Wall clock time and date at job start Tue Mar 31 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47340 * 2 1 4 4 C 1.46502 * 120.00144 * 269.99856 * 3 2 1 5 5 C 1.50696 * 109.46936 * 269.99887 * 4 3 2 6 6 H 1.07992 * 120.00409 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99494 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00319 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99850 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46990 * 89.99965 * 9 7 5 11 11 H 1.48498 * 109.47431 * 210.00083 * 9 7 5 12 12 H 1.48506 * 109.47023 * 330.00559 * 9 7 5 13 13 C 1.34778 * 119.99762 * 89.99874 * 3 2 1 14 14 O 1.21288 * 119.99611 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00377 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47357 * 179.97438 * 15 13 3 17 17 C 1.34231 * 117.00262 * 179.97438 * 16 15 13 18 18 O 1.20828 * 119.99845 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00154 * 180.02562 * 17 16 15 20 20 O 1.42905 * 109.46972 * 180.02562 * 19 17 16 21 21 C 1.42899 * 113.99778 * 180.02562 * 20 19 17 22 22 C 1.52997 * 117.49619 * 218.61866 * 21 20 19 23 23 C 1.52994 * 60.00066 * 252.50870 * 22 21 20 24 24 H 1.09000 * 109.47289 * 300.00445 * 1 2 3 25 25 H 1.09003 * 109.46976 * 60.00077 * 1 2 3 26 26 H 1.08999 * 109.47363 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47295 * 240.00033 * 2 1 3 28 28 H 1.09003 * 109.46976 * 119.99923 * 2 1 3 29 29 H 1.09005 * 109.46808 * 30.00134 * 4 3 2 30 30 H 1.09000 * 109.46761 * 149.99905 * 4 3 2 31 31 H 0.97001 * 119.99924 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46992 * 60.00357 * 15 13 3 33 33 H 1.09001 * 109.47453 * 300.00094 * 15 13 3 34 34 H 1.09000 * 109.47247 * 60.00272 * 19 17 16 35 35 H 1.09001 * 109.47358 * 299.99698 * 19 17 16 36 36 H 1.08993 * 115.55216 * 4.32956 * 21 20 19 37 37 H 1.08997 * 117.50274 * 0.02562 * 22 21 20 38 38 H 1.09006 * 117.49745 * 145.01842 * 22 21 20 39 39 H 1.08997 * 117.50498 * 252.50952 * 23 22 21 40 40 H 1.09004 * 117.51701 * 107.48047 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6180 9 14 5.9137 2.0967 -3.4167 10 1 5.9777 0.8753 -4.2590 11 1 6.3923 3.2638 -4.2002 12 1 6.7737 1.9178 -2.2194 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1602 1.1672 15 6 1.9912 1.3064 2.4723 16 8 2.3064 2.1957 3.5759 17 6 2.1345 1.7123 4.8163 18 8 1.7343 0.5833 4.9747 19 6 2.4406 2.5778 6.0115 20 8 2.1806 1.8441 7.2099 21 6 2.4396 2.5781 8.4084 22 6 3.0695 1.8202 9.5787 23 6 1.5990 2.2380 9.6407 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1383 31 1 3.6753 3.5162 -4.4439 32 1 2.6211 0.4186 2.5303 33 1 0.9431 1.0126 2.5299 34 1 1.8118 3.4677 5.9862 35 1 3.4895 2.8732 5.9871 36 1 2.7291 3.6195 8.2686 37 1 3.2868 0.7619 9.4344 38 1 3.7739 2.3631 10.2091 39 1 1.3358 3.0555 10.3117 40 1 0.8481 1.4546 9.5371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884655862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:22 Heat of formation + Delta-G solvation = -128.284570 kcal Electronic energy + Delta-G solvation = -22170.372161 eV Core-core repulsion = 18566.278880 eV Total energy + Delta-G solvation = -3604.093281 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63580 -39.13572 -38.63278 -36.45709 -35.34059 -35.19397 -32.86188 -30.23043 -29.81912 -28.17393 -26.35610 -23.10787 -22.76625 -22.72991 -22.35036 -21.25845 -18.74905 -17.96584 -17.53549 -17.00646 -16.61712 -16.46394 -16.02055 -15.51049 -15.34777 -14.86554 -14.38547 -14.33295 -14.01777 -13.48887 -13.29233 -12.93880 -12.63760 -12.23186 -12.12583 -12.07205 -11.91313 -11.77792 -11.63886 -11.25272 -10.95992 -10.90331 -10.89621 -10.64427 -10.56137 -10.50508 -10.16473 -9.68157 -9.58047 -9.03267 -8.46546 -7.78028 -6.07571 -4.12506 1.98735 2.06390 3.21509 3.28894 3.33440 3.35776 3.41041 3.44679 3.87509 4.39496 4.41886 4.54680 4.57835 4.78181 4.83922 4.86588 4.87543 5.08524 5.13874 5.18725 5.27169 5.27759 5.34967 5.55104 5.57147 5.71809 5.77130 5.98304 6.17680 6.27326 6.43465 6.67008 6.97404 7.37261 7.44719 7.65089 7.88438 8.18360 8.26819 8.81800 8.96735 9.52594 11.00590 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024802 B = 0.003013 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.661157 B = 9292.222336 C = 9946.357257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.051 3.949 16 O -0.327 6.327 17 C 0.461 3.539 18 O -0.492 6.492 19 C 0.075 3.925 20 O -0.337 6.337 21 C 0.013 3.987 22 C -0.186 4.186 23 C -0.181 4.181 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 -3.372 20.686 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.026 4.026 16 O -0.243 6.243 17 C 0.303 3.697 18 O -0.379 6.379 19 C -0.003 4.003 20 O -0.255 6.255 21 C -0.045 4.045 22 C -0.224 4.224 23 C -0.218 4.218 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.359 -3.184 20.490 21.189 hybrid contribution 0.959 -0.210 -0.461 1.084 sum -3.400 -3.394 20.029 20.597 Atomic orbital electron populations 1.22234 0.96493 1.01738 1.02422 1.21521 0.93790 0.83910 1.03077 1.48215 1.63753 1.13433 1.07111 1.19341 0.96500 0.93716 0.77531 1.21422 0.96855 1.32096 1.06362 0.92384 1.24935 0.97941 0.94842 0.96352 1.69928 1.35744 1.33307 1.14318 0.86481 0.84559 0.77687 0.78603 1.20624 1.21057 1.19861 1.19684 0.79747 0.87145 0.84259 1.90717 1.44565 1.17482 1.86739 1.23005 1.02865 0.92607 0.84101 1.86508 1.78704 1.45106 1.13949 1.23147 0.75145 0.86872 0.84582 1.90690 1.41067 1.19637 1.86494 1.21704 1.03405 0.93212 0.81962 1.87900 1.87403 1.38540 1.11676 1.22736 1.04904 0.95466 0.81369 1.23423 0.96058 1.02283 1.00606 1.23369 0.94913 1.04270 0.99239 0.93123 0.91770 0.91859 0.89368 0.91722 0.94592 0.93679 0.92654 0.88516 0.88581 0.88266 0.88234 0.86498 0.87940 0.87965 0.87897 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.10 1.59 5.93 -4.04 -0.02 1.56 16 3 N -0.59 -12.33 2.46 -175.06 -0.43 -12.76 16 4 C 0.25 6.36 5.16 -5.19 -0.03 6.34 16 5 C -0.53 -14.81 9.39 -34.44 -0.32 -15.14 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 13 C 0.51 10.66 7.75 -10.99 -0.09 10.58 16 14 O -0.52 -13.25 16.08 -14.11 -0.23 -13.48 16 15 C 0.05 0.84 4.50 36.00 0.16 1.00 16 16 O -0.33 -5.35 9.75 -45.91 -0.45 -5.80 16 17 C 0.46 6.62 8.03 36.01 0.29 6.91 16 18 O -0.49 -8.28 16.25 -25.48 -0.41 -8.69 16 19 C 0.07 0.77 6.40 36.01 0.23 1.00 16 20 O -0.34 -3.91 10.13 -55.18 -0.56 -4.47 16 21 C 0.01 0.11 6.44 -26.73 -0.17 -0.07 16 22 C -0.19 -1.33 10.48 -26.74 -0.28 -1.61 16 23 C -0.18 -1.28 10.48 -26.74 -0.28 -1.56 16 24 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 28 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 29 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 32 H 0.10 1.43 7.39 -51.93 -0.38 1.04 16 33 H 0.10 1.36 7.18 -51.93 -0.37 0.99 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.12 0.65 7.93 -51.93 -0.41 0.24 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -35.26 350.05 -7.34 -42.61 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -6.03 Total: -2.58 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -0.23 Total: 8.78 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.31 Total: -38.33 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.65 Total: -32.44 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.26 -7.34 -42.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884655862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.679 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds