 1.23128 1.03501 0.97827 0.81381 1.23509 0.93958 1.02266 1.03066 1.23457 0.97298 1.03476 0.97123 1.20587 0.80149 0.85420 0.85105 1.90662 1.42241 1.26050 1.86743 1.48052 1.54022 1.25362 1.05676 1.22201 0.96575 0.84544 1.04060 1.18868 0.93876 0.91881 0.81516 1.21709 1.02225 1.23054 1.11509 0.93106 1.25822 1.02343 0.94926 0.95835 1.70041 1.39768 1.28952 1.17740 0.85376 0.78867 0.78210 0.78403 1.19439 1.19223 1.20610 0.87325 0.89473 0.90980 0.86437 0.85058 0.83693 0.89661 0.85838 0.85474 0.89325 0.89548 0.90631 0.89608 0.94751 0.97905 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.27 71.98 0.67 -3.19 16 2 C 0.08 2.59 2.16 29.85 0.06 2.65 16 3 H 0.11 3.53 6.15 -2.39 -0.01 3.52 16 4 O -0.34 -11.11 9.42 -45.06 -0.42 -11.54 16 5 C 0.46 13.25 8.01 71.23 0.57 13.82 16 6 O -0.52 -17.65 15.72 28.40 0.45 -17.20 16 7 C 0.08 1.54 6.40 71.23 0.46 2.00 16 8 O -0.37 -8.38 10.13 -129.90 -1.32 -9.70 16 9 C 0.00 -0.02 6.44 30.60 0.20 0.17 16 10 C -0.19 -2.62 10.48 30.62 0.32 -2.30 16 11 C -0.18 -2.25 10.48 30.62 0.32 -1.93 16 12 C 0.50 21.75 7.10 87.66 0.62 22.37 16 13 O -0.58 -31.04 16.09 15.71 0.25 -30.79 16 14 N -0.60 -25.52 2.86 -851.14 -2.43 -27.95 16 15 C 0.07 1.99 8.92 127.77 1.14 3.13 16 16 C 0.26 13.91 5.16 85.63 0.44 14.35 16 17 C -0.55 -31.63 9.39 25.60 0.24 -31.39 16 18 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 19 C 0.01 0.58 5.46 84.65 0.46 1.04 16 20 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 21 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H 0.11 2.15 5.12 -2.39 -0.01 2.14 16 26 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.15 1.24 7.93 -2.39 -0.02 1.22 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.95 7.02 -2.39 -0.02 1.94 16 36 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 37 H 0.09 2.06 6.07 -2.39 -0.01 2.05 16 38 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 39 H 0.00 0.17 7.42 -2.38 -0.02 0.16 16 40 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -80.67 344.74 5.38 -75.29 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.04 Total: 9.38 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 5.50 Total: 20.73 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.15 Total: -83.24 kcal Atomic # 8 Polarization: -68.19 SS G_CDS: -1.04 Total: -69.23 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -80.67 5.38 -75.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884653901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.887 kcal (2) G-P(sol) polarization free energy of solvation -80.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds