Wall clock time and date at job start Tue Mar 31 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47138 * 2 1 4 4 O 1.45195 * 109.47207 * 239.99596 * 2 1 3 5 5 C 1.34228 * 117.00045 * 90.00197 * 4 2 1 6 6 O 1.20826 * 119.99795 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00105 * 180.02562 * 5 4 2 8 8 H 1.08999 * 110.99233 * 62.74268 * 7 5 4 9 9 C 1.55457 * 111.18348 * 186.89692 * 7 5 4 10 10 C 1.54382 * 102.18540 * 152.00761 * 9 7 5 11 11 O 1.43233 * 107.66464 * 338.74226 * 10 9 7 12 12 C 1.43650 * 109.97542 * 358.24175 * 11 10 9 13 13 C 1.50699 * 109.46979 * 119.99846 * 2 1 3 14 14 O 1.21280 * 120.00293 * 120.00389 * 13 2 1 15 15 N 1.34783 * 119.99814 * 299.99852 * 13 2 1 16 16 C 1.46502 * 119.99989 * 0.02562 * 15 13 2 17 17 C 1.46506 * 119.99782 * 180.02562 * 15 13 2 18 18 C 1.50698 * 109.47315 * 90.00147 * 17 15 13 19 19 H 1.08009 * 119.99624 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00262 * 180.02562 * 18 17 15 21 21 N 1.31517 * 119.99551 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00254 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47161 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47304 * 119.99629 * 22 20 18 25 25 H 1.48496 * 109.47133 * 239.99860 * 22 20 18 26 26 H 1.09001 * 109.46965 * 60.00742 * 1 2 3 27 27 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47326 * 299.99900 * 1 2 3 29 29 H 1.08994 * 110.83103 * 33.85826 * 9 7 5 30 30 H 1.08999 * 110.92148 * 270.19704 * 9 7 5 31 31 H 1.09002 * 109.83024 * 219.18066 * 10 9 7 32 32 H 1.08996 * 109.83002 * 98.29659 * 10 9 7 33 33 H 1.08996 * 110.30866 * 143.34644 * 12 11 10 34 34 H 1.08998 * 110.30791 * 265.41708 * 12 11 10 35 35 H 1.08995 * 109.46637 * 89.99818 * 16 15 13 36 36 H 1.09002 * 109.47103 * 210.00034 * 16 15 13 37 37 H 1.08998 * 109.46934 * 330.00270 * 16 15 13 38 38 H 1.08999 * 109.46723 * 209.99975 * 17 15 13 39 39 H 1.09001 * 109.47246 * 329.99792 * 17 15 13 40 40 H 0.97003 * 119.99783 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0639 -2.2810 6 8 1.9974 1.2516 -2.2506 7 6 2.7183 -0.5774 -3.5494 8 1 2.0031 -1.3086 -3.9262 9 6 3.0445 0.4925 -4.6290 10 6 4.1442 -0.2055 -5.4577 11 8 4.7224 -1.2283 -4.6386 12 6 4.1131 -1.2183 -3.3378 13 6 2.0323 -0.7104 1.2305 14 8 2.7296 -1.6964 1.1193 15 7 1.7067 -0.2498 2.4546 16 6 0.8640 0.9410 2.5889 17 6 2.1954 -0.9401 3.6508 18 6 3.5228 -0.3561 4.0608 19 1 3.9589 0.4486 3.4873 20 6 4.1809 -0.8495 5.1672 21 7 3.6500 -1.8297 5.8652 22 14 5.8259 -0.1251 5.6758 23 1 6.2022 0.9586 4.7328 24 1 5.7195 0.4284 7.0497 25 1 6.8638 -1.1867 5.6487 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.4254 1.4041 -4.1686 30 1 2.1700 0.7036 -5.2444 31 1 4.9089 0.5178 -5.7410 32 1 3.7071 -0.6506 -6.3515 33 1 4.0088 -2.2357 -2.9610 34 1 4.7058 -0.6185 -2.6471 35 1 -0.1838 0.6427 2.6224 36 1 1.1217 1.4667 3.5084 37 1 1.0271 1.5996 1.7359 38 1 1.4775 -0.8148 4.4614 39 1 2.3169 -2.0014 3.4338 40 1 4.1129 -2.1767 6.6439 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910051644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:38 Heat of formation + Delta-G solvation = -181.204607 kcal Electronic energy + Delta-G solvation = -23127.223929 eV Core-core repulsion = 19520.835863 eV Total energy + Delta-G solvation = -3606.388066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.16891 -40.83570 -39.90699 -37.72832 -36.74756 -34.95265 -33.73083 -32.84561 -30.52973 -29.55918 -27.76320 -26.18805 -25.36145 -23.97248 -23.18505 -21.52597 -20.49378 -19.23778 -18.70672 -18.27211 -17.99949 -17.52974 -17.14309 -16.91157 -16.48410 -16.16094 -15.71285 -15.49111 -14.90655 -14.71737 -14.58353 -14.29221 -14.05263 -13.74181 -13.59992 -13.45479 -13.34074 -13.02666 -12.84323 -12.64416 -12.54668 -12.50373 -12.43323 -12.23353 -12.06187 -11.94880 -11.71714 -11.63690 -10.66984 -10.64865 -10.61734 -9.53741 -8.25687 -6.40236 0.90499 1.19196 1.35149 1.37780 1.48908 1.59664 2.26593 2.40023 2.80959 3.04516 3.09654 3.36634 3.55427 3.67146 3.74824 3.82688 3.96653 4.04911 4.18066 4.30427 4.51280 4.60556 4.61902 4.65870 4.67639 4.81957 4.86040 4.86941 4.93747 5.04833 5.09059 5.17341 5.24538 5.49290 5.76104 5.86094 6.01512 6.43584 6.59640 6.68783 7.18264 7.33907 8.81822 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019446 B = 0.004037 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.563370 B = 6933.888405 C = 7791.657361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.078 3.922 3 H 0.114 0.886 4 O -0.340 6.340 5 C 0.474 3.526 6 O -0.519 6.519 7 C -0.115 4.115 8 H 0.154 0.846 9 C -0.132 4.132 10 C 0.045 3.955 11 O -0.396 6.396 12 C 0.065 3.935 13 C 0.498 3.502 14 O -0.578 6.578 15 N -0.599 5.599 16 C 0.067 3.933 17 C 0.260 3.740 18 C -0.547 4.547 19 H 0.051 0.949 20 C 0.011 3.989 21 N -0.925 5.925 22 Si 0.967 3.033 23 H -0.270 1.270 24 H -0.267 1.267 25 H -0.281 1.281 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.034 0.966 39 H 0.001 0.999 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 7.224 -19.891 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 H 0.132 0.868 4 O -0.256 6.256 5 C 0.318 3.682 6 O -0.408 6.408 7 C -0.133 4.133 8 H 0.171 0.829 9 C -0.169 4.169 10 C -0.030 4.030 11 O -0.316 6.316 12 C -0.012 4.012 13 C 0.285 3.715 14 O -0.458 6.458 15 N -0.331 5.331 16 C -0.074 4.074 17 C 0.139 3.861 18 C -0.586 4.586 19 H 0.070 0.930 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.791 3.209 23 H -0.194 1.194 24 H -0.192 1.192 25 H -0.207 1.207 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.952 6.837 -19.793 22.064 hybrid contribution 0.819 0.239 0.962 1.286 sum -6.133 7.076 -18.831 21.030 Atomic orbital electron populations 1.22412 0.89056 1.04634 1.06249 1.22551 0.97990 0.96604 0.80847 0.86814 1.86625 1.76682 1.42294 1.19990 1.23784 0.73583 0.85601 0.85259 1.90637 1.48811 1.16969 1.84394 1.22914 1.00031 1.00739 0.89665 0.82890 1.23158 1.00968 0.97247 0.95557 1.23406 0.95352 0.90044 0.94244 1.88437 1.63090 1.56299 1.23798 1.23255 0.89733 1.02448 0.85749 1.20669 0.80719 0.84889 0.85200 1.90668 1.39546 1.28699 1.86868 1.48046 1.50094 1.29578 1.05420 1.22252 0.94762 0.86288 1.04126 1.18850 0.93937 0.91814 0.81480 1.21724 1.06012 1.19249 1.11589 0.93030 1.25817 1.01700 0.95191 0.96174 1.70044 1.40586 1.27042 1.18809 0.85384 0.78799 0.78274 0.78449 1.19395 1.19172 1.20725 0.89256 0.91223 0.86980 0.90314 0.86418 0.90006 0.88362 0.87868 0.93031 0.89496 0.90700 0.89341 0.94801 0.98049 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 9.18 71.98 0.66 -3.07 16 2 C 0.08 2.45 2.18 29.85 0.06 2.52 16 3 H 0.11 3.38 6.42 -2.39 -0.02 3.37 16 4 O -0.34 -10.83 9.40 -45.04 -0.42 -11.26 16 5 C 0.47 12.45 7.24 71.24 0.52 12.97 16 6 O -0.52 -14.86 15.02 21.96 0.33 -14.53 16 7 C -0.11 -2.19 3.59 -10.03 -0.04 -2.22 16 8 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 9 C -0.13 -1.96 6.14 31.91 0.20 -1.77 16 10 C 0.05 0.66 7.79 72.45 0.56 1.22 16 11 O -0.40 -8.83 11.36 -148.98 -1.69 -10.52 16 12 C 0.06 1.48 7.24 72.65 0.53 2.01 16 13 C 0.50 21.37 7.15 87.66 0.63 22.00 16 14 O -0.58 -31.00 16.08 15.77 0.25 -30.75 16 15 N -0.60 -25.15 2.86 -851.12 -2.43 -27.58 16 16 C 0.07 1.90 8.80 127.77 1.12 3.03 16 17 C 0.26 13.88 5.16 85.63 0.44 14.32 16 18 C -0.55 -31.55 9.39 25.60 0.24 -31.31 16 19 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 20 C 0.01 0.61 5.46 84.65 0.46 1.07 16 21 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 22 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.11 2.07 4.53 -2.39 -0.01 2.06 16 29 H 0.08 1.41 7.48 -2.39 -0.02 1.39 16 30 H 0.12 1.16 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 1.34 8.02 -2.39 -0.02 1.32 16 35 H 0.09 1.89 6.95 -2.39 -0.02 1.87 16 36 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 37 H 0.09 1.99 6.00 -2.39 -0.01 1.98 16 38 H 0.03 1.80 8.07 -2.39 -0.02 1.78 16 39 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 40 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -77.68 334.29 4.78 -72.91 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.04 Total: 9.21 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 5.39 Total: 20.76 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.15 Total: -82.83 kcal Atomic # 8 Polarization: -65.52 SS G_CDS: -1.53 Total: -67.05 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -77.68 4.78 -72.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910051644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.299 kcal (2) G-P(sol) polarization free energy of solvation -77.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds