Wall clock time and date at job start Tue Mar 31 2020 03:07:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09005 * 109.47046 * 2 1
4 4 C 1.52999 * 109.46990 * 240.00304 * 2 1 3
5 5 C 1.50699 * 109.47251 * 64.99623 * 4 2 1
6 6 N 1.34781 * 119.99878 * 180.02562 * 5 4 2
7 7 O 1.21276 * 119.99876 * 0.02562 * 5 4 2
8 8 C 1.50700 * 109.47497 * 120.00013 * 2 1 3
9 9 O 1.21281 * 119.99996 * 120.00028 * 8 2 1
10 10 N 1.34770 * 119.99954 * 300.00230 * 8 2 1
11 11 C 1.46500 * 119.99976 * 180.02562 * 10 8 2
12 12 H 1.08999 * 110.88971 * 31.11159 * 11 10 8
13 13 C 1.54916 * 111.00260 * 267.19246 * 11 10 8
14 14 N 1.47424 * 104.83304 * 204.91790 * 13 11 10
15 15 C 1.36933 * 125.64858 * 204.17625 * 14 13 11
16 16 H 1.08002 * 120.00065 * 354.82527 * 15 14 13
17 17 C 1.38815 * 120.00443 * 174.82796 * 15 14 13
18 18 N 1.31623 * 119.99460 * 7.06045 * 17 15 14
19 19 Si 1.86799 * 120.00248 * 187.06364 * 17 15 14
20 20 H 1.48497 * 109.46889 * 94.98707 * 19 17 15
21 21 H 1.48500 * 109.46810 * 214.98407 * 19 17 15
22 22 H 1.48500 * 109.47281 * 334.98554 * 19 17 15
23 23 C 1.47023 * 108.70286 * 24.12456 * 14 13 11
24 24 C 1.54318 * 107.27278 * 358.94527 * 23 14 13
25 25 H 1.09004 * 110.87348 * 219.37078 * 24 23 14
26 26 O 1.42897 * 110.72323 * 96.16839 * 24 23 14
27 27 H 1.09002 * 109.47436 * 59.99823 * 1 2 3
28 28 H 1.09003 * 109.47229 * 180.02562 * 1 2 3
29 29 H 1.09007 * 109.47070 * 299.99495 * 1 2 3
30 30 H 1.09001 * 109.47112 * 304.99554 * 4 2 1
31 31 H 1.09000 * 109.47527 * 185.00142 * 4 2 1
32 32 H 0.97006 * 119.99789 * 180.02562 * 6 5 4
33 33 H 0.96996 * 120.00007 * 359.71883 * 6 5 4
34 34 H 0.97002 * 120.00556 * 359.97438 * 10 8 2
35 35 H 1.09000 * 110.36655 * 323.75314 * 13 11 10
36 36 H 1.08997 * 110.36711 * 86.07409 * 13 11 10
37 37 H 0.96997 * 119.99322 * 180.02562 * 18 17 15
38 38 H 1.08996 * 109.88406 * 239.52476 * 23 14 13
39 39 H 1.09003 * 109.87852 * 118.36037 * 23 14 13
40 40 H 0.96699 * 114.00430 * 66.47303 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0399 -0.7212 -1.2493
5 6 1.6412 0.0571 -2.4766
6 7 1.9843 -0.3919 -3.7002
7 8 1.0115 1.0874 -2.3632
8 6 2.0324 -0.7104 1.2304
9 8 2.7297 -1.6964 1.1191
10 7 1.7068 -0.2500 2.4545
11 6 2.1957 -0.9402 3.6506
12 1 3.1661 -1.4005 3.4645
13 6 1.1685 -1.9892 4.1452
14 7 1.4505 -2.1444 5.5839
15 6 1.1511 -3.2449 6.3416
16 1 0.5923 -4.0621 5.9098
17 6 1.5656 -3.3104 7.6648
18 7 2.1231 -2.2617 8.2323
19 14 1.3323 -4.8865 8.6398
20 1 2.5770 -5.6942 8.5802
21 1 1.0261 -4.5528 10.0541
22 1 0.2085 -5.6653 8.0604
23 6 2.1075 -0.9222 6.0700
24 6 2.2619 0.0263 4.8626
25 1 3.2222 0.5410 4.8934
26 8 1.1873 0.9672 4.8181
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8901
30 1 1.6053 -1.7198 -1.2952
31 1 3.1262 -0.7995 -1.2057
32 1 1.7279 0.1093 -4.4902
33 1 2.4914 -1.2138 -3.7907
34 1 1.1494 0.5389 2.5436
35 1 0.1522 -1.6250 3.9949
36 1 1.3136 -2.9364 3.6258
37 1 2.4131 -2.3076 9.1568
38 1 3.0884 -1.1659 6.4779
39 1 1.4921 -0.4502 6.8359
40 1 1.1831 1.5945 5.5540
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001220135180.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:30
Heat of formation + Delta-G solvation = -135.962203 kcal
Electronic energy + Delta-G solvation = -23057.767759 eV
Core-core repulsion = 19485.634301 eV
Total energy + Delta-G solvation = -3572.133457 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.38650 -40.39055 -39.38346 -36.45512 -35.44819 -35.13947 -34.59176 -33.49570
-30.33477 -29.07829 -28.48056 -26.51072 -24.89281 -22.41915 -21.95174 -21.44657
-20.67914 -19.21181 -18.62089 -18.24741 -18.01447 -17.04264 -16.91342 -16.64568
-16.58179 -15.86791 -15.78236 -15.27101 -14.92099 -14.71964 -14.49548 -14.16985
-14.16816 -13.85548 -13.61662 -13.18704 -12.94419 -12.80269 -12.75955 -12.28276
-12.18682 -12.09107 -12.07340 -11.90482 -11.88480 -10.99375 -10.88490 -10.75365
-10.73620 -10.52699 -10.04289 -8.94590 -7.90059 -5.24578 1.45351 1.47538
1.56147 1.62315 1.67668 2.04343 2.48175 2.74968 3.20438 3.29981
3.55265 3.65072 3.81851 3.93589 3.98272 4.02884 4.21236 4.27688
4.43126 4.53026 4.66997 4.69651 4.76092 4.83985 4.97939 5.06256
5.09773 5.33789 5.37446 5.44491 5.52154 5.64638 5.96967 6.14400
6.48460 6.61496 6.87809 7.06214 7.26802 7.39447 7.70771 8.34965
9.20411
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.032666 B = 0.003422 C = 0.003240
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 856.954709 B = 8179.668527 C = 8640.313790
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.085 4.085
3 H 0.113 0.887
4 C -0.122 4.122
5 C 0.521 3.479
6 N -0.839 5.839
7 O -0.580 6.580
8 C 0.515 3.485
9 O -0.580 6.580
10 N -0.696 5.696
11 C 0.150 3.850
12 H 0.094 0.906
13 C 0.133 3.867
14 N -0.622 5.622
15 C -0.248 4.248
16 H 0.077 0.923
17 C -0.060 4.060
18 N -0.946 5.946
19 Si 0.979 3.021
20 H -0.286 1.286
21 H -0.291 1.291
22 H -0.271 1.271
23 C 0.159 3.841
24 C 0.091 3.909
25 H 0.090 0.910
26 O -0.565 6.565
27 H 0.082 0.918
28 H 0.053 0.947
29 H 0.065 0.935
30 H 0.107 0.893
31 H 0.110 0.890
32 H 0.408 0.592
33 H 0.417 0.583
34 H 0.417 0.583
35 H 0.024 0.976
36 H 0.030 0.970
37 H 0.250 0.750
38 H 0.026 0.974
39 H 0.024 0.976
40 H 0.398 0.602
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.695 7.226 -20.167 21.434
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.106 4.106
3 H 0.131 0.869
4 C -0.163 4.163
5 C 0.307 3.693
6 N -0.402 5.402
7 O -0.460 6.460
8 C 0.303 3.697
9 O -0.460 6.460
10 N -0.348 5.348
11 C 0.043 3.957
12 H 0.112 0.888
13 C 0.006 3.994
14 N -0.349 5.349
15 C -0.376 4.376
16 H 0.095 0.905
17 C -0.253 4.253
18 N -0.595 5.595
19 Si 0.807 3.193
20 H -0.213 1.213
21 H -0.217 1.217
22 H -0.195 1.195
23 C 0.034 3.966
24 C 0.031 3.969
25 H 0.108 0.892
26 O -0.373 6.373
27 H 0.101 0.899
28 H 0.072 0.928
29 H 0.084 0.916
30 H 0.125 0.875
31 H 0.128 0.872
32 H 0.240 0.760
33 H 0.248 0.752
34 H 0.255 0.745
35 H 0.042 0.958
36 H 0.049 0.951
37 H 0.059 0.941
38 H 0.044 0.956
39 H 0.042 0.958
40 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges 0.665 6.759 -20.323 21.427
hybrid contribution -0.013 -0.525 1.238 1.345
sum 0.652 6.234 -19.085 20.088
Atomic orbital electron populations
1.21868 0.91891 1.02428 1.04062 1.20951 0.98523 1.00917 0.90231
0.86944 1.21441 1.04344 1.00173 0.90306 1.20648 0.77870 0.84701
0.86109 1.43726 1.59043 1.30057 1.07415 1.90706 1.41721 1.26256
1.87331 1.21154 0.79160 0.84027 0.85342 1.90682 1.40018 1.27958
1.87323 1.45639 1.53111 1.31892 1.04110 1.21944 0.97759 0.92398
0.83551 0.88834 1.21879 0.96283 0.96593 0.84654 1.44564 1.70312
1.15493 1.04506 1.19416 1.29500 0.95298 0.93424 0.90488 1.25627
1.00939 1.00891 0.97858 1.70126 1.47502 1.29241 1.12627 0.85060
0.77796 0.78975 0.77503 1.21296 1.21740 1.19531 1.21721 0.96078
0.85959 0.92892 1.23144 0.90545 0.89382 0.93848 0.89221 1.86212
1.50956 1.47423 1.52731 0.89920 0.92760 0.91568 0.87465 0.87208
0.76037 0.75200 0.74484 0.95797 0.95136 0.94117 0.95569 0.95810
0.75133
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.01 8.83 71.98 0.64 -2.37 16
2 C -0.08 -1.80 2.37 -11.54 -0.03 -1.83 16
3 H 0.11 2.25 7.95 -2.38 -0.02 2.23 16
4 C -0.12 -2.15 4.52 29.85 0.13 -2.01 16
5 C 0.52 8.93 7.82 87.66 0.69 9.61 16
6 N -0.84 -7.59 8.87 -173.53 -1.54 -9.13 16
7 O -0.58 -14.21 14.80 -3.02 -0.04 -14.26 16
8 C 0.52 14.68 7.15 87.66 0.63 15.31 16
9 O -0.58 -20.48 15.56 -3.03 -0.05 -20.53 16
10 N -0.70 -20.30 5.06 -435.96 -2.21 -22.50 16
11 C 0.15 5.48 3.31 46.39 0.15 5.64 16
12 H 0.09 3.67 7.54 -2.39 -0.02 3.66 16
13 C 0.13 5.88 6.92 86.86 0.60 6.48 16
14 N -0.62 -32.75 3.39 -691.99 -2.35 -35.10 16
15 C -0.25 -14.25 10.27 84.03 0.86 -13.39 16
16 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16
17 C -0.06 -3.41 5.48 84.86 0.46 -2.95 16
18 N -0.95 -55.97 10.36 21.65 0.22 -55.75 16
19 Si 0.98 46.04 29.56 68.60 2.03 48.07 16
20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16
21 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16
22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16
23 C 0.16 7.59 5.15 86.73 0.45 8.04 16
24 C 0.09 3.18 4.20 31.78 0.13 3.31 16
25 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16
26 O -0.56 -16.86 12.14 -148.98 -1.81 -18.67 16
27 H 0.08 1.79 5.95 -2.39 -0.01 1.78 16
28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16
29 H 0.07 1.31 7.57 -2.38 -0.02 1.30 16
30 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16
31 H 0.11 1.81 7.95 -2.39 -0.02 1.79 16
32 H 0.41 2.89 8.93 -92.70 -0.83 2.06 16
33 H 0.42 1.52 8.83 -92.71 -0.82 0.70 16
34 H 0.42 10.71 7.01 -92.71 -0.65 10.06 16
35 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16
36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16
37 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16
38 H 0.03 1.39 7.30 -2.39 -0.02 1.38 16
39 H 0.02 1.25 7.54 -2.39 -0.02 1.23 16
40 H 0.40 8.94 9.12 -74.06 -0.68 8.27 16
Total: -1.00 -75.82 329.63 -2.89 -78.72
By element:
Atomic # 1 Polarization: 25.19 SS G_CDS: -1.86 Total: 23.33 kcal
Atomic # 6 Polarization: 21.12 SS G_CDS: 4.72 Total: 25.84 kcal
Atomic # 7 Polarization: -116.62 SS G_CDS: -5.87 Total: -122.49 kcal
Atomic # 8 Polarization: -51.56 SS G_CDS: -1.90 Total: -53.46 kcal
Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal
Total: -75.82 -2.89 -78.72 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001220135180.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.247 kcal
(2) G-P(sol) polarization free energy of solvation -75.825 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.071 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.891 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.716 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.962 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds