Wall clock time and date at job start Tue Mar 31 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47138 * 2 1 4 4 O 1.45195 * 109.47207 * 239.99596 * 2 1 3 5 5 C 1.34228 * 117.00045 * 90.00197 * 4 2 1 6 6 O 1.20826 * 119.99795 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00105 * 180.02562 * 5 4 2 8 8 H 1.08999 * 110.99233 * 62.74268 * 7 5 4 9 9 C 1.55457 * 111.18348 * 186.89692 * 7 5 4 10 10 C 1.54382 * 102.18540 * 152.00761 * 9 7 5 11 11 O 1.43233 * 107.66464 * 338.74226 * 10 9 7 12 12 C 1.43650 * 109.97542 * 358.24175 * 11 10 9 13 13 C 1.50699 * 109.46979 * 119.99846 * 2 1 3 14 14 O 1.21280 * 120.00293 * 120.00389 * 13 2 1 15 15 N 1.34783 * 119.99814 * 299.99852 * 13 2 1 16 16 C 1.46502 * 119.99989 * 0.02562 * 15 13 2 17 17 C 1.46506 * 119.99782 * 180.02562 * 15 13 2 18 18 C 1.50698 * 109.47315 * 90.00147 * 17 15 13 19 19 H 1.08009 * 119.99624 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00262 * 180.02562 * 18 17 15 21 21 N 1.31517 * 119.99551 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00254 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47161 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47304 * 119.99629 * 22 20 18 25 25 H 1.48496 * 109.47133 * 239.99860 * 22 20 18 26 26 H 1.09001 * 109.46965 * 60.00742 * 1 2 3 27 27 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47326 * 299.99900 * 1 2 3 29 29 H 1.08994 * 110.83103 * 33.85826 * 9 7 5 30 30 H 1.08999 * 110.92148 * 270.19704 * 9 7 5 31 31 H 1.09002 * 109.83024 * 219.18066 * 10 9 7 32 32 H 1.08996 * 109.83002 * 98.29659 * 10 9 7 33 33 H 1.08996 * 110.30866 * 143.34644 * 12 11 10 34 34 H 1.08998 * 110.30791 * 265.41708 * 12 11 10 35 35 H 1.08995 * 109.46637 * 89.99818 * 16 15 13 36 36 H 1.09002 * 109.47103 * 210.00034 * 16 15 13 37 37 H 1.08998 * 109.46934 * 330.00270 * 16 15 13 38 38 H 1.08999 * 109.46723 * 209.99975 * 17 15 13 39 39 H 1.09001 * 109.47246 * 329.99792 * 17 15 13 40 40 H 0.97003 * 119.99783 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0639 -2.2810 6 8 1.9974 1.2516 -2.2506 7 6 2.7183 -0.5774 -3.5494 8 1 2.0031 -1.3086 -3.9262 9 6 3.0445 0.4925 -4.6290 10 6 4.1442 -0.2055 -5.4577 11 8 4.7224 -1.2283 -4.6386 12 6 4.1131 -1.2183 -3.3378 13 6 2.0323 -0.7104 1.2305 14 8 2.7296 -1.6964 1.1193 15 7 1.7067 -0.2498 2.4546 16 6 0.8640 0.9410 2.5889 17 6 2.1954 -0.9401 3.6508 18 6 3.5228 -0.3561 4.0608 19 1 3.9589 0.4486 3.4873 20 6 4.1809 -0.8495 5.1672 21 7 3.6500 -1.8297 5.8652 22 14 5.8259 -0.1251 5.6758 23 1 6.2022 0.9586 4.7328 24 1 5.7195 0.4284 7.0497 25 1 6.8638 -1.1867 5.6487 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.4254 1.4041 -4.1686 30 1 2.1700 0.7036 -5.2444 31 1 4.9089 0.5178 -5.7410 32 1 3.7071 -0.6506 -6.3515 33 1 4.0088 -2.2357 -2.9610 34 1 4.7058 -0.6185 -2.6471 35 1 -0.1838 0.6427 2.6224 36 1 1.1217 1.4667 3.5084 37 1 1.0271 1.5996 1.7359 38 1 1.4775 -0.8148 4.4614 39 1 2.3169 -2.0014 3.4338 40 1 4.1129 -2.1767 6.6439 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910051644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:38 Heat of formation + Delta-G solvation = -158.138887 kcal Electronic energy + Delta-G solvation = -23126.223725 eV Core-core repulsion = 19520.835863 eV Total energy + Delta-G solvation = -3605.387861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.03311 -39.54412 -38.73229 -36.50167 -34.99801 -33.06323 -32.67681 -31.53521 -29.73345 -27.70770 -26.31013 -24.93081 -23.85519 -22.78999 -22.10344 -20.49077 -18.94414 -18.16202 -17.15405 -16.92197 -16.56126 -16.16312 -15.91508 -15.52489 -15.08349 -14.70956 -14.50838 -14.20675 -13.84341 -13.61194 -13.26429 -12.88413 -12.73063 -12.43917 -12.24102 -12.14480 -11.86459 -11.81850 -11.57081 -11.42922 -11.30443 -11.19393 -10.92795 -10.76957 -10.63120 -10.56680 -10.19974 -9.82567 -9.66705 -8.96404 -8.47997 -7.77341 -6.08940 -4.14025 1.99239 2.32416 3.20861 3.27875 3.35907 3.40145 3.54766 3.81931 3.93158 4.40937 4.46891 4.53593 4.69094 4.74659 4.81748 4.87271 4.95667 5.03883 5.25912 5.37489 5.39555 5.45724 5.51807 5.59247 5.60085 5.62419 5.73373 5.79245 5.93626 6.17401 6.32491 6.63660 6.93761 7.34996 7.41934 7.58672 7.87050 8.16565 8.24209 8.80306 8.95262 9.51353 10.99245 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019446 B = 0.004037 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.563370 B = 6933.888405 C = 7791.657361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 H 0.106 0.894 4 O -0.322 6.322 5 C 0.474 3.526 6 O -0.506 6.506 7 C -0.120 4.120 8 H 0.127 0.873 9 C -0.139 4.139 10 C 0.050 3.950 11 O -0.378 6.378 12 C 0.066 3.934 13 C 0.508 3.492 14 O -0.519 6.519 15 N -0.595 5.595 16 C 0.075 3.925 17 C 0.246 3.754 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.597 5.485 -18.407 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 H 0.124 0.876 4 O -0.236 6.236 5 C 0.316 3.684 6 O -0.394 6.394 7 C -0.139 4.139 8 H 0.144 0.856 9 C -0.177 4.177 10 C -0.026 4.026 11 O -0.298 6.298 12 C -0.010 4.010 13 C 0.293 3.707 14 O -0.394 6.394 15 N -0.329 5.329 16 C -0.068 4.068 17 C 0.128 3.872 18 C -0.568 4.568 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.208 1.208 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.103 5.047 -18.296 19.937 hybrid contribution 0.576 0.781 0.537 1.109 sum -5.527 5.828 -17.759 19.491 Atomic orbital electron populations 1.22402 0.92357 1.04154 1.04333 1.22658 0.95759 0.97668 0.82838 0.87614 1.86612 1.76197 1.41359 1.19475 1.23185 0.74263 0.85743 0.85218 1.90651 1.48081 1.16429 1.84220 1.22770 1.00446 0.99743 0.90928 0.85553 1.23141 0.99972 0.98516 0.96039 1.23172 0.95095 0.90279 0.94092 1.88453 1.62415 1.55118 1.23765 1.23346 0.89142 1.02800 0.85757 1.19751 0.81763 0.85423 0.83813 1.90709 1.36911 1.25963 1.85851 1.48068 1.49778 1.28369 1.06667 1.21890 0.93954 0.88044 1.02948 1.19365 0.94400 0.93767 0.79678 1.21462 1.04820 1.19203 1.11345 0.92367 1.24932 0.98005 0.94902 0.96198 1.69941 1.38968 1.26001 1.18328 0.86427 0.83623 0.79089 0.78203 1.19802 1.20897 1.20787 0.91405 0.90932 0.88779 0.88941 0.88980 0.90870 0.90779 0.87593 0.91142 0.92982 0.90263 0.92313 0.94566 0.93606 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.18 37.16 0.34 -1.86 16 2 C 0.07 1.12 2.18 -27.88 -0.06 1.06 16 3 H 0.11 1.66 6.42 -51.93 -0.33 1.33 16 4 O -0.32 -5.20 9.40 -45.90 -0.43 -5.63 16 5 C 0.47 6.52 7.24 36.01 0.26 6.78 16 6 O -0.51 -7.69 15.02 -18.75 -0.28 -7.97 16 7 C -0.12 -1.24 3.59 -89.44 -0.32 -1.56 16 8 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 9 C -0.14 -1.20 6.14 -24.70 -0.15 -1.35 16 10 C 0.05 0.42 7.79 37.88 0.30 0.71 16 11 O -0.38 -4.40 11.36 -35.23 -0.40 -4.80 16 12 C 0.07 0.76 7.24 38.18 0.28 1.04 16 13 C 0.51 10.72 7.15 -10.98 -0.08 10.64 16 14 O -0.52 -13.28 16.08 -14.10 -0.23 -13.50 16 15 N -0.60 -12.41 2.86 -182.95 -0.52 -12.94 16 16 C 0.08 1.14 8.80 59.85 0.53 1.67 16 17 C 0.25 6.35 5.16 -5.19 -0.03 6.32 16 18 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 19 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 22 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 1.04 4.53 -51.93 -0.24 0.80 16 29 H 0.09 0.90 7.48 -51.93 -0.39 0.51 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 0.88 8.02 -51.93 -0.42 0.46 16 35 H 0.05 0.65 6.95 -51.93 -0.36 0.29 16 36 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 37 H 0.06 0.75 6.00 -51.93 -0.31 0.44 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -34.45 334.29 -6.24 -40.69 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.77 Total: -1.97 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 0.64 Total: 9.88 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.21 Total: -38.51 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.34 Total: -31.90 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.45 -6.24 -40.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910051644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.449 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds