Wall clock time and date at job start Tue Mar 31 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.42895 * 109.47503 * 240.00043 * 2 1 3 5 5 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 6 6 H 1.09001 * 110.88633 * 62.42856 * 5 2 1 7 7 C 1.55153 * 111.01178 * 186.35061 * 5 2 1 8 8 C 1.54322 * 102.94790 * 153.57497 * 7 5 2 9 9 N 1.47017 * 107.26967 * 337.81233 * 8 7 5 10 10 C 1.34780 * 125.65028 * 178.90048 * 9 8 7 11 11 O 1.21579 * 120.00307 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99678 * 0.04191 * 10 9 8 13 13 C 1.46500 * 119.99909 * 179.97438 * 12 10 9 14 14 C 1.50709 * 109.46939 * 180.02562 * 13 12 10 15 15 O 1.21290 * 119.99795 * 0.02562 * 14 13 12 16 16 N 1.34770 * 119.99702 * 180.02562 * 14 13 12 17 17 C 1.37100 * 120.00000 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99891 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99944 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00366 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99640 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47223 * 89.99910 * 21 19 17 23 23 H 1.48501 * 109.46785 * 209.99776 * 21 19 17 24 24 H 1.48494 * 109.47389 * 329.99535 * 21 19 17 25 25 C 1.47426 * 108.70627 * 358.93531 * 9 8 7 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96709 * 113.99981 * 300.00021 * 4 2 1 30 30 H 1.09000 * 110.72405 * 271.94712 * 7 5 2 31 31 H 1.09009 * 110.71564 * 35.21031 * 7 5 2 32 32 H 1.08993 * 109.88735 * 218.39165 * 8 7 5 33 33 H 1.09003 * 110.00841 * 97.29631 * 8 7 5 34 34 H 0.96999 * 120.00118 * 0.02562 * 12 10 9 35 35 H 1.08999 * 109.47114 * 299.99650 * 13 12 10 36 36 H 1.09001 * 109.47110 * 60.00110 * 13 12 10 37 37 H 0.97004 * 120.00333 * 359.97438 * 16 14 13 38 38 H 0.96996 * 120.00232 * 179.97438 * 20 19 17 39 39 H 1.08998 * 110.36991 * 265.29227 * 25 9 8 40 40 H 1.09000 * 110.45947 * 143.01210 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.7252 -1.7647 1.2513 7 6 3.5826 -0.6047 1.3680 8 6 3.8232 -0.7339 2.8869 9 7 2.5681 -0.3697 3.5601 10 6 2.3606 -0.3754 4.8919 11 8 1.2769 -0.0543 5.3397 12 7 3.3547 -0.7369 5.7271 13 6 3.1294 -0.7427 7.1746 14 6 4.3886 -1.1809 7.8772 15 8 5.3770 -1.4604 7.2322 16 7 4.4163 -1.2622 9.2222 17 6 5.5617 -1.6613 9.8614 18 1 6.4418 -1.9102 9.2871 19 6 5.5901 -1.7457 11.2480 20 7 4.5193 -1.4424 11.9469 21 14 7.1509 -2.2888 12.1188 22 1 7.9879 -1.1002 12.4220 23 1 6.7965 -2.9804 13.3843 24 1 7.9090 -3.2176 11.2427 25 6 1.5735 0.0021 2.5373 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.7211 -1.5953 -1.2329 30 1 4.0732 -1.4155 0.8294 31 1 3.9253 0.3640 1.0042 32 1 4.6193 -0.0563 3.1951 33 1 4.0931 -1.7602 3.1358 34 1 4.2195 -0.9926 5.3698 35 1 2.8602 0.2607 7.5044 36 1 2.3205 -1.4330 7.4137 37 1 3.6260 -1.0383 9.7381 38 1 4.5390 -1.5016 12.9148 39 1 1.5701 1.0816 2.3862 40 1 0.5811 -0.3428 2.8278 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117477704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:41 Heat of formation + Delta-G solvation = -121.936452 kcal Electronic energy + Delta-G solvation = -22292.106566 eV Core-core repulsion = 18720.581311 eV Total energy + Delta-G solvation = -3571.525255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.36483 -38.87006 -38.06961 -36.60295 -34.43674 -33.67784 -32.42065 -31.37014 -30.64526 -28.54384 -27.31619 -24.83040 -23.80437 -22.49183 -20.97608 -19.78346 -19.60061 -18.37768 -17.87698 -17.19836 -16.20017 -15.83558 -15.78994 -15.27817 -14.91087 -14.79016 -14.30466 -14.09646 -13.95195 -13.73231 -13.40431 -13.18548 -12.91507 -12.77145 -12.47370 -12.17471 -11.89261 -11.79301 -11.63233 -11.58723 -11.16334 -11.12545 -10.92319 -10.46096 -10.34541 -10.31991 -10.02460 -9.63609 -8.93487 -8.62601 -8.45454 -8.09916 -6.51297 -3.93362 2.65341 3.11638 3.22020 3.27394 3.35556 3.75132 3.79541 4.04410 4.17837 4.23667 4.33826 4.49921 4.83006 4.83726 4.89668 4.90841 5.05377 5.16781 5.17387 5.36432 5.44552 5.57048 5.59178 5.65165 5.70019 5.78544 5.89980 5.94834 6.00691 6.07528 6.21668 6.75511 7.15358 7.23950 7.46078 7.92509 8.16186 8.45346 8.77068 9.04724 9.39637 9.87527 10.65642 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.047589 B = 0.002676 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.236131 B =10462.229866 C =10965.609403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.115 3.885 3 H 0.102 0.898 4 O -0.561 6.561 5 C -0.137 4.137 6 H 0.088 0.912 7 C -0.116 4.116 8 C 0.096 3.904 9 N -0.639 5.639 10 C 0.723 3.277 11 O -0.596 6.596 12 N -0.722 5.722 13 C 0.128 3.872 14 C 0.429 3.571 15 O -0.598 6.598 16 N -0.549 5.549 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.269 1.269 25 C 0.135 3.865 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.375 0.625 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.065 0.935 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 1.614 -21.055 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.056 3.944 3 H 0.120 0.880 4 O -0.366 6.366 5 C -0.156 4.156 6 H 0.106 0.894 7 C -0.154 4.154 8 C -0.028 4.028 9 N -0.379 5.379 10 C 0.424 3.576 11 O -0.475 6.475 12 N -0.379 5.379 13 C -0.001 4.001 14 C 0.215 3.785 15 O -0.485 6.485 16 N -0.184 5.184 17 C -0.434 4.434 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.760 3.240 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 C 0.012 3.988 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.222 0.778 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.245 0.755 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.250 2.236 -20.890 21.919 hybrid contribution 0.402 -0.791 0.950 1.301 sum -5.848 1.444 -19.940 20.830 Atomic orbital electron populations 1.22560 0.96136 1.02852 1.03143 1.21831 0.92967 0.96423 0.83183 0.88036 1.86602 1.77272 1.29183 1.43534 1.23171 0.96577 1.00940 0.94952 0.89360 1.22577 0.95069 1.03459 0.94296 1.22057 0.87118 1.00903 0.92696 1.47459 1.14192 1.72494 1.03742 1.15348 0.84163 0.78624 0.79442 1.90902 1.24705 1.56452 1.75416 1.44784 1.15293 1.71944 1.05885 1.20805 0.97468 1.02569 0.79216 1.19749 0.89356 0.85876 0.83549 1.90487 1.36323 1.56340 1.65323 1.41787 1.14685 1.57618 1.04301 1.19726 0.91965 1.42172 0.89550 0.87693 1.25329 0.98786 0.97121 0.96511 1.69614 1.28436 1.47707 1.07732 0.85809 0.80813 0.78855 0.78527 1.20264 1.20797 1.19331 1.21953 0.92785 0.98807 0.85262 0.92138 0.91673 0.91052 0.77798 0.89748 0.90282 0.91257 0.91338 0.75529 0.89978 0.89983 0.76999 0.91585 0.91655 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 9.33 37.16 0.35 -0.73 16 2 C 0.12 0.74 3.11 -26.73 -0.08 0.66 16 3 H 0.10 0.68 8.11 -51.93 -0.42 0.26 16 4 O -0.56 -3.90 13.19 -35.23 -0.46 -4.37 16 5 C -0.14 -1.01 2.79 -88.47 -0.25 -1.25 16 6 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 7 C -0.12 -0.89 6.28 -24.90 -0.16 -1.05 16 8 C 0.10 0.99 6.15 -3.07 -0.02 0.98 16 9 N -0.64 -8.47 3.33 -176.24 -0.59 -9.05 16 10 C 0.72 12.52 8.49 -86.92 -0.74 11.78 16 11 O -0.60 -12.13 16.60 5.30 0.09 -12.05 16 12 N -0.72 -12.82 5.49 -66.41 -0.36 -13.19 16 13 C 0.13 2.45 6.15 -5.19 -0.03 2.41 16 14 C 0.43 9.97 7.85 -10.98 -0.09 9.89 16 15 O -0.60 -15.43 15.24 5.55 0.08 -15.35 16 16 N -0.55 -13.73 5.29 -10.96 -0.06 -13.78 16 17 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 18 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.89 -23.98 13.05 55.50 0.72 -23.26 16 21 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 C 0.14 1.40 5.34 -2.52 -0.01 1.38 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.42 7.27 -51.93 -0.38 0.04 16 29 H 0.37 1.37 9.05 45.56 0.41 1.78 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.59 8.01 -51.92 -0.42 0.17 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.41 7.10 6.42 -40.82 -0.26 6.84 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.40 9.53 7.90 -40.82 -0.32 9.20 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 40 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -33.03 337.06 -6.90 -39.93 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -5.11 Total: 14.30 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: -1.27 Total: 16.18 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.28 Total: -59.28 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.29 Total: -31.76 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.03 -6.90 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117477704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.007 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds