Wall clock time and date at job start Tue Mar 31 2020 02:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30713 * 1 3 3 Si 1.86803 * 120.00458 * 2 1 4 4 H 1.48497 * 109.46962 * 269.99645 * 3 2 1 5 5 H 1.48493 * 109.46832 * 29.99860 * 3 2 1 6 6 H 1.48506 * 109.46884 * 149.99832 * 3 2 1 7 7 C 1.40128 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.40954 * 119.99935 * 0.02562 * 7 2 1 10 10 N 1.33933 * 120.26432 * 0.21306 * 9 7 2 11 11 C 1.31678 * 119.87365 * 180.25468 * 10 9 7 12 12 C 1.39010 * 120.42446 * 359.78439 * 11 10 9 13 13 N 1.32209 * 120.53216 * 359.97010 * 12 11 10 14 14 C 1.32452 * 120.11469 * 0.02562 * 13 12 11 15 15 N 1.39041 * 120.21124 * 179.97438 * 14 13 12 16 16 C 1.36254 * 126.07707 * 335.00701 * 15 14 13 17 17 C 1.34485 * 107.47654 * 179.97438 * 16 15 14 18 18 C 1.40683 * 108.09744 * 0.03044 * 17 16 15 19 19 N 1.30127 * 108.38766 * 359.92232 * 18 17 16 20 20 C 1.50985 * 123.43260 * 179.82428 * 18 17 16 21 21 C 1.53371 * 108.19916 * 343.33769 * 20 18 17 22 22 C 1.53021 * 109.76078 * 50.71166 * 21 20 18 23 23 H 1.09004 * 109.38569 * 48.25190 * 22 21 20 24 24 N 1.46898 * 109.42983 * 168.12776 * 22 21 20 25 25 C 1.50896 * 128.27171 * 180.14630 * 17 16 15 26 26 H 0.96999 * 119.99363 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.78585 * 179.76023 * 11 10 9 28 28 H 1.07993 * 119.73346 * 179.97438 * 12 11 10 29 29 H 1.08000 * 126.25810 * 0.23930 * 16 15 14 30 30 H 1.08998 * 109.71914 * 223.66664 * 20 18 17 31 31 H 1.09001 * 109.75644 * 103.03090 * 20 18 17 32 32 H 1.08997 * 109.42695 * 290.61754 * 21 20 18 33 33 H 1.09007 * 109.41892 * 170.79809 * 21 20 18 34 34 H 1.00900 * 110.99592 * 180.25187 * 24 22 21 35 35 H 1.00901 * 111.00173 * 304.20942 * 24 22 21 36 36 H 1.08999 * 109.72315 * 282.98001 * 25 17 16 37 37 H 1.09006 * 109.71897 * 43.63728 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0463 -1.4001 5 1 1.4388 2.6526 0.7000 6 1 3.5388 1.4400 0.7001 7 6 2.0077 -1.2136 0.0005 8 1 3.0877 -1.2137 0.0001 9 6 1.3028 -2.4342 0.0005 10 7 -0.0365 -2.4403 -0.0043 11 6 -0.6872 -3.5851 0.0008 12 6 0.0070 -4.7894 0.0067 13 7 1.3291 -4.8026 0.0066 14 6 2.0050 -3.6635 0.0015 15 7 3.3954 -3.6750 0.0019 16 6 4.1893 -4.6776 0.4722 17 6 5.4671 -4.3005 0.2890 18 6 5.4655 -3.0280 -0.3110 19 7 4.2302 -2.6568 -0.4828 20 6 6.7246 -2.2747 -0.6673 21 6 7.8947 -2.9105 0.0936 22 6 7.8933 -4.4248 -0.1268 23 1 7.7865 -4.6354 -1.1910 24 7 9.1590 -4.9904 0.3588 25 6 6.7245 -5.0581 0.6384 26 1 -0.4849 0.8401 -0.0004 27 1 -1.7672 -3.5883 0.0009 28 1 -0.5379 -5.7217 0.0113 29 1 3.8537 -5.6070 0.9080 30 1 6.6221 -1.2291 -0.3770 31 1 6.9035 -2.3427 -1.7404 32 1 7.7927 -2.6990 1.1579 33 1 8.8334 -2.4922 -0.2699 34 1 9.1850 -5.9896 0.2209 35 1 9.9481 -4.5436 -0.0837 36 1 6.9079 -4.9916 1.7108 37 1 6.6172 -6.1030 0.3470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168808383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:00 Heat of formation + Delta-G solvation = 124.744574 kcal Electronic energy + Delta-G solvation = -22068.088768 eV Core-core repulsion = 18846.862076 eV Total energy + Delta-G solvation = -3221.226692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93975 -39.00326 -37.08047 -34.29046 -33.32055 -32.07613 -31.42453 -30.63100 -28.87691 -26.82261 -26.15152 -24.26659 -22.44132 -21.75231 -20.85243 -20.13044 -18.42389 -17.73421 -17.01395 -16.19609 -15.48764 -15.32655 -14.94628 -14.79839 -14.41953 -14.31307 -13.57899 -13.23136 -12.98992 -12.88851 -12.42826 -12.29729 -12.09040 -11.78923 -11.67962 -11.49439 -11.41994 -10.98744 -10.95233 -10.54536 -10.30050 -10.07306 -9.78054 -9.48670 -9.30575 -8.82760 -8.73954 -8.17729 -7.73140 -7.30093 -6.71739 -4.73999 1.96050 2.56167 2.96929 3.01674 3.05453 3.13410 3.27156 3.31192 3.77648 4.39278 4.50339 4.77548 5.02802 5.26320 5.29431 5.47748 5.53765 5.61942 5.67909 5.74000 5.85183 5.90970 5.98120 6.07501 6.09145 6.18679 6.24939 6.40946 6.50189 6.53769 6.63713 6.81994 6.93459 7.10548 7.31492 7.37700 7.43190 7.85870 8.12489 8.34200 8.44594 8.58174 9.01328 9.62210 9.93857 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.005957 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.610699 B = 4699.336406 C = 6287.997163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.057 3.943 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.373 4.373 8 H 0.129 0.871 9 C 0.209 3.791 10 N -0.443 5.443 11 C 0.087 3.913 12 C -0.107 4.107 13 N -0.433 5.433 14 C 0.156 3.844 15 N -0.265 5.265 16 C 0.068 3.932 17 C -0.253 4.253 18 C 0.049 3.951 19 N -0.253 5.253 20 C -0.031 4.031 21 C -0.105 4.105 22 C 0.094 3.906 23 H 0.036 0.964 24 N -0.849 5.849 25 C -0.022 4.022 26 H 0.280 0.720 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.165 0.835 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.339 0.661 35 H 0.338 0.662 36 H 0.072 0.928 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.198 -3.505 -0.205 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.316 5.316 2 C -0.171 4.171 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.402 4.402 8 H 0.146 0.854 9 C 0.083 3.917 10 N -0.160 5.160 11 C -0.086 4.086 12 C -0.269 4.269 13 N -0.149 5.149 14 C -0.082 4.082 15 N -0.040 5.040 16 C -0.077 4.077 17 C -0.266 4.266 18 C -0.118 4.118 19 N -0.074 5.074 20 C -0.071 4.071 21 C -0.143 4.143 22 C -0.017 4.017 23 H 0.054 0.946 24 N -0.378 5.378 25 C -0.061 4.061 26 H 0.092 0.908 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.183 0.817 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.090 0.910 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.849 -2.126 0.081 10.076 hybrid contribution 0.590 -0.540 -0.709 1.069 sum 10.439 -2.667 -0.629 10.793 Atomic orbital electron populations 1.70108 1.07674 1.28990 1.24837 1.26400 0.95025 1.02145 0.93569 0.86126 0.80666 0.79360 0.79815 1.18799 1.19841 1.17846 1.20719 0.97274 0.88403 1.33803 0.85373 1.18928 0.88720 0.91351 0.92658 1.69692 1.06253 1.24792 1.15270 1.23539 1.00315 0.90162 0.94570 1.22322 0.88443 0.98194 1.17912 1.66843 1.09713 1.29012 1.09306 1.18364 0.79880 0.91752 1.18175 1.45075 1.03173 1.12422 1.43303 1.22074 0.89880 0.95069 1.00706 1.19712 0.93911 0.98182 1.14770 1.22346 0.93653 0.94922 1.00911 1.77206 0.99507 1.10449 1.20277 1.19987 0.88440 0.98519 1.00121 1.21531 0.97187 0.94030 1.01597 1.21343 0.89239 0.94734 0.96371 0.94594 1.58728 1.03932 1.08904 1.66281 1.19807 0.89406 0.96976 0.99938 0.90848 0.84570 0.84734 0.81722 0.89989 0.90496 0.90859 0.91676 0.84860 0.84950 0.90961 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.78 11.48 55.56 0.64 -17.14 16 2 C 0.06 1.41 5.50 -17.32 -0.10 1.32 16 3 Si 0.92 18.39 29.56 -169.99 -5.03 13.36 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 6 H -0.25 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.37 -10.00 8.64 -37.85 -0.33 -10.32 16 8 H 0.13 3.38 4.77 -52.49 -0.25 3.13 16 9 C 0.21 5.77 6.56 -84.65 -0.56 5.22 16 10 N -0.44 -11.96 8.04 -10.82 -0.09 -12.05 16 11 C 0.09 2.01 11.22 -17.33 -0.19 1.81 16 12 C -0.11 -2.41 11.22 -17.10 -0.19 -2.60 16 13 N -0.43 -10.69 10.15 -11.50 -0.12 -10.81 16 14 C 0.16 4.08 7.45 -154.00 -1.15 2.93 16 15 N -0.27 -6.37 3.69 -11.69 -0.04 -6.41 16 16 C 0.07 1.39 11.17 -16.91 -0.19 1.20 16 17 C -0.25 -4.55 5.89 -104.93 -0.62 -5.17 16 18 C 0.05 0.93 7.10 -82.25 -0.58 0.35 16 19 N -0.25 -5.85 9.10 33.80 0.31 -5.54 16 20 C -0.03 -0.44 6.31 -27.55 -0.17 -0.62 16 21 C -0.10 -1.26 5.42 -26.53 -0.14 -1.40 16 22 C 0.09 1.11 3.19 -67.50 -0.22 0.90 16 23 H 0.04 0.44 8.10 -51.93 -0.42 0.02 16 24 N -0.85 -8.08 9.25 -4.49 -0.04 -8.12 16 25 C -0.02 -0.31 5.86 -27.59 -0.16 -0.47 16 26 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 27 H 0.14 2.64 8.06 -52.48 -0.42 2.22 16 28 H 0.14 2.52 8.06 -52.49 -0.42 2.10 16 29 H 0.17 3.04 8.06 -52.49 -0.42 2.62 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.06 0.63 8.07 -51.92 -0.42 0.21 16 34 H 0.34 2.76 9.04 -39.29 -0.36 2.41 16 35 H 0.34 2.62 8.93 -39.29 -0.35 2.27 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -30.84 310.14 -8.60 -39.44 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.31 Total: 9.45 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -4.60 Total: -6.86 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.66 Total: -60.07 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.84 -8.60 -39.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168808383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.186 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds