Wall clock time and date at job start Tue Mar 31 2020 03:07:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09005 * 109.47046 * 2 1
4 4 C 1.52999 * 109.46990 * 240.00304 * 2 1 3
5 5 C 1.50699 * 109.47251 * 64.99623 * 4 2 1
6 6 N 1.34781 * 119.99878 * 180.02562 * 5 4 2
7 7 O 1.21276 * 119.99876 * 0.02562 * 5 4 2
8 8 C 1.50700 * 109.47497 * 120.00013 * 2 1 3
9 9 O 1.21281 * 119.99996 * 120.00028 * 8 2 1
10 10 N 1.34770 * 119.99954 * 300.00230 * 8 2 1
11 11 C 1.46500 * 119.99976 * 180.02562 * 10 8 2
12 12 H 1.08999 * 110.88971 * 31.11159 * 11 10 8
13 13 C 1.54916 * 111.00260 * 267.19246 * 11 10 8
14 14 N 1.47424 * 104.83304 * 204.91790 * 13 11 10
15 15 C 1.36933 * 125.64858 * 204.17625 * 14 13 11
16 16 H 1.08002 * 120.00065 * 354.82527 * 15 14 13
17 17 C 1.38815 * 120.00443 * 174.82796 * 15 14 13
18 18 N 1.31623 * 119.99460 * 7.06045 * 17 15 14
19 19 Si 1.86799 * 120.00248 * 187.06364 * 17 15 14
20 20 H 1.48497 * 109.46889 * 94.98707 * 19 17 15
21 21 H 1.48500 * 109.46810 * 214.98407 * 19 17 15
22 22 H 1.48500 * 109.47281 * 334.98554 * 19 17 15
23 23 C 1.47023 * 108.70286 * 24.12456 * 14 13 11
24 24 C 1.54318 * 107.27278 * 358.94527 * 23 14 13
25 25 H 1.09004 * 110.87348 * 219.37078 * 24 23 14
26 26 O 1.42897 * 110.72323 * 96.16839 * 24 23 14
27 27 H 1.09002 * 109.47436 * 59.99823 * 1 2 3
28 28 H 1.09003 * 109.47229 * 180.02562 * 1 2 3
29 29 H 1.09007 * 109.47070 * 299.99495 * 1 2 3
30 30 H 1.09001 * 109.47112 * 304.99554 * 4 2 1
31 31 H 1.09000 * 109.47527 * 185.00142 * 4 2 1
32 32 H 0.97006 * 119.99789 * 180.02562 * 6 5 4
33 33 H 0.96996 * 120.00007 * 359.71883 * 6 5 4
34 34 H 0.97002 * 120.00556 * 359.97438 * 10 8 2
35 35 H 1.09000 * 110.36655 * 323.75314 * 13 11 10
36 36 H 1.08997 * 110.36711 * 86.07409 * 13 11 10
37 37 H 0.96997 * 119.99322 * 180.02562 * 18 17 15
38 38 H 1.08996 * 109.88406 * 239.52476 * 23 14 13
39 39 H 1.09003 * 109.87852 * 118.36037 * 23 14 13
40 40 H 0.96699 * 114.00430 * 66.47303 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0399 -0.7212 -1.2493
5 6 1.6412 0.0571 -2.4766
6 7 1.9843 -0.3919 -3.7002
7 8 1.0115 1.0874 -2.3632
8 6 2.0324 -0.7104 1.2304
9 8 2.7297 -1.6964 1.1191
10 7 1.7068 -0.2500 2.4545
11 6 2.1957 -0.9402 3.6506
12 1 3.1661 -1.4005 3.4645
13 6 1.1685 -1.9892 4.1452
14 7 1.4505 -2.1444 5.5839
15 6 1.1511 -3.2449 6.3416
16 1 0.5923 -4.0621 5.9098
17 6 1.5656 -3.3104 7.6648
18 7 2.1231 -2.2617 8.2323
19 14 1.3323 -4.8865 8.6398
20 1 2.5770 -5.6942 8.5802
21 1 1.0261 -4.5528 10.0541
22 1 0.2085 -5.6653 8.0604
23 6 2.1075 -0.9222 6.0700
24 6 2.2619 0.0263 4.8626
25 1 3.2222 0.5410 4.8934
26 8 1.1873 0.9672 4.8181
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8901
30 1 1.6053 -1.7198 -1.2952
31 1 3.1262 -0.7995 -1.2057
32 1 1.7279 0.1093 -4.4902
33 1 2.4914 -1.2138 -3.7907
34 1 1.1494 0.5389 2.5436
35 1 0.1522 -1.6250 3.9949
36 1 1.3136 -2.9364 3.6258
37 1 2.4131 -2.3076 9.1568
38 1 3.0884 -1.1659 6.4779
39 1 1.4921 -0.4502 6.8359
40 1 1.1831 1.5945 5.5540
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001220135180.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:30
Heat of formation + Delta-G solvation = -105.141847 kcal
Electronic energy + Delta-G solvation = -23056.431288 eV
Core-core repulsion = 19485.634301 eV
Total energy + Delta-G solvation = -3570.796986 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.30205 -39.32618 -37.90956 -34.83841 -34.22543 -33.95313 -33.85726 -31.59835
-28.64422 -27.91974 -26.99186 -24.71319 -23.68159 -21.05551 -20.47076 -20.06335
-19.56783 -17.80436 -17.48952 -17.12274 -16.73604 -16.06128 -15.68839 -15.33756
-14.87425 -14.72489 -14.16720 -13.97065 -13.69795 -13.23433 -13.15404 -12.80425
-12.66968 -12.51168 -12.16027 -12.03420 -11.33122 -11.30206 -11.17413 -10.93565
-10.85779 -10.50778 -10.45298 -10.14602 -10.11348 -9.96051 -9.82862 -9.52228
-9.28257 -8.66471 -8.60719 -6.86959 -5.76123 -3.07765 2.40178 2.83741
3.10551 3.40154 3.45529 3.47194 3.58826 4.43476 4.49604 4.58447
4.80494 4.85722 5.04610 5.31096 5.32167 5.39798 5.50786 5.53549
5.56236 5.73523 5.82752 5.89662 5.97518 6.09356 6.21069 6.23922
6.49842 6.63367 6.67123 6.95517 7.02397 7.33957 7.44603 7.73048
7.84839 7.99972 8.08769 8.19984 8.48539 9.17666 9.78113 10.43224
11.36544
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.032666 B = 0.003422 C = 0.003240
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 856.954709 B = 8179.668527 C = 8640.313790
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.093 4.093
3 H 0.103 0.897
4 C -0.125 4.125
5 C 0.519 3.481
6 N -0.858 5.858
7 O -0.542 6.542
8 C 0.514 3.486
9 O -0.549 6.549
10 N -0.705 5.705
11 C 0.137 3.863
12 H 0.105 0.895
13 C 0.132 3.868
14 N -0.601 5.601
15 C -0.225 4.225
16 H 0.080 0.920
17 C -0.009 4.009
18 N -0.924 5.924
19 Si 0.913 3.087
20 H -0.288 1.288
21 H -0.291 1.291
22 H -0.280 1.280
23 C 0.153 3.847
24 C 0.068 3.932
25 H 0.060 0.940
26 O -0.568 6.568
27 H 0.083 0.917
28 H 0.056 0.944
29 H 0.062 0.938
30 H 0.102 0.898
31 H 0.103 0.897
32 H 0.400 0.600
33 H 0.403 0.597
34 H 0.408 0.592
35 H 0.025 0.975
36 H 0.044 0.956
37 H 0.252 0.748
38 H 0.057 0.943
39 H 0.051 0.949
40 H 0.379 0.621
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.707 6.824 -18.733 19.950
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.115 4.115
3 H 0.121 0.879
4 C -0.165 4.165
5 C 0.304 3.696
6 N -0.422 5.422
7 O -0.419 6.419
8 C 0.299 3.701
9 O -0.427 6.427
10 N -0.355 5.355
11 C 0.032 3.968
12 H 0.122 0.878
13 C 0.005 3.995
14 N -0.328 5.328
15 C -0.353 4.353
16 H 0.097 0.903
17 C -0.204 4.204
18 N -0.572 5.572
19 Si 0.743 3.257
20 H -0.216 1.216
21 H -0.218 1.218
22 H -0.206 1.206
23 C 0.028 3.972
24 C 0.008 3.992
25 H 0.078 0.922
26 O -0.374 6.374
27 H 0.101 0.899
28 H 0.075 0.925
29 H 0.081 0.919
30 H 0.121 0.879
31 H 0.122 0.878
32 H 0.230 0.770
33 H 0.231 0.769
34 H 0.244 0.756
35 H 0.043 0.957
36 H 0.062 0.938
37 H 0.063 0.937
38 H 0.075 0.925
39 H 0.069 0.931
40 H 0.227 0.773
Dipole moment (debyes) X Y Z Total
from point charges 0.680 6.347 -18.833 19.885
hybrid contribution 0.006 -0.386 0.838 0.923
sum 0.687 5.961 -17.995 18.969
Atomic orbital electron populations
1.21913 0.92322 1.02576 1.03953 1.20979 0.98360 1.00777 0.91373
0.87888 1.21465 1.03961 1.00176 0.90891 1.20750 0.78208 0.85292
0.85308 1.43904 1.60207 1.29787 1.08291 1.90716 1.39741 1.24659
1.86758 1.20558 0.80106 0.84561 0.84829 1.90691 1.38628 1.26457
1.86917 1.45761 1.52995 1.31886 1.04885 1.22356 0.99447 0.93019
0.82024 0.87761 1.21830 0.95354 0.95973 0.86378 1.44282 1.70291
1.15220 1.02970 1.19095 1.29222 0.94330 0.92679 0.90262 1.24814
1.00842 0.97878 0.96910 1.69933 1.46881 1.27725 1.12680 0.86073
0.77709 0.82632 0.79240 1.21558 1.21780 1.20589 1.21866 0.98593
0.85690 0.91048 1.23511 0.88648 0.89993 0.97083 0.92197 1.86247
1.51671 1.47652 1.51800 0.89860 0.92504 0.91865 0.87943 0.87848
0.76995 0.76913 0.75648 0.95683 0.93815 0.93728 0.92534 0.93101
0.77301
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.68 8.83 37.15 0.33 -1.35 16
2 C -0.09 -1.08 2.37 -91.77 -0.22 -1.29 16
3 H 0.10 1.14 7.95 -51.93 -0.41 0.73 16
4 C -0.12 -1.21 4.52 -27.88 -0.13 -1.34 16
5 C 0.52 4.95 7.82 -10.98 -0.09 4.87 16
6 N -0.86 -4.90 8.87 31.22 0.28 -4.63 16
7 O -0.54 -7.06 14.80 5.56 0.08 -6.98 16
8 C 0.51 7.69 7.15 -10.99 -0.08 7.61 16
9 O -0.55 -9.96 15.56 5.56 0.09 -9.87 16
10 N -0.70 -10.84 5.06 -51.73 -0.26 -11.10 16
11 C 0.14 2.56 3.31 -65.78 -0.22 2.34 16
12 H 0.10 2.07 7.54 -51.93 -0.39 1.68 16
13 C 0.13 2.91 6.92 -2.53 -0.02 2.89 16
14 N -0.60 -15.53 3.39 -170.07 -0.58 -16.11 16
15 C -0.23 -6.36 10.27 -15.06 -0.15 -6.51 16
16 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16
17 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16
18 N -0.92 -26.80 10.36 55.49 0.57 -26.23 16
19 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 16
20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
23 C 0.15 3.61 5.15 -3.07 -0.02 3.59 16
24 C 0.07 1.22 4.20 -24.90 -0.10 1.12 16
25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
26 O -0.57 -9.09 12.14 -35.23 -0.43 -9.51 16
27 H 0.08 0.96 5.95 -51.93 -0.31 0.66 16
28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
29 H 0.06 0.69 7.57 -51.92 -0.39 0.29 16
30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16
31 H 0.10 0.96 7.95 -51.93 -0.41 0.54 16
32 H 0.40 1.88 8.93 -40.82 -0.36 1.52 16
33 H 0.40 1.26 8.83 -40.82 -0.36 0.90 16
34 H 0.41 5.70 7.01 -40.82 -0.29 5.41 16
35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16
36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16
37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16
38 H 0.06 1.46 7.30 -51.93 -0.38 1.08 16
39 H 0.05 1.30 7.54 -51.93 -0.39 0.91 16
40 H 0.38 4.71 9.12 45.56 0.42 5.13 16
LS Contribution 329.63 15.07 4.97 4.97
Total: -1.00 -34.84 329.63 -6.03 -40.88
By element:
Atomic # 1 Polarization: 14.77 SS G_CDS: -4.95 Total: 9.82 kcal
Atomic # 6 Polarization: 12.37 SS G_CDS: -0.79 Total: 11.58 kcal
Atomic # 7 Polarization: -58.08 SS G_CDS: 0.01 Total: -58.06 kcal
Atomic # 8 Polarization: -26.11 SS G_CDS: -0.26 Total: -26.36 kcal
Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -34.84 -6.03 -40.88 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001220135180.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.266 kcal
(2) G-P(sol) polarization free energy of solvation -34.842 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.108 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.142 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds