Wall clock time and date at job start Tue Mar 31 2020 02:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30713 * 1 3 3 Si 1.86803 * 120.00458 * 2 1 4 4 H 1.48497 * 109.46962 * 269.99645 * 3 2 1 5 5 H 1.48493 * 109.46832 * 29.99860 * 3 2 1 6 6 H 1.48506 * 109.46884 * 149.99832 * 3 2 1 7 7 C 1.40128 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.40954 * 119.99935 * 0.02562 * 7 2 1 10 10 N 1.33933 * 120.26432 * 0.21306 * 9 7 2 11 11 C 1.31678 * 119.87365 * 180.25468 * 10 9 7 12 12 C 1.39010 * 120.42446 * 359.78439 * 11 10 9 13 13 N 1.32209 * 120.53216 * 359.97010 * 12 11 10 14 14 C 1.32452 * 120.11469 * 0.02562 * 13 12 11 15 15 N 1.39041 * 120.21124 * 179.97438 * 14 13 12 16 16 C 1.36254 * 126.07707 * 335.00701 * 15 14 13 17 17 C 1.34485 * 107.47654 * 179.97438 * 16 15 14 18 18 C 1.40683 * 108.09744 * 0.03044 * 17 16 15 19 19 N 1.30127 * 108.38766 * 359.92232 * 18 17 16 20 20 C 1.50985 * 123.43260 * 179.82428 * 18 17 16 21 21 C 1.53371 * 108.19916 * 343.33769 * 20 18 17 22 22 C 1.53021 * 109.76078 * 50.71166 * 21 20 18 23 23 H 1.09004 * 109.38569 * 48.25190 * 22 21 20 24 24 N 1.46898 * 109.42983 * 168.12776 * 22 21 20 25 25 C 1.50896 * 128.27171 * 180.14630 * 17 16 15 26 26 H 0.96999 * 119.99363 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.78585 * 179.76023 * 11 10 9 28 28 H 1.07993 * 119.73346 * 179.97438 * 12 11 10 29 29 H 1.08000 * 126.25810 * 0.23930 * 16 15 14 30 30 H 1.08998 * 109.71914 * 223.66664 * 20 18 17 31 31 H 1.09001 * 109.75644 * 103.03090 * 20 18 17 32 32 H 1.08997 * 109.42695 * 290.61754 * 21 20 18 33 33 H 1.09007 * 109.41892 * 170.79809 * 21 20 18 34 34 H 1.00900 * 110.99592 * 180.25187 * 24 22 21 35 35 H 1.00901 * 111.00173 * 304.20942 * 24 22 21 36 36 H 1.08999 * 109.72315 * 282.98001 * 25 17 16 37 37 H 1.09006 * 109.71897 * 43.63728 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0463 -1.4001 5 1 1.4388 2.6526 0.7000 6 1 3.5388 1.4400 0.7001 7 6 2.0077 -1.2136 0.0005 8 1 3.0877 -1.2137 0.0001 9 6 1.3028 -2.4342 0.0005 10 7 -0.0365 -2.4403 -0.0043 11 6 -0.6872 -3.5851 0.0008 12 6 0.0070 -4.7894 0.0067 13 7 1.3291 -4.8026 0.0066 14 6 2.0050 -3.6635 0.0015 15 7 3.3954 -3.6750 0.0019 16 6 4.1893 -4.6776 0.4722 17 6 5.4671 -4.3005 0.2890 18 6 5.4655 -3.0280 -0.3110 19 7 4.2302 -2.6568 -0.4828 20 6 6.7246 -2.2747 -0.6673 21 6 7.8947 -2.9105 0.0936 22 6 7.8933 -4.4248 -0.1268 23 1 7.7865 -4.6354 -1.1910 24 7 9.1590 -4.9904 0.3588 25 6 6.7245 -5.0581 0.6384 26 1 -0.4849 0.8401 -0.0004 27 1 -1.7672 -3.5883 0.0009 28 1 -0.5379 -5.7217 0.0113 29 1 3.8537 -5.6070 0.9080 30 1 6.6221 -1.2291 -0.3770 31 1 6.9035 -2.3427 -1.7404 32 1 7.7927 -2.6990 1.1579 33 1 8.8334 -2.4922 -0.2699 34 1 9.1850 -5.9896 0.2209 35 1 9.9481 -4.5436 -0.0837 36 1 6.9079 -4.9916 1.7108 37 1 6.6172 -6.1030 0.3470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168808383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:59 Heat of formation + Delta-G solvation = 103.922837 kcal Electronic energy + Delta-G solvation = -22068.991666 eV Core-core repulsion = 18846.862076 eV Total energy + Delta-G solvation = -3222.129590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.50151 -40.80667 -38.20705 -36.14055 -34.83318 -33.68020 -32.91762 -31.99904 -30.48998 -28.11906 -27.97548 -25.63371 -24.23755 -23.34006 -22.04515 -21.68923 -19.84449 -19.55768 -18.64828 -17.91217 -16.94333 -16.38324 -16.29079 -16.12237 -16.01375 -15.91733 -14.87897 -14.83998 -14.46656 -14.24662 -14.08783 -13.64554 -13.53583 -13.32938 -13.10792 -12.98503 -12.72256 -12.52063 -12.09787 -12.01737 -11.84837 -11.68091 -11.53185 -11.21100 -10.89551 -10.54782 -9.84754 -9.59730 -9.49815 -8.99534 -8.54454 -6.65138 0.18802 0.75574 1.32256 1.40990 1.45738 1.48798 1.59742 1.84979 2.12731 2.65985 3.38227 3.63479 3.69979 3.85296 3.99433 4.07810 4.10962 4.12115 4.31412 4.39778 4.52880 4.65768 4.66878 4.76488 4.80751 4.87103 4.94989 5.07376 5.08490 5.12466 5.29762 5.35875 5.44798 5.65866 5.82609 6.09677 6.24905 6.34938 6.49452 6.72691 6.75429 6.80125 7.19090 7.73982 8.15597 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.005957 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.610699 B = 4699.336406 C = 6287.997163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.016 3.984 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.407 4.407 8 H 0.126 0.874 9 C 0.178 3.822 10 N -0.476 5.476 11 C 0.076 3.924 12 C -0.100 4.100 13 N -0.445 5.445 14 C 0.136 3.864 15 N -0.292 5.292 16 C 0.047 3.953 17 C -0.239 4.239 18 C 0.051 3.949 19 N -0.299 5.299 20 C -0.032 4.032 21 C -0.099 4.099 22 C 0.100 3.900 23 H 0.036 0.964 24 N -0.848 5.848 25 C -0.020 4.020 26 H 0.289 0.711 27 H 0.173 0.827 28 H 0.177 0.823 29 H 0.176 0.824 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.349 0.651 35 H 0.352 0.648 36 H 0.074 0.926 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.353 -3.747 -0.264 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.208 4.208 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.181 1.181 6 H -0.180 1.180 7 C -0.437 4.437 8 H 0.143 0.857 9 C 0.053 3.947 10 N -0.193 5.193 11 C -0.095 4.095 12 C -0.262 4.262 13 N -0.161 5.161 14 C -0.100 4.100 15 N -0.067 5.067 16 C -0.096 4.096 17 C -0.251 4.251 18 C -0.117 4.117 19 N -0.120 5.120 20 C -0.072 4.072 21 C -0.137 4.137 22 C -0.011 4.011 23 H 0.054 0.946 24 N -0.379 5.379 25 C -0.059 4.059 26 H 0.100 0.900 27 H 0.190 0.810 28 H 0.194 0.806 29 H 0.193 0.807 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.093 0.907 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.021 -2.407 0.025 12.260 hybrid contribution -0.057 -0.651 -0.689 0.950 sum 11.964 -3.057 -0.665 12.366 Atomic orbital electron populations 1.70150 1.09006 1.30390 1.25557 1.27269 0.95856 1.05065 0.92643 0.85106 0.79156 0.74958 0.80100 1.18083 1.18135 1.17998 1.20957 0.97482 0.89448 1.35790 0.85707 1.19326 0.89458 0.92480 0.93469 1.69632 1.06462 1.26764 1.16487 1.24160 1.02044 0.89659 0.93654 1.23043 0.88125 0.99709 1.15308 1.66977 1.10617 1.28524 1.10007 1.18545 0.81312 0.91784 1.18383 1.45082 1.02673 1.13659 1.45331 1.22510 0.90657 0.95176 1.01274 1.20213 0.94548 0.97830 1.12527 1.23250 0.93879 0.95540 0.99006 1.77122 1.01064 1.11560 1.22215 1.20242 0.86995 0.98366 1.01560 1.21507 0.97335 0.94180 1.00664 1.21179 0.89479 0.94472 0.95972 0.94558 1.58633 1.03288 1.09744 1.66272 1.19914 0.88196 0.97396 1.00411 0.89969 0.80994 0.80622 0.80686 0.89674 0.88814 0.91863 0.88514 0.83764 0.83403 0.90714 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.34 11.48 21.86 0.25 -38.09 16 2 C 0.02 0.83 5.50 85.32 0.47 1.30 16 3 Si 0.99 38.30 29.56 68.60 2.03 40.32 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.41 -22.82 8.64 23.39 0.20 -22.62 16 8 H 0.13 6.92 4.77 -2.91 -0.01 6.90 16 9 C 0.18 10.27 6.56 40.31 0.26 10.54 16 10 N -0.48 -26.46 8.04 -188.13 -1.51 -27.97 16 11 C 0.08 3.53 11.22 84.90 0.95 4.49 16 12 C -0.10 -4.46 11.22 84.82 0.95 -3.51 16 13 N -0.45 -22.28 10.15 -190.29 -1.93 -24.22 16 14 C 0.14 7.40 7.45 133.64 1.00 8.40 16 15 N -0.29 -14.51 3.69 -190.91 -0.70 -15.21 16 16 C 0.05 1.95 11.17 83.15 0.93 2.87 16 17 C -0.24 -8.45 5.89 -20.06 -0.12 -8.57 16 18 C 0.05 1.94 7.10 43.50 0.31 2.25 16 19 N -0.30 -14.23 9.10 -46.98 -0.43 -14.65 16 20 C -0.03 -0.86 6.31 30.06 0.19 -0.67 16 21 C -0.10 -2.05 5.42 30.73 0.17 -1.89 16 22 C 0.10 2.05 3.19 45.05 0.14 2.20 16 23 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 24 N -0.85 -13.03 9.25 -168.11 -1.55 -14.59 16 25 C -0.02 -0.52 5.86 30.04 0.18 -0.34 16 26 H 0.29 13.44 8.29 -92.71 -0.77 12.67 16 27 H 0.17 6.47 8.06 -2.91 -0.02 6.44 16 28 H 0.18 6.16 8.06 -2.91 -0.02 6.14 16 29 H 0.18 6.58 8.06 -2.91 -0.02 6.56 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 33 H 0.10 1.46 8.07 -2.38 -0.02 1.44 16 34 H 0.35 4.44 9.04 -89.69 -0.81 3.63 16 35 H 0.35 4.02 8.93 -89.69 -0.80 3.22 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -70.48 310.14 1.30 -69.18 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.48 Total: 30.76 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 5.63 Total: -5.55 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -5.88 Total: -134.72 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.32 kcal Total: -70.48 1.30 -69.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168808383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.106 kcal (2) G-P(sol) polarization free energy of solvation -70.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds