Wall clock time and date at job start Tue Mar 31 2020 02:58:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86793 * 120.00306 * 2 1
4 4 H 1.48499 * 109.47433 * 270.00193 * 3 2 1
5 5 H 1.48511 * 109.46835 * 30.00089 * 3 2 1
6 6 H 1.48501 * 109.47183 * 149.99841 * 3 2 1
7 7 C 1.38814 * 119.99730 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00178 * 179.97438 * 7 2 1
9 9 N 1.36939 * 119.99864 * 359.97438 * 7 2 1
10 10 C 1.46500 * 119.99607 * 180.02562 * 9 7 2
11 11 C 1.53005 * 109.47149 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 9
13 13 N 1.46497 * 109.46983 * 179.97438 * 12 11 10
14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 11
15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12
16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12
17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 13
18 18 C 1.46090 * 118.73150 * 269.73105 * 17 16 14
19 19 C 1.53212 * 109.82368 * 161.46912 * 18 17 16
20 20 O 1.43244 * 108.51523 * 49.53969 * 19 18 17
21 21 C 1.42967 * 112.98866 * 291.46089 * 20 19 18
22 22 C 1.33875 * 118.72875 * 89.99927 * 17 16 14
23 23 O 1.21281 * 118.83234 * 1.88741 * 22 17 16
24 24 H 0.97006 * 119.99942 * 0.02562 * 1 2 3
25 25 H 0.96998 * 120.00490 * 359.97438 * 9 7 2
26 26 H 1.08998 * 109.48027 * 59.99428 * 10 9 7
27 27 H 1.09002 * 109.46704 * 299.99128 * 10 9 7
28 28 H 1.09001 * 109.46812 * 59.99364 * 11 10 9
29 29 H 1.09002 * 109.46935 * 299.99706 * 11 10 9
30 30 H 1.09001 * 109.46832 * 59.99801 * 12 11 10
31 31 H 1.09002 * 109.47153 * 299.99992 * 12 11 10
32 32 H 0.96995 * 120.00423 * 359.97438 * 13 12 11
33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13
34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13
35 35 H 1.09000 * 109.39695 * 281.78226 * 18 17 16
36 36 H 1.08997 * 109.39233 * 41.50373 * 18 17 16
37 37 H 1.08998 * 109.82662 * 289.74653 * 19 18 17
38 38 H 1.09001 * 109.66875 * 169.23971 * 19 18 17
39 39 H 1.09003 * 109.41084 * 289.49619 * 21 20 19
40 40 H 1.08991 * 109.35901 * 169.66659 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6176 0.0000
4 1 2.4978 2.0464 -1.4000
5 1 1.4476 2.6526 0.7001
6 1 3.5478 1.4400 0.7001
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0010
9 7 1.3254 -2.3881 -0.0005
10 6 2.0579 -3.6568 -0.0005
11 6 1.0637 -4.8198 0.0001
12 6 1.8286 -6.1448 -0.0005
13 7 0.8765 -7.2582 0.0007
14 6 1.3258 -8.5289 0.0009
15 8 2.5181 -8.7507 -0.0004
16 6 0.3464 -9.6744 0.0016
17 7 1.0789 -10.9431 0.0011
18 6 1.4239 -11.5543 -1.2801
19 6 2.5456 -12.5789 -1.0818
20 8 2.1861 -13.4426 0.0030
21 6 2.1871 -12.7787 1.2692
22 6 1.4015 -11.5004 1.1748
23 8 1.0469 -10.9549 2.1984
24 1 -0.4850 0.8401 -0.0004
25 1 0.3555 -2.3881 0.0002
26 1 2.6847 -3.7147 0.8893
27 1 2.6845 -3.7145 -0.8906
28 1 0.4366 -4.7621 -0.8896
29 1 0.4374 -4.7618 0.8904
30 1 2.4559 -6.2026 0.8890
31 1 2.4546 -6.2025 -0.8910
32 1 -0.0771 -7.0810 0.0021
33 1 -0.2799 -9.6163 0.8918
34 1 -0.2806 -9.6169 -0.8882
35 1 0.5453 -12.0498 -1.6932
36 1 1.7601 -10.7812 -1.9711
37 1 3.4780 -12.0655 -0.8469
38 1 2.6707 -13.1666 -1.9912
39 1 3.2133 -12.5527 1.5590
40 1 1.7338 -13.4282 2.0180
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001160016601.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:58:07
Heat of formation + Delta-G solvation = -97.654188 kcal
Electronic energy + Delta-G solvation = -21978.412483 eV
Core-core repulsion = 18407.940186 eV
Total energy + Delta-G solvation = -3570.472297 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.19399 -39.49856 -38.03506 -36.22595 -35.54935 -34.37267 -32.10362 -30.86678
-30.03999 -29.05405 -26.63320 -24.96270 -24.26578 -22.61037 -21.27738 -20.61847
-19.46427 -18.12913 -17.74895 -17.40526 -16.95583 -16.22785 -15.98043 -15.90591
-15.53654 -14.94035 -14.72173 -14.50875 -14.37177 -13.87553 -13.63422 -13.46877
-13.28843 -13.00769 -12.74557 -12.19651 -12.13565 -11.77117 -11.67942 -11.01594
-10.96639 -10.93910 -10.80750 -10.64367 -10.30244 -10.07261 -9.84735 -9.72982
-9.13496 -9.11741 -8.89660 -6.95438 -5.78862 -3.07902 2.05246 2.32739
2.47647 3.13797 3.28843 3.42915 3.48017 3.49905 3.87511 4.25818
4.50274 4.57400 4.59420 4.62889 4.74927 4.88892 4.94865 5.03550
5.09545 5.12782 5.24659 5.27694 5.55723 5.59234 5.70882 5.94270
6.03108 6.16270 6.27659 6.29320 6.38934 6.76150 6.80505 6.88236
7.36301 7.64484 7.68582 8.07604 8.40110 9.51217 10.08051 10.42801
11.44154
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.050604 B = 0.002244 C = 0.002231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 553.180363 B =12475.134875 C =12549.466093
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.015 4.015
3 Si 0.909 3.091
4 H -0.289 1.289
5 H -0.291 1.291
6 H -0.281 1.281
7 C -0.240 4.240
8 H 0.071 0.929
9 N -0.734 5.734
10 C 0.157 3.843
11 C -0.137 4.137
12 C 0.124 3.876
13 N -0.725 5.725
14 C 0.496 3.504
15 O -0.537 6.537
16 C 0.089 3.911
17 N -0.587 5.587
18 C 0.083 3.917
19 C 0.043 3.957
20 O -0.372 6.372
21 C 0.052 3.948
22 C 0.494 3.506
23 O -0.537 6.537
24 H 0.255 0.745
25 H 0.384 0.616
26 H 0.021 0.979
27 H 0.021 0.979
28 H 0.069 0.931
29 H 0.069 0.931
30 H 0.068 0.932
31 H 0.068 0.932
32 H 0.402 0.598
33 H 0.118 0.882
34 H 0.110 0.890
35 H 0.079 0.921
36 H 0.088 0.912
37 H 0.069 0.931
38 H 0.117 0.883
39 H 0.094 0.906
40 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.208 -28.477 -3.586 28.703
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.211 4.211
3 Si 0.740 3.260
4 H -0.217 1.217
5 H -0.217 1.217
6 H -0.207 1.207
7 C -0.371 4.371
8 H 0.089 0.911
9 N -0.378 5.378
10 C 0.028 3.972
11 C -0.176 4.176
12 C 0.000 4.000
13 N -0.377 5.377
14 C 0.280 3.720
15 O -0.414 6.414
16 C -0.038 4.038
17 N -0.321 5.321
18 C -0.040 4.040
19 C -0.034 4.034
20 O -0.290 6.290
21 C -0.027 4.027
22 C 0.281 3.719
23 O -0.414 6.414
24 H 0.065 0.935
25 H 0.217 0.783
26 H 0.039 0.961
27 H 0.039 0.961
28 H 0.087 0.913
29 H 0.088 0.912
30 H 0.086 0.914
31 H 0.086 0.914
32 H 0.236 0.764
33 H 0.136 0.864
34 H 0.128 0.872
35 H 0.097 0.903
36 H 0.106 0.894
37 H 0.087 0.913
38 H 0.135 0.865
39 H 0.111 0.889
40 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 1.003 -28.449 -3.065 28.631
hybrid contribution -0.266 1.504 -0.098 1.531
sum 0.737 -26.945 -3.162 27.140
Atomic orbital electron populations
1.69662 1.05140 1.25706 1.57814 1.24762 0.95575 0.97789 1.02976
0.86156 0.78660 0.83653 0.77534 1.21678 1.21726 1.20711 1.19245
0.91103 0.84111 1.42682 0.91097 1.42338 1.05869 0.99986 1.89620
1.20516 0.93263 0.85199 0.98190 1.21948 0.99587 0.93265 1.02773
1.21361 0.91713 0.84545 1.02400 1.46042 1.10875 1.05665 1.75087
1.21043 0.90181 0.84327 0.76407 1.90692 1.16750 1.84718 1.49212
1.21385 0.94009 0.82291 1.06104 1.47025 1.57000 1.21558 1.06479
1.22235 0.99411 0.97022 0.85353 1.23057 0.96440 0.92340 0.91521
1.88180 1.90078 1.35727 1.14982 1.22827 1.00836 0.91323 0.87697
1.21015 0.80155 0.87503 0.83180 1.90761 1.53231 1.63716 1.33727
0.93489 0.78290 0.96068 0.96087 0.91257 0.91213 0.91406 0.91383
0.76406 0.86371 0.87162 0.90297 0.89351 0.91261 0.86500 0.88869
0.85066
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16
2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16
3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16
4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16
6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16
8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16
9 N -0.73 -18.75 5.60 -59.91 -0.34 -19.08 16
10 C 0.16 3.13 6.26 -4.04 -0.03 3.11 16
11 C -0.14 -2.09 5.44 -26.73 -0.15 -2.23 16
12 C 0.12 1.68 5.67 -4.04 -0.02 1.66 16
13 N -0.72 -8.11 5.56 -60.30 -0.33 -8.45 16
14 C 0.50 6.07 7.89 -10.98 -0.09 5.98 16
15 O -0.54 -8.66 16.43 5.56 0.09 -8.57 16
16 C 0.09 0.78 5.80 -5.19 -0.03 0.75 16
17 N -0.59 -5.54 2.32 -175.67 -0.41 -5.95 16
18 C 0.08 0.51 6.63 -4.15 -0.03 0.49 16
19 C 0.04 0.25 6.91 37.27 0.26 0.51 16
20 O -0.37 -2.86 10.85 -35.23 -0.38 -3.24 16
21 C 0.05 0.42 6.98 35.83 0.25 0.67 16
22 C 0.49 5.56 7.58 -11.56 -0.09 5.47 16
23 O -0.54 -8.01 16.36 5.56 0.09 -7.92 16
24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
25 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16
26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
32 H 0.40 3.37 8.47 -40.82 -0.35 3.02 16
33 H 0.12 1.07 7.24 -51.93 -0.38 0.69 16
34 H 0.11 0.56 8.03 -51.93 -0.42 0.15 16
35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
36 H 0.09 0.52 8.13 -51.93 -0.42 0.09 16
37 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16
38 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16
39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
40 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16
LS Contribution 340.90 15.07 5.14 5.14
Total: -1.00 -37.20 340.90 -6.67 -43.87
By element:
Atomic # 1 Polarization: 11.50 SS G_CDS: -6.07 Total: 5.44 kcal
Atomic # 6 Polarization: 9.05 SS G_CDS: -0.16 Total: 8.89 kcal
Atomic # 7 Polarization: -60.77 SS G_CDS: -0.35 Total: -61.13 kcal
Atomic # 8 Polarization: -19.54 SS G_CDS: -0.20 Total: -19.74 kcal
Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -37.20 -6.67 -43.87 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001160016601.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.782 kcal
(2) G-P(sol) polarization free energy of solvation -37.201 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.873 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.654 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds