Wall clock time and date at job start Tue Mar 31 2020 02:58:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86793 * 120.00306 * 2 1
4 4 H 1.48499 * 109.47433 * 270.00193 * 3 2 1
5 5 H 1.48511 * 109.46835 * 30.00089 * 3 2 1
6 6 H 1.48501 * 109.47183 * 149.99841 * 3 2 1
7 7 C 1.38814 * 119.99730 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00178 * 179.97438 * 7 2 1
9 9 N 1.36939 * 119.99864 * 359.97438 * 7 2 1
10 10 C 1.46500 * 119.99607 * 180.02562 * 9 7 2
11 11 C 1.53005 * 109.47149 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 9
13 13 N 1.46497 * 109.46983 * 179.97438 * 12 11 10
14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 11
15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12
16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12
17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 13
18 18 C 1.46090 * 118.73150 * 269.73105 * 17 16 14
19 19 C 1.53212 * 109.82368 * 161.46912 * 18 17 16
20 20 O 1.43244 * 108.51523 * 49.53969 * 19 18 17
21 21 C 1.42967 * 112.98866 * 291.46089 * 20 19 18
22 22 C 1.33875 * 118.72875 * 89.99927 * 17 16 14
23 23 O 1.21281 * 118.83234 * 1.88741 * 22 17 16
24 24 H 0.97006 * 119.99942 * 0.02562 * 1 2 3
25 25 H 0.96998 * 120.00490 * 359.97438 * 9 7 2
26 26 H 1.08998 * 109.48027 * 59.99428 * 10 9 7
27 27 H 1.09002 * 109.46704 * 299.99128 * 10 9 7
28 28 H 1.09001 * 109.46812 * 59.99364 * 11 10 9
29 29 H 1.09002 * 109.46935 * 299.99706 * 11 10 9
30 30 H 1.09001 * 109.46832 * 59.99801 * 12 11 10
31 31 H 1.09002 * 109.47153 * 299.99992 * 12 11 10
32 32 H 0.96995 * 120.00423 * 359.97438 * 13 12 11
33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13
34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13
35 35 H 1.09000 * 109.39695 * 281.78226 * 18 17 16
36 36 H 1.08997 * 109.39233 * 41.50373 * 18 17 16
37 37 H 1.08998 * 109.82662 * 289.74653 * 19 18 17
38 38 H 1.09001 * 109.66875 * 169.23971 * 19 18 17
39 39 H 1.09003 * 109.41084 * 289.49619 * 21 20 19
40 40 H 1.08991 * 109.35901 * 169.66659 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6176 0.0000
4 1 2.4978 2.0464 -1.4000
5 1 1.4476 2.6526 0.7001
6 1 3.5478 1.4400 0.7001
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0010
9 7 1.3254 -2.3881 -0.0005
10 6 2.0579 -3.6568 -0.0005
11 6 1.0637 -4.8198 0.0001
12 6 1.8286 -6.1448 -0.0005
13 7 0.8765 -7.2582 0.0007
14 6 1.3258 -8.5289 0.0009
15 8 2.5181 -8.7507 -0.0004
16 6 0.3464 -9.6744 0.0016
17 7 1.0789 -10.9431 0.0011
18 6 1.4239 -11.5543 -1.2801
19 6 2.5456 -12.5789 -1.0818
20 8 2.1861 -13.4426 0.0030
21 6 2.1871 -12.7787 1.2692
22 6 1.4015 -11.5004 1.1748
23 8 1.0469 -10.9549 2.1984
24 1 -0.4850 0.8401 -0.0004
25 1 0.3555 -2.3881 0.0002
26 1 2.6847 -3.7147 0.8893
27 1 2.6845 -3.7145 -0.8906
28 1 0.4366 -4.7621 -0.8896
29 1 0.4374 -4.7618 0.8904
30 1 2.4559 -6.2026 0.8890
31 1 2.4546 -6.2025 -0.8910
32 1 -0.0771 -7.0810 0.0021
33 1 -0.2799 -9.6163 0.8918
34 1 -0.2806 -9.6169 -0.8882
35 1 0.5453 -12.0498 -1.6932
36 1 1.7601 -10.7812 -1.9711
37 1 3.4780 -12.0655 -0.8469
38 1 2.6707 -13.1666 -1.9912
39 1 3.2133 -12.5527 1.5590
40 1 1.7338 -13.4282 2.0180
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001160016601.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:58:07
Heat of formation + Delta-G solvation = -127.547785 kcal
Electronic energy + Delta-G solvation = -21979.708766 eV
Core-core repulsion = 18407.940186 eV
Total energy + Delta-G solvation = -3571.768581 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.94773 -40.45299 -38.75063 -37.58487 -36.43278 -35.87962 -33.81467 -31.79854
-31.16785 -30.07377 -27.59432 -26.41904 -24.93645 -24.25718 -22.62043 -21.69665
-20.16955 -19.24901 -18.78370 -18.41731 -18.17217 -17.09269 -16.94434 -16.86938
-16.43326 -16.36121 -15.68993 -15.66564 -15.36474 -15.21730 -14.95073 -14.53267
-14.39304 -14.10338 -13.94139 -13.32770 -13.03666 -12.82170 -12.80172 -12.62197
-12.46141 -12.31576 -12.10026 -12.07119 -11.82033 -11.64492 -11.25053 -10.96618
-10.56699 -10.17091 -9.90222 -9.04302 -7.98510 -5.27930 1.24531 1.46701
1.48419 1.52859 1.57055 1.64780 2.24728 2.55056 2.74763 3.26382
3.35299 3.68525 3.73727 3.79409 4.01313 4.05756 4.13256 4.19208
4.25488 4.34264 4.40058 4.42876 4.48260 4.69101 4.69336 4.71499
4.80421 4.83912 5.08415 5.24586 5.28497 5.37097 5.46829 5.73152
6.18647 6.24273 6.46597 6.85866 7.15526 7.30690 8.04955 8.29062
9.24968
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.050604 B = 0.002244 C = 0.002231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 553.180363 B =12475.134875 C =12549.466093
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.968 5.968
2 C -0.075 4.075
3 Si 0.976 3.024
4 H -0.285 1.285
5 H -0.293 1.293
6 H -0.271 1.271
7 C -0.251 4.251
8 H 0.074 0.926
9 N -0.747 5.747
10 C 0.152 3.848
11 C -0.118 4.118
12 C 0.135 3.865
13 N -0.714 5.714
14 C 0.493 3.507
15 O -0.581 6.581
16 C 0.091 3.909
17 N -0.589 5.589
18 C 0.078 3.922
19 C 0.040 3.960
20 O -0.376 6.376
21 C 0.057 3.943
22 C 0.482 3.518
23 O -0.585 6.585
24 H 0.253 0.747
25 H 0.376 0.624
26 H 0.018 0.982
27 H 0.024 0.976
28 H 0.079 0.921
29 H 0.071 0.929
30 H 0.052 0.948
31 H 0.065 0.935
32 H 0.418 0.582
33 H 0.116 0.884
34 H 0.155 0.845
35 H 0.105 0.895
36 H 0.094 0.906
37 H 0.058 0.942
38 H 0.148 0.852
39 H 0.099 0.901
40 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.137 -29.556 -4.741 29.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.619 5.619
2 C -0.268 4.268
3 Si 0.804 3.196
4 H -0.211 1.211
5 H -0.220 1.220
6 H -0.196 1.196
7 C -0.382 4.382
8 H 0.092 0.908
9 N -0.390 5.390
10 C 0.025 3.975
11 C -0.156 4.156
12 C 0.011 3.989
13 N -0.367 5.367
14 C 0.279 3.721
15 O -0.460 6.460
16 C -0.035 4.035
17 N -0.321 5.321
18 C -0.044 4.044
19 C -0.037 4.037
20 O -0.295 6.295
21 C -0.023 4.023
22 C 0.271 3.729
23 O -0.466 6.466
24 H 0.062 0.938
25 H 0.208 0.792
26 H 0.036 0.964
27 H 0.042 0.958
28 H 0.098 0.902
29 H 0.090 0.910
30 H 0.071 0.929
31 H 0.084 0.916
32 H 0.255 0.745
33 H 0.134 0.866
34 H 0.172 0.828
35 H 0.123 0.877
36 H 0.112 0.888
37 H 0.076 0.924
38 H 0.166 0.834
39 H 0.116 0.884
40 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 0.933 -29.565 -4.261 29.885
hybrid contribution -0.208 1.788 0.217 1.813
sum 0.725 -27.777 -4.044 28.079
Atomic orbital electron populations
1.69807 1.06557 1.26244 1.59259 1.25604 0.96507 1.01204 1.03458
0.85111 0.77651 0.79256 0.77561 1.21146 1.21971 1.19586 1.19640
0.91542 0.85423 1.41627 0.90774 1.42542 1.05752 1.01150 1.89561
1.20674 0.94110 0.84833 0.97878 1.21700 0.98458 0.92069 1.03369
1.21050 0.91729 0.84552 1.01608 1.45896 1.11407 1.04945 1.74498
1.21693 0.90178 0.85051 0.75135 1.90674 1.18770 1.85337 1.51249
1.21528 0.93203 0.80725 1.08080 1.47254 1.56201 1.21444 1.07183
1.22503 1.00668 0.97308 0.83930 1.23262 0.95781 0.92572 0.92071
1.88180 1.90108 1.36063 1.15109 1.22831 1.00673 0.90305 0.88461
1.21631 0.79856 0.88286 0.83092 1.90727 1.55296 1.65229 1.35353
0.93846 0.79188 0.96415 0.95836 0.90243 0.90994 0.92914 0.91627
0.74528 0.86580 0.82758 0.87738 0.88767 0.92354 0.83435 0.88351
0.83718
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16
2 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16
3 Si 0.98 46.25 29.55 68.60 2.03 48.27 16
4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16
5 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16
6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16
7 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16
8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16
9 N -0.75 -38.13 5.60 -343.44 -1.92 -40.06 16
10 C 0.15 6.02 6.26 86.38 0.54 6.56 16
11 C -0.12 -3.45 5.44 30.60 0.17 -3.28 16
12 C 0.14 3.56 5.67 86.38 0.49 4.05 16
13 N -0.71 -14.93 5.56 -463.06 -2.57 -17.50 16
14 C 0.49 11.50 7.89 87.66 0.69 12.20 16
15 O -0.58 -18.58 16.43 -3.03 -0.05 -18.63 16
16 C 0.09 1.43 5.80 85.63 0.50 1.92 16
17 N -0.59 -10.22 2.32 -828.59 -1.92 -12.14 16
18 C 0.08 0.77 6.63 86.53 0.57 1.34 16
19 C 0.04 0.38 6.91 72.05 0.50 0.87 16
20 O -0.38 -5.14 10.85 -148.98 -1.62 -6.76 16
21 C 0.06 0.87 6.98 71.12 0.50 1.36 16
22 C 0.48 10.65 7.58 87.69 0.66 11.31 16
23 O -0.59 -17.72 16.36 -3.03 -0.05 -17.77 16
24 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16
25 H 0.38 20.01 7.67 -92.71 -0.71 19.30 16
26 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16
27 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16
28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16
30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
32 H 0.42 6.09 8.47 -92.71 -0.79 5.30 16
33 H 0.12 1.95 7.24 -2.39 -0.02 1.93 16
34 H 0.15 1.01 8.03 -2.39 -0.02 0.99 16
35 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16
36 H 0.09 0.86 8.13 -2.39 -0.02 0.84 16
37 H 0.06 0.69 8.10 -2.39 -0.02 0.67 16
38 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16
39 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16
40 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16
Total: -1.00 -80.73 340.90 -0.34 -81.07
By element:
Atomic # 1 Polarization: 23.68 SS G_CDS: -0.44 Total: 23.24 kcal
Atomic # 6 Polarization: 13.18 SS G_CDS: 5.92 Total: 19.10 kcal
Atomic # 7 Polarization: -122.39 SS G_CDS: -6.14 Total: -128.53 kcal
Atomic # 8 Polarization: -41.45 SS G_CDS: -1.72 Total: -43.16 kcal
Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal
Total: -80.73 -0.34 -81.07 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001160016601.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.475 kcal
(2) G-P(sol) polarization free energy of solvation -80.734 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.208 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.073 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.548 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds