Wall clock time and date at job start Tue Mar 31 2020 02:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30359 * 119.31549 * 2 1 4 4 C 1.33781 * 122.07634 * 179.97438 * 3 2 1 5 5 C 1.35640 * 120.49051 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.68588 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47460 * 259.99929 * 6 5 4 8 8 C 1.41981 * 118.62696 * 359.97438 * 5 4 3 9 9 N 1.31428 * 120.92978 * 180.02562 * 8 5 4 10 10 N 1.35993 * 119.31229 * 179.97438 * 2 1 3 11 11 C 1.39467 * 120.35147 * 0.04423 * 10 2 1 12 12 C 1.39623 * 119.57048 * 232.19004 * 11 10 2 13 13 C 1.38686 * 119.49710 * 179.97438 * 12 11 10 14 14 C 1.38324 * 118.66445 * 359.97438 * 13 12 11 15 15 C 1.40598 * 119.12354 * 0.02562 * 14 13 12 16 16 C 1.41347 * 119.78796 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00046 * 359.97438 * 16 15 14 18 18 C 1.40029 * 119.99984 * 179.97438 * 16 15 14 19 19 N 1.30747 * 119.99804 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99805 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47203 * 90.00472 * 20 18 16 22 22 H 1.48504 * 109.46771 * 210.00432 * 20 18 16 23 23 H 1.48496 * 109.47352 * 329.99991 * 20 18 16 24 24 N 1.31901 * 119.57347 * 51.91424 * 11 10 2 25 25 H 1.09003 * 109.47058 * 95.38110 * 1 2 3 26 26 H 1.09002 * 109.47016 * 215.37832 * 1 2 3 27 27 H 1.08993 * 109.46748 * 335.38037 * 1 2 3 28 28 H 1.07996 * 119.76053 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.46988 * 20.00112 * 6 5 4 30 30 H 1.09000 * 109.46944 * 140.00102 * 6 5 4 31 31 H 1.00903 * 110.99937 * 56.04363 * 7 6 5 32 32 H 1.00899 * 111.00397 * 180.02562 * 7 6 5 33 33 H 0.97003 * 120.00229 * 0.02562 * 9 8 5 34 34 H 1.07996 * 120.25039 * 359.97438 * 12 11 10 35 35 H 1.08001 * 120.66780 * 180.02562 * 13 12 11 36 36 H 1.08002 * 120.43814 * 180.02562 * 14 13 12 37 37 H 0.96994 * 119.99641 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1453 1.1366 0.0000 4 6 3.4816 1.2011 0.0005 5 6 4.2253 0.0668 0.0005 6 6 5.7308 0.1342 0.0005 7 7 6.2308 -0.0842 -1.3634 8 6 3.5561 -1.1854 0.0005 9 7 4.2320 -2.3126 0.0011 10 7 2.1729 -1.1858 0.0005 11 6 1.4685 -2.3895 0.0001 12 6 1.7623 -3.3601 0.9598 13 6 1.0606 -4.5563 0.9584 14 6 0.0835 -4.7512 -0.0012 15 6 -0.1654 -3.7351 -0.9405 16 6 -1.1610 -3.9192 -1.9269 17 1 -1.7274 -4.8382 -1.9575 18 6 -1.4130 -2.9099 -2.8642 19 7 -0.7270 -1.7975 -2.8274 20 14 -2.7282 -3.1535 -4.1681 21 1 -4.0312 -2.6591 -3.6554 22 1 -2.3584 -2.3972 -5.3914 23 1 -2.8405 -4.5979 -4.4943 24 7 0.5295 -2.5940 -0.9034 25 1 -0.3633 -0.0964 -1.0232 26 1 -0.3633 -0.8379 0.5950 27 1 -0.3632 0.9342 0.4281 28 1 3.9719 2.1633 0.0001 29 1 6.0505 1.1152 0.3520 30 1 6.1289 -0.6360 0.6611 31 1 5.8252 0.5782 -2.0076 32 1 7.2386 -0.0441 -1.3899 33 1 5.2019 -2.2966 0.0018 34 1 2.5303 -3.1808 1.6976 35 1 1.2721 -5.3200 1.6922 36 1 -0.4807 -5.6718 -0.0285 37 1 -0.9013 -1.0985 -3.4769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167673828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:08 Heat of formation + Delta-G solvation = 94.275645 kcal Electronic energy + Delta-G solvation = -22472.505378 eV Core-core repulsion = 19249.957454 eV Total energy + Delta-G solvation = -3222.547924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.41774 -39.96283 -37.19518 -36.63549 -35.29109 -34.13881 -32.38413 -31.84835 -31.02587 -29.54027 -27.58216 -25.56543 -25.13557 -23.68827 -22.77177 -22.13436 -19.56291 -19.19420 -18.35515 -17.60641 -17.10804 -16.67296 -16.55289 -16.42625 -15.77590 -15.60910 -15.26848 -14.83181 -14.40345 -14.27534 -13.95034 -13.71851 -13.56331 -13.25793 -13.10256 -12.87251 -12.85379 -12.67084 -12.43273 -12.38613 -11.83819 -11.35684 -11.13857 -11.00135 -10.28327 -10.11061 -9.68713 -9.63506 -9.50021 -8.53852 -8.29721 -6.50956 -0.30183 0.77287 1.01270 1.08192 1.44923 1.45602 1.55146 1.58058 2.24752 2.60102 2.82096 3.13579 3.52823 3.70289 3.77404 3.88809 3.96959 4.25113 4.30596 4.44143 4.56603 4.63878 4.69052 4.71641 4.81184 4.83879 4.89798 5.12002 5.20585 5.22746 5.38470 5.52030 5.70136 5.80040 5.91716 6.15633 6.19728 6.29656 6.59401 6.71969 6.91349 6.96601 7.44494 7.96772 8.42377 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.005823 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.574259 B = 4807.044310 C = 5382.819330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.426 3.574 3 N -0.574 5.574 4 C 0.148 3.852 5 C -0.268 4.268 6 C 0.134 3.866 7 N -0.860 5.860 8 C 0.415 3.585 9 N -0.780 5.780 10 N -0.445 5.445 11 C 0.329 3.671 12 C -0.265 4.265 13 C -0.050 4.050 14 C -0.279 4.279 15 C 0.237 3.763 16 C -0.455 4.455 17 H 0.094 0.906 18 C 0.032 3.968 19 N -0.747 5.747 20 Si 0.983 3.017 21 H -0.259 1.259 22 H -0.275 1.275 23 H -0.260 1.260 24 N -0.501 5.501 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.194 0.806 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.345 0.655 32 H 0.356 0.644 33 H 0.351 0.649 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 7.388 3.468 9.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.165 3.835 3 N -0.297 5.297 4 C 0.008 3.992 5 C -0.279 4.279 6 C 0.003 3.997 7 N -0.393 5.393 8 C 0.142 3.858 9 N -0.413 5.413 10 N -0.144 5.144 11 C 0.097 3.903 12 C -0.291 4.291 13 C -0.075 4.075 14 C -0.301 4.301 15 C 0.111 3.889 16 C -0.486 4.486 17 H 0.112 0.888 18 C -0.191 4.191 19 N -0.369 5.369 20 Si 0.804 3.196 21 H -0.183 1.183 22 H -0.200 1.200 23 H -0.183 1.183 24 N -0.217 5.217 25 H 0.123 0.877 26 H 0.081 0.919 27 H 0.130 0.870 28 H 0.210 0.790 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.158 0.842 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.120 0.880 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.285 7.158 2.810 8.803 hybrid contribution 1.468 -0.055 0.032 1.469 sum 5.753 7.103 2.842 9.572 Atomic orbital electron populations 1.20864 0.84331 1.03559 1.05742 1.23800 0.97037 0.79547 0.83132 1.68213 1.11051 1.22343 1.28123 1.22730 0.88292 0.99319 0.88883 1.21348 0.98611 0.91564 1.16332 1.20227 0.87068 1.01401 0.91028 1.58581 1.12927 1.60593 1.07175 1.18940 0.82553 0.92206 0.92080 1.69623 1.14561 1.26869 1.30207 1.42601 1.04900 1.06017 1.60881 1.18495 0.93260 0.85519 0.92986 1.20938 1.07050 0.97241 1.03881 1.21105 0.93607 0.95602 0.97173 1.22011 1.04997 1.01690 1.01447 1.18730 0.91394 0.86468 0.92293 1.19931 1.15630 1.02904 1.10167 0.88755 1.26846 0.98333 0.94008 0.99865 1.70134 1.32258 1.04359 1.30118 0.85177 0.78055 0.79565 0.76769 1.18342 1.20006 1.18347 1.68199 1.08907 1.24002 1.20626 0.87687 0.91892 0.87030 0.78969 0.90861 0.91258 0.84178 0.82916 0.83076 0.88029 0.84473 0.86068 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.32 8.75 71.24 0.62 -2.70 16 2 C 0.43 17.30 7.56 137.87 1.04 18.34 16 3 N -0.57 -20.25 10.25 -187.06 -1.92 -22.17 16 4 C 0.15 4.35 10.80 83.79 0.90 5.26 16 5 C -0.27 -8.55 5.44 -19.54 -0.11 -8.66 16 6 C 0.13 3.12 6.29 85.55 0.54 3.66 16 7 N -0.86 -19.43 9.61 -190.01 -1.83 -21.26 16 8 C 0.41 17.33 7.32 134.29 0.98 18.31 16 9 N -0.78 -33.90 12.21 -54.46 -0.67 -34.56 16 10 N -0.45 -20.05 2.86 -339.44 -0.97 -21.02 16 11 C 0.33 16.42 5.24 133.17 0.70 17.12 16 12 C -0.27 -12.56 8.78 22.71 0.20 -12.36 16 13 C -0.05 -2.23 10.15 22.40 0.23 -2.00 16 14 C -0.28 -13.20 9.83 22.87 0.22 -12.98 16 15 C 0.24 12.56 6.55 40.21 0.26 12.83 16 16 C -0.46 -23.18 9.14 23.47 0.21 -22.97 16 17 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 18 C 0.03 1.53 5.50 85.29 0.47 2.00 16 19 N -0.75 -37.34 10.44 21.84 0.23 -37.12 16 20 Si 0.98 36.24 29.56 68.60 2.03 38.27 16 21 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 22 H -0.28 -9.97 7.11 99.48 0.71 -9.26 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 N -0.50 -26.66 6.20 -186.24 -1.15 -27.81 16 25 H 0.10 4.50 7.03 -2.39 -0.02 4.48 16 26 H 0.06 2.62 6.95 -2.39 -0.02 2.61 16 27 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 28 H 0.19 3.82 8.03 -2.91 -0.02 3.80 16 29 H 0.07 1.21 8.01 -2.39 -0.02 1.19 16 30 H 0.07 1.69 7.23 -2.39 -0.02 1.67 16 31 H 0.35 7.48 8.99 -89.69 -0.81 6.68 16 32 H 0.36 5.88 9.08 -89.69 -0.81 5.07 16 33 H 0.35 13.61 7.12 -92.71 -0.66 12.95 16 34 H 0.10 4.69 7.64 -2.91 -0.02 4.67 16 35 H 0.14 4.98 8.06 -2.91 -0.02 4.96 16 36 H 0.12 5.16 8.06 -2.91 -0.02 5.14 16 37 H 0.28 12.74 8.29 -92.71 -0.77 11.97 16 Total: -1.00 -64.01 314.24 0.87 -63.14 By element: Atomic # 1 Polarization: 47.82 SS G_CDS: -1.13 Total: 46.69 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 6.28 Total: 15.83 kcal Atomic # 7 Polarization: -157.63 SS G_CDS: -6.31 Total: -163.93 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Total: -64.01 0.87 -63.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167673828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.420 kcal (2) G-P(sol) polarization free energy of solvation -64.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds