Wall clock time and date at job start Tue Mar 31 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00339 * 2 1 4 4 H 1.48506 * 109.46755 * 274.14484 * 3 2 1 5 5 H 1.48499 * 109.46761 * 34.13706 * 3 2 1 6 6 H 1.48495 * 109.47270 * 154.14058 * 3 2 1 7 7 C 1.38814 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 170.42013 * 7 2 1 9 9 N 1.36938 * 119.99682 * 350.42533 * 7 2 1 10 10 C 1.47027 * 125.64394 * 169.94059 * 9 7 2 11 11 C 1.54324 * 107.26948 * 178.97296 * 10 9 7 12 12 H 1.09001 * 110.71764 * 96.34819 * 11 10 9 13 13 N 1.46495 * 110.72089 * 219.44549 * 11 10 9 14 14 C 1.34776 * 119.99800 * 273.26733 * 13 11 10 15 15 O 1.21282 * 120.00188 * 0.27785 * 14 13 11 16 16 C 1.50699 * 119.99779 * 180.27513 * 14 13 11 17 17 C 1.53003 * 109.47082 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47385 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47542 * 179.97438 * 18 17 16 20 20 N 1.34772 * 120.00417 * 180.02562 * 19 18 17 21 21 O 1.21285 * 119.99612 * 359.97438 * 19 18 17 22 22 C 1.55157 * 102.94192 * 337.80810 * 11 10 9 23 23 H 1.09002 * 111.00625 * 153.57299 * 22 11 10 24 24 O 1.42898 * 111.00687 * 277.42628 * 22 11 10 25 25 C 1.47420 * 125.64953 * 349.98167 * 9 7 2 26 26 H 0.97006 * 119.99906 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.88160 * 59.56103 * 10 9 7 28 28 H 1.08997 * 110.01003 * 298.46356 * 10 9 7 29 29 H 0.97003 * 120.00061 * 93.55017 * 13 11 10 30 30 H 1.08999 * 109.47607 * 300.00269 * 16 14 13 31 31 H 1.09001 * 109.47207 * 60.00745 * 16 14 13 32 32 H 1.08998 * 109.47286 * 300.00075 * 17 16 14 33 33 H 1.09001 * 109.46735 * 60.00157 * 17 16 14 34 34 H 1.08999 * 109.47501 * 300.00090 * 18 17 16 35 35 H 1.09009 * 109.47092 * 60.00049 * 18 17 16 36 36 H 0.97000 * 119.99570 * 0.02562 * 20 19 18 37 37 H 0.96997 * 120.00195 * 179.97438 * 20 19 18 38 38 H 0.96701 * 114.00319 * 180.02562 * 24 22 11 39 39 H 1.08998 * 110.36869 * 322.92606 * 25 9 7 40 40 H 1.08994 * 110.37247 * 85.14986 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4101 2.0969 -1.3965 5 1 1.4942 2.6258 0.7857 6 1 3.5888 1.4164 0.6106 7 6 2.0102 -1.2022 0.0005 8 1 3.0789 -1.2087 -0.1551 9 7 1.3398 -2.3797 0.1983 10 6 1.9020 -3.7263 0.0187 11 6 0.7932 -4.7375 0.3790 12 1 0.2747 -5.0769 -0.5177 13 7 1.3487 -5.8750 1.1161 14 6 1.8498 -6.9320 0.4466 15 8 1.8454 -6.9391 -0.7662 16 6 2.4156 -8.1049 1.2050 17 6 2.9142 -9.1596 0.2151 18 6 3.4892 -10.3502 0.9849 19 6 3.9798 -11.3894 0.0100 20 7 4.5297 -12.5330 0.4639 21 8 3.8790 -11.1968 -1.1833 22 6 -0.1541 -3.9065 1.2843 23 1 -1.1723 -4.2934 1.2436 24 8 0.3246 -3.8706 2.6302 25 6 -0.0653 -2.5071 0.6257 26 1 -0.4850 0.8401 0.0004 27 1 2.7571 -3.8624 0.6809 28 1 2.2096 -3.8669 -1.0174 29 1 1.3521 -5.8694 2.0861 30 1 3.2456 -7.7695 1.8267 31 1 1.6398 -8.5373 1.8369 32 1 2.0845 -9.4953 -0.4070 33 1 3.6901 -8.7270 -0.4166 34 1 4.3191 -10.0144 1.6067 35 1 2.7137 -10.7830 1.6170 36 1 4.6093 -12.6875 1.4182 37 1 4.8451 -13.2020 -0.1637 38 1 -0.2352 -3.3627 3.2334 39 1 -0.3135 -1.7309 1.3496 40 1 -0.7307 -2.4484 -0.2355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221172261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:39 Heat of formation + Delta-G solvation = -109.437951 kcal Electronic energy + Delta-G solvation = -22437.497655 eV Core-core repulsion = 18866.514375 eV Total energy + Delta-G solvation = -3570.983279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.91218 -39.47614 -37.87637 -34.77057 -34.35102 -33.93307 -33.84512 -31.66655 -29.22640 -28.19407 -26.83865 -24.49729 -22.98326 -20.74521 -20.54301 -20.17570 -19.66585 -17.81321 -17.32498 -16.94654 -16.63701 -16.44270 -16.22034 -15.29464 -15.01563 -14.80756 -14.26868 -14.09307 -13.64031 -13.54143 -12.98605 -12.95722 -12.61170 -12.21270 -12.10342 -11.79123 -11.57698 -11.32183 -10.97715 -10.89085 -10.81309 -10.59918 -10.39976 -10.24525 -10.10751 -10.00401 -9.82286 -9.57718 -9.25527 -8.67071 -8.58529 -6.79365 -5.75996 -3.07152 2.38979 2.90441 3.15555 3.40246 3.45776 3.47565 3.52322 4.48014 4.51121 4.56989 4.76220 4.80018 4.95880 5.21264 5.27547 5.32876 5.37050 5.41058 5.47358 5.56553 5.74683 5.93950 6.01569 6.07039 6.27465 6.29009 6.45888 6.60855 6.77341 6.99291 6.99528 7.29383 7.42529 7.72844 7.88049 7.98803 8.08148 8.25132 8.55267 9.18011 9.79894 10.46261 11.37667 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.002909 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.742486 B = 9624.311417 C =10038.147191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.596 5.596 10 C 0.132 3.868 11 C 0.143 3.857 12 H 0.099 0.901 13 N -0.711 5.711 14 C 0.506 3.494 15 O -0.541 6.541 16 C -0.139 4.139 17 C -0.091 4.091 18 C -0.142 4.142 19 C 0.513 3.487 20 N -0.862 5.862 21 O -0.536 6.536 22 C 0.066 3.934 23 H 0.060 0.940 24 O -0.561 6.561 25 C 0.149 3.851 26 H 0.253 0.747 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.406 0.594 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.400 0.600 37 H 0.399 0.601 38 H 0.378 0.622 39 H 0.077 0.923 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 -21.533 9.817 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.322 5.322 10 C 0.005 3.995 11 C 0.038 3.962 12 H 0.117 0.883 13 N -0.362 5.362 14 C 0.292 3.708 15 O -0.418 6.418 16 C -0.180 4.180 17 C -0.129 4.129 18 C -0.182 4.182 19 C 0.298 3.702 20 N -0.426 5.426 21 O -0.412 6.412 22 C 0.006 3.994 23 H 0.078 0.922 24 O -0.367 6.367 25 C 0.023 3.977 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.242 0.758 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.228 0.772 37 H 0.230 0.770 38 H 0.225 0.775 39 H 0.095 0.905 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.414 -21.360 7.926 23.038 hybrid contribution 0.169 0.903 0.941 1.315 sum 3.583 -20.458 8.866 22.582 Atomic orbital electron populations 1.69920 1.04971 1.25190 1.57021 1.24800 0.95669 0.97808 1.02268 0.86093 0.78728 0.83358 0.77544 1.21595 1.21640 1.20617 1.19041 0.91222 0.82653 1.42138 0.90592 1.44273 1.09050 0.99797 1.79112 1.21598 0.94437 0.85495 0.98006 1.22095 0.94830 0.84939 0.94361 0.88262 1.45869 1.61764 1.17834 1.10764 1.20643 0.78036 0.83753 0.88402 1.90731 1.56243 1.80823 1.14024 1.21659 1.02119 0.94857 0.99332 1.21085 1.02418 0.92536 0.96885 1.21710 1.02510 0.95686 0.98320 1.20808 0.76700 0.82772 0.89890 1.43942 1.65639 1.21146 1.11824 1.90800 1.55167 1.78145 1.17093 1.23597 0.94713 0.98717 0.82400 0.92211 1.86248 1.55154 1.76199 1.19100 1.22058 0.86926 0.91091 0.97630 0.93724 0.95363 0.95374 0.75822 0.88893 0.89043 0.90349 0.90251 0.88646 0.88721 0.77164 0.77034 0.77463 0.90512 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 10.68 55.49 0.59 -26.34 16 2 C -0.01 -0.27 5.40 -17.43 -0.09 -0.36 16 3 Si 0.91 22.31 29.56 -169.99 -5.03 17.28 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.22 -6.35 10.24 -15.06 -0.15 -6.50 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 N -0.60 -15.58 3.39 -170.07 -0.58 -16.16 16 10 C 0.13 3.00 6.99 -3.06 -0.02 2.98 16 11 C 0.14 2.68 3.12 -66.10 -0.21 2.48 16 12 H 0.10 1.94 7.69 -51.93 -0.40 1.54 16 13 N -0.71 -10.83 5.09 -52.03 -0.26 -11.10 16 14 C 0.51 7.67 7.83 -10.99 -0.09 7.59 16 15 O -0.54 -10.66 15.70 5.56 0.09 -10.57 16 16 C -0.14 -1.36 5.70 -27.88 -0.16 -1.52 16 17 C -0.09 -0.99 3.79 -26.73 -0.10 -1.09 16 18 C -0.14 -0.97 5.70 -27.88 -0.16 -1.13 16 19 C 0.51 4.76 8.10 -10.99 -0.09 4.68 16 20 N -0.86 -4.30 8.87 31.22 0.28 -4.02 16 21 O -0.54 -7.93 16.82 5.55 0.09 -7.84 16 22 C 0.07 1.18 4.28 -24.58 -0.11 1.08 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 O -0.56 -9.09 12.23 -35.23 -0.43 -9.52 16 25 C 0.15 3.49 5.16 -2.53 -0.01 3.48 16 26 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.03 0.65 8.03 -51.93 -0.42 0.24 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.41 5.36 7.57 -40.82 -0.31 5.05 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 33 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.40 0.64 8.83 -40.82 -0.36 0.28 16 37 H 0.40 1.81 8.93 -40.82 -0.36 1.45 16 38 H 0.38 4.79 9.12 45.56 0.42 5.20 16 39 H 0.08 1.95 6.94 -51.93 -0.36 1.59 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -37.77 336.27 -6.50 -44.27 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.13 Total: 7.28 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -1.19 Total: 11.67 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.03 Total: -57.63 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.25 Total: -27.93 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.77 -6.50 -44.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221172261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.169 kcal (2) G-P(sol) polarization free energy of solvation -37.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds