Wall clock time and date at job start Tue Mar 31 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47340 * 2 1 4 4 C 1.46502 * 120.00144 * 269.99856 * 3 2 1 5 5 C 1.50696 * 109.46936 * 269.99887 * 4 3 2 6 6 H 1.07992 * 120.00409 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99494 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00319 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99850 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46990 * 89.99965 * 9 7 5 11 11 H 1.48498 * 109.47431 * 210.00083 * 9 7 5 12 12 H 1.48506 * 109.47023 * 330.00559 * 9 7 5 13 13 C 1.34778 * 119.99762 * 89.99874 * 3 2 1 14 14 O 1.21288 * 119.99611 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00377 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47357 * 179.97438 * 15 13 3 17 17 C 1.34231 * 117.00262 * 179.97438 * 16 15 13 18 18 O 1.20828 * 119.99845 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00154 * 180.02562 * 17 16 15 20 20 O 1.42905 * 109.46972 * 180.02562 * 19 17 16 21 21 C 1.42899 * 113.99778 * 180.02562 * 20 19 17 22 22 C 1.52997 * 117.49619 * 218.61866 * 21 20 19 23 23 C 1.52994 * 60.00066 * 252.50870 * 22 21 20 24 24 H 1.09000 * 109.47289 * 300.00445 * 1 2 3 25 25 H 1.09003 * 109.46976 * 60.00077 * 1 2 3 26 26 H 1.08999 * 109.47363 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47295 * 240.00033 * 2 1 3 28 28 H 1.09003 * 109.46976 * 119.99923 * 2 1 3 29 29 H 1.09005 * 109.46808 * 30.00134 * 4 3 2 30 30 H 1.09000 * 109.46761 * 149.99905 * 4 3 2 31 31 H 0.97001 * 119.99924 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46992 * 60.00357 * 15 13 3 33 33 H 1.09001 * 109.47453 * 300.00094 * 15 13 3 34 34 H 1.09000 * 109.47247 * 60.00272 * 19 17 16 35 35 H 1.09001 * 109.47358 * 299.99698 * 19 17 16 36 36 H 1.08993 * 115.55216 * 4.32956 * 21 20 19 37 37 H 1.08997 * 117.50274 * 0.02562 * 22 21 20 38 38 H 1.09006 * 117.49745 * 145.01842 * 22 21 20 39 39 H 1.08997 * 117.50498 * 252.50952 * 23 22 21 40 40 H 1.09004 * 117.51701 * 107.48047 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 3.3492 3.1257 -3.6180 9 14 5.9137 2.0967 -3.4167 10 1 5.9777 0.8753 -4.2590 11 1 6.3923 3.2638 -4.2002 12 1 6.7737 1.9178 -2.2194 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1602 1.1672 15 6 1.9912 1.3064 2.4723 16 8 2.3064 2.1957 3.5759 17 6 2.1345 1.7123 4.8163 18 8 1.7343 0.5833 4.9747 19 6 2.4406 2.5778 6.0115 20 8 2.1806 1.8441 7.2099 21 6 2.4396 2.5781 8.4084 22 6 3.0695 1.8202 9.5787 23 6 1.5990 2.2380 9.6407 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1383 31 1 3.6753 3.5162 -4.4439 32 1 2.6211 0.4186 2.5303 33 1 0.9431 1.0126 2.5299 34 1 1.8118 3.4677 5.9862 35 1 3.4895 2.8732 5.9871 36 1 2.7291 3.6195 8.2686 37 1 3.2868 0.7619 9.4344 38 1 3.7739 2.3631 10.2091 39 1 1.3358 3.0555 10.3117 40 1 0.8481 1.4546 9.5371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884655862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:22 Heat of formation + Delta-G solvation = -150.322658 kcal Electronic energy + Delta-G solvation = -22171.327804 eV Core-core repulsion = 18566.278880 eV Total energy + Delta-G solvation = -3605.048924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.84372 -40.62352 -39.46551 -37.67359 -36.98992 -35.89310 -34.94236 -31.79593 -31.06361 -29.46964 -28.02934 -24.90660 -24.18061 -23.28277 -22.95469 -22.40388 -20.31719 -19.07550 -18.68838 -18.42292 -18.09741 -17.76027 -17.46196 -16.94827 -16.56152 -16.17479 -15.66837 -15.49453 -14.94655 -14.79358 -14.61671 -14.48598 -13.92204 -13.78786 -13.61051 -13.28925 -13.08479 -12.96703 -12.68646 -12.51666 -12.50096 -12.38782 -12.24073 -12.08208 -11.82529 -11.72613 -11.66236 -11.39197 -10.75357 -10.64386 -10.21233 -9.55902 -8.23457 -6.37918 0.93298 0.97264 1.37345 1.40175 1.50190 1.59939 2.18177 2.39926 2.76450 2.90397 3.06708 3.39604 3.51163 3.88221 3.91527 3.93487 4.00790 4.10979 4.14220 4.21092 4.28093 4.36978 4.56414 4.57890 4.78491 4.86887 4.93644 5.02172 5.03215 5.13778 5.20715 5.25160 5.35211 5.53484 5.78764 6.01602 6.03738 6.49983 6.62185 6.71161 7.19662 7.35767 8.84009 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024802 B = 0.003013 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.661157 B = 9292.222336 C = 9946.357257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.063 3.937 16 O -0.343 6.343 17 C 0.462 3.538 18 O -0.520 6.520 19 C 0.078 3.922 20 O -0.368 6.368 21 C -0.001 4.001 22 C -0.187 4.187 23 C -0.180 4.180 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.030 0.970 30 H 0.001 0.999 31 H 0.268 0.732 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 -4.254 22.224 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.014 4.014 16 O -0.259 6.259 17 C 0.306 3.694 18 O -0.409 6.409 19 C 0.001 3.999 20 O -0.287 6.287 21 C -0.058 4.058 22 C -0.224 4.224 23 C -0.217 4.217 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.048 0.952 30 H 0.019 0.981 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.163 0.837 37 H 0.105 0.895 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.839 -4.114 22.048 22.755 hybrid contribution 0.740 0.049 -0.887 1.156 sum -3.099 -4.065 21.161 21.769 Atomic orbital electron populations 1.22177 0.94316 1.03783 1.01873 1.21869 0.95570 0.80999 1.04406 1.48212 1.63548 1.15252 1.05709 1.18805 0.95608 0.91720 0.79705 1.21694 0.97815 1.32207 1.06639 0.92758 1.25847 1.02402 0.94411 0.96396 1.70044 1.37787 1.34058 1.14782 0.85408 0.78964 0.78185 0.78205 1.18849 1.20626 1.19777 1.20487 0.78375 0.86646 0.85750 1.90680 1.47117 1.20047 1.87731 1.22843 1.04774 0.92020 0.81762 1.86515 1.79063 1.45581 1.14758 1.23961 0.73947 0.86996 0.84541 1.90670 1.42575 1.21021 1.86601 1.21893 1.05327 0.92628 0.80026 1.87849 1.87888 1.40177 1.12816 1.23118 1.05729 0.96636 0.80339 1.23492 0.96672 1.01695 1.00579 1.23448 0.94523 1.04567 0.99196 0.92422 0.93604 0.88443 0.89938 0.88480 0.95219 0.98100 0.92338 0.86503 0.86019 0.85576 0.85854 0.83741 0.89462 0.85804 0.85644 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 10.24 71.98 0.74 -3.27 16 2 C 0.09 2.81 5.93 86.38 0.51 3.32 16 3 N -0.59 -25.06 2.46 -826.14 -2.03 -27.08 16 4 C 0.26 14.02 5.16 85.63 0.44 14.46 16 5 C -0.55 -31.19 9.39 25.60 0.24 -30.95 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.49 5.46 84.66 0.46 0.96 16 8 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 9 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 13 C 0.50 21.21 7.75 87.66 0.68 21.89 16 14 O -0.58 -30.42 16.08 15.74 0.25 -30.17 16 15 C 0.06 1.95 4.50 71.23 0.32 2.27 16 16 O -0.34 -10.86 9.75 -45.07 -0.44 -11.30 16 17 C 0.46 12.59 8.03 71.24 0.57 13.16 16 18 O -0.52 -16.81 16.25 28.39 0.46 -16.35 16 19 C 0.08 1.44 6.40 71.24 0.46 1.90 16 20 O -0.37 -7.98 10.13 -129.90 -1.32 -9.29 16 21 C 0.00 -0.02 6.44 30.59 0.20 0.18 16 22 C -0.19 -2.35 10.48 30.59 0.32 -2.03 16 23 C -0.18 -2.23 10.48 30.59 0.32 -1.91 16 24 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 25 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 2.58 8.07 -2.38 -0.02 2.56 16 28 H 0.10 2.30 6.44 -2.39 -0.02 2.28 16 29 H 0.03 1.60 8.07 -2.38 -0.02 1.58 16 30 H 0.00 0.05 7.42 -2.39 -0.02 0.04 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.12 3.18 7.39 -2.39 -0.02 3.16 16 33 H 0.12 3.17 7.18 -2.39 -0.02 3.15 16 34 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.15 1.15 7.93 -2.39 -0.02 1.13 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -79.49 350.05 5.53 -73.96 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.03 Total: 8.98 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 5.26 Total: 19.97 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -1.74 Total: -82.47 kcal Atomic # 8 Polarization: -66.07 SS G_CDS: -1.04 Total: -67.11 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -79.49 5.53 -73.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884655862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.359 kcal (2) G-P(sol) polarization free energy of solvation -79.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds