Wall clock time and date at job start Tue Mar 31 2020 03:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 119.99860 * 2 1 4 4 N 1.34777 * 120.00080 * 180.02562 * 2 1 3 5 5 C 1.46507 * 119.99630 * 180.02562 * 4 2 1 6 6 C 1.50701 * 109.46418 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00424 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99476 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99589 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.45153 * 35.02767 * 9 8 6 11 11 C 1.53043 * 109.45577 * 275.06291 * 9 8 6 12 12 C 1.53194 * 109.31689 * 301.34844 * 11 9 8 13 13 N 1.46931 * 108.77251 * 305.36830 * 12 11 9 14 14 C 1.36936 * 120.62728 * 233.60968 * 13 12 11 15 15 H 1.07997 * 120.00481 * 27.67733 * 14 13 12 16 16 C 1.38817 * 119.99703 * 207.68603 * 14 13 12 17 17 N 1.31619 * 120.00022 * 17.34735 * 16 14 13 18 18 Si 1.86794 * 119.99665 * 197.35806 * 16 14 13 19 19 H 1.48501 * 109.47584 * 59.99354 * 18 16 14 20 20 H 1.48497 * 109.47225 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47222 * 299.99253 * 18 16 14 22 22 C 1.46922 * 118.74125 * 53.60669 * 13 12 11 23 23 C 1.53044 * 109.45692 * 155.00076 * 9 8 6 24 24 H 1.08998 * 109.49145 * 178.60689 * 23 9 8 25 25 O 1.42901 * 109.49447 * 298.69788 * 23 9 8 26 26 H 1.08999 * 109.47441 * 269.99580 * 1 2 3 27 27 H 1.08998 * 109.46947 * 29.99832 * 1 2 3 28 28 H 1.08998 * 109.47116 * 149.99688 * 1 2 3 29 29 H 0.96992 * 119.99886 * 359.97438 * 4 2 1 30 30 H 1.08994 * 109.47269 * 60.00441 * 5 4 2 31 31 H 1.08993 * 109.46927 * 299.99716 * 5 4 2 32 32 H 0.96998 * 120.00037 * 359.97438 * 8 6 5 33 33 H 1.08998 * 109.49491 * 61.30232 * 11 9 8 34 34 H 1.09003 * 109.49526 * 181.39814 * 11 9 8 35 35 H 1.09004 * 109.58460 * 65.14800 * 12 11 9 36 36 H 1.08998 * 109.58844 * 185.58193 * 12 11 9 37 37 H 0.97003 * 119.99445 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.58756 * 186.60316 * 22 13 12 39 39 H 1.09005 * 109.58902 * 66.18054 * 22 13 12 40 40 H 0.96701 * 113.99717 * 180.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1482 -2.5879 -0.0013 7 8 3.3601 -3.5098 -0.0022 8 7 5.4734 -2.8342 -0.0006 9 6 5.9617 -4.2154 -0.0025 10 1 5.2897 -4.8371 -0.5941 11 6 6.0103 -4.7409 1.4340 12 6 6.9283 -3.8444 2.2708 13 7 8.2396 -3.7648 1.6127 14 6 9.3848 -4.0651 2.3007 15 1 9.3518 -4.7587 3.1279 16 6 10.5883 -3.4779 1.9350 17 7 10.5920 -2.4009 1.1784 18 14 12.2025 -4.2164 2.5164 19 1 12.3173 -5.6105 2.0177 20 1 13.3334 -3.4091 1.9925 21 1 12.2403 -4.2171 4.0009 22 6 8.2986 -3.3571 0.2024 23 6 7.3652 -4.2591 -0.6112 24 1 7.7390 -5.2828 -0.5903 25 8 7.3136 -3.7970 -1.9624 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6959 -2.0072 -0.0005 30 1 4.0089 -0.6539 0.8905 31 1 4.0095 -0.6527 -0.8894 32 1 6.1037 -2.0969 0.0005 33 1 5.0066 -4.7314 1.8590 34 1 6.3969 -5.7600 1.4357 35 1 6.4958 -2.8466 2.3453 36 1 7.0450 -4.2697 3.2676 37 1 11.4330 -1.9908 0.9226 38 1 9.3194 -3.4609 -0.1656 39 1 7.9778 -2.3196 0.1082 40 1 8.1701 -3.7981 -2.4114 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099630076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:08 Heat of formation + Delta-G solvation = -128.762339 kcal Electronic energy + Delta-G solvation = -23333.901437 eV Core-core repulsion = 19762.080189 eV Total energy + Delta-G solvation = -3571.821248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.48008 -40.47669 -39.31078 -36.85412 -35.84224 -35.41204 -33.76917 -31.81868 -31.04108 -30.47406 -28.08769 -26.94897 -24.06176 -23.49420 -22.18382 -21.63141 -20.29519 -19.04895 -18.64789 -18.07577 -17.47824 -17.27626 -17.03143 -16.75202 -16.29805 -15.95879 -15.74876 -15.46425 -15.08450 -14.92354 -14.48151 -14.20024 -13.97995 -13.72907 -13.52394 -13.30578 -13.24575 -12.92044 -12.86981 -12.69009 -12.62815 -12.21138 -11.98841 -11.82931 -11.30176 -11.12283 -11.04325 -10.89833 -10.57853 -10.30070 -10.06130 -8.71063 -7.90165 -5.35434 1.47127 1.48670 1.50573 1.56786 1.61187 1.81018 2.48571 2.51220 3.13193 3.26728 3.58309 3.66401 3.92042 3.96846 4.13914 4.25792 4.27907 4.34532 4.36754 4.46404 4.55561 4.69033 4.71667 4.88284 4.95037 5.06863 5.08271 5.16872 5.26373 5.31882 5.48005 5.59599 5.65700 6.34685 6.42567 6.49668 6.82092 7.06590 7.12443 7.18060 7.80573 8.31397 9.15124 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.026477 B = 0.003777 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.273424 B = 7411.239126 C = 7640.619063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.506 3.494 3 O -0.598 6.598 4 N -0.712 5.712 5 C 0.101 3.899 6 C 0.515 3.485 7 O -0.570 6.570 8 N -0.698 5.698 9 C 0.169 3.831 10 H 0.081 0.919 11 C -0.131 4.131 12 C 0.145 3.855 13 N -0.603 5.603 14 C -0.267 4.267 15 H 0.067 0.933 16 C -0.043 4.043 17 N -0.928 5.928 18 Si 0.963 3.037 19 H -0.278 1.278 20 H -0.295 1.295 21 H -0.279 1.279 22 C 0.155 3.845 23 C 0.084 3.916 24 H 0.063 0.937 25 O -0.574 6.574 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.418 0.582 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.407 0.593 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.018 0.982 36 H 0.056 0.944 37 H 0.251 0.749 38 H 0.064 0.936 39 H 0.012 0.988 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.190 -1.070 -3.930 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.296 3.704 3 O -0.480 6.480 4 N -0.368 5.368 5 C -0.027 4.027 6 C 0.302 3.698 7 O -0.450 6.450 8 N -0.349 5.349 9 C 0.064 3.936 10 H 0.099 0.901 11 C -0.171 4.171 12 C 0.019 3.981 13 N -0.328 5.328 14 C -0.397 4.397 15 H 0.085 0.915 16 C -0.239 4.239 17 N -0.574 5.574 18 Si 0.792 3.208 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.205 1.205 22 C 0.029 3.971 23 C 0.023 3.977 24 H 0.081 0.919 25 O -0.380 6.380 26 H 0.130 0.870 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.258 0.742 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.030 0.970 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -15.797 -0.854 -3.844 16.281 hybrid contribution 2.080 -0.212 0.203 2.101 sum -13.718 -1.066 -3.640 14.232 Atomic orbital electron populations 1.21890 0.87400 1.06363 1.06426 1.21689 0.92530 0.82154 0.74069 1.90721 1.72129 1.32979 1.52124 1.45866 1.05626 1.10328 1.74949 1.21005 0.83042 0.93321 1.05299 1.20609 0.82562 0.91258 0.75384 1.90637 1.55603 1.46673 1.52108 1.45903 1.06661 1.09374 1.72977 1.20762 0.93583 0.82931 0.96311 0.90145 1.22256 1.00119 1.00290 0.94424 1.20999 0.85373 0.96424 0.95276 1.44169 1.01781 1.79825 1.06977 1.19453 0.86609 1.19375 1.14251 0.91497 1.25704 1.01303 0.96016 1.00884 1.70137 1.25935 1.19725 1.41585 0.85407 0.79521 0.77842 0.78040 1.20412 1.22156 1.20498 1.21226 0.98305 0.93804 0.83766 1.22598 0.95179 0.97990 0.81973 0.91910 1.86384 1.37260 1.89320 1.25059 0.86990 0.88321 0.87648 0.74249 0.88138 0.87938 0.75599 0.90593 0.90566 0.96356 0.92565 0.93974 0.91731 0.96996 0.75906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 10.30 71.23 0.73 -1.15 16 2 C 0.51 11.21 7.94 87.66 0.70 11.91 16 3 O -0.60 -18.91 17.10 -3.04 -0.05 -18.96 16 4 N -0.71 -15.32 5.53 -466.79 -2.58 -17.90 16 5 C 0.10 2.45 6.15 85.63 0.53 2.98 16 6 C 0.52 14.56 7.86 87.66 0.69 15.24 16 7 O -0.57 -18.16 15.33 -3.04 -0.05 -18.21 16 8 N -0.70 -21.00 4.15 -442.38 -1.84 -22.84 16 9 C 0.17 5.45 2.47 45.02 0.11 5.56 16 10 H 0.08 2.65 7.58 -2.39 -0.02 2.64 16 11 C -0.13 -4.22 5.77 30.67 0.18 -4.04 16 12 C 0.14 5.55 6.26 86.36 0.54 6.10 16 13 N -0.60 -27.57 2.99 -699.08 -2.09 -29.67 16 14 C -0.27 -13.72 9.59 84.03 0.81 -12.91 16 15 H 0.07 3.38 7.89 -2.91 -0.02 3.36 16 16 C -0.04 -2.25 4.91 84.86 0.42 -1.83 16 17 N -0.93 -51.09 11.19 21.65 0.24 -50.85 16 18 Si 0.96 42.54 29.59 68.60 2.03 44.57 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 C 0.16 6.61 4.64 86.36 0.40 7.01 16 23 C 0.08 2.87 3.36 30.67 0.10 2.97 16 24 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 25 O -0.57 -17.84 13.21 -148.98 -1.97 -19.81 16 26 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.42 7.99 7.44 -92.71 -0.69 7.30 16 30 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.41 12.53 6.87 -92.71 -0.64 11.89 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.02 0.72 7.74 -2.38 -0.02 0.70 16 36 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 37 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 38 H 0.06 3.13 6.04 -2.39 -0.01 3.12 16 39 H 0.01 0.54 6.64 -2.38 -0.02 0.52 16 40 H 0.39 9.68 9.08 -74.06 -0.67 9.01 16 Total: -1.00 -67.09 330.30 -2.02 -69.11 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.91 Total: 32.72 kcal Atomic # 6 Polarization: 26.63 SS G_CDS: 5.20 Total: 31.83 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -6.27 Total: -121.26 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -2.07 Total: -56.98 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -67.09 -2.02 -69.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099630076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.650 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds