Wall clock time and date at job start Tue Mar 31 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00339 * 2 1 4 4 H 1.48506 * 109.46755 * 274.14484 * 3 2 1 5 5 H 1.48499 * 109.46761 * 34.13706 * 3 2 1 6 6 H 1.48495 * 109.47270 * 154.14058 * 3 2 1 7 7 C 1.38814 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 170.42013 * 7 2 1 9 9 N 1.36938 * 119.99682 * 350.42533 * 7 2 1 10 10 C 1.47027 * 125.64394 * 169.94059 * 9 7 2 11 11 C 1.54324 * 107.26948 * 178.97296 * 10 9 7 12 12 H 1.09001 * 110.71764 * 96.34819 * 11 10 9 13 13 N 1.46495 * 110.72089 * 219.44549 * 11 10 9 14 14 C 1.34776 * 119.99800 * 273.26733 * 13 11 10 15 15 O 1.21282 * 120.00188 * 0.27785 * 14 13 11 16 16 C 1.50699 * 119.99779 * 180.27513 * 14 13 11 17 17 C 1.53003 * 109.47082 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47385 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47542 * 179.97438 * 18 17 16 20 20 N 1.34772 * 120.00417 * 180.02562 * 19 18 17 21 21 O 1.21285 * 119.99612 * 359.97438 * 19 18 17 22 22 C 1.55157 * 102.94192 * 337.80810 * 11 10 9 23 23 H 1.09002 * 111.00625 * 153.57299 * 22 11 10 24 24 O 1.42898 * 111.00687 * 277.42628 * 22 11 10 25 25 C 1.47420 * 125.64953 * 349.98167 * 9 7 2 26 26 H 0.97006 * 119.99906 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.88160 * 59.56103 * 10 9 7 28 28 H 1.08997 * 110.01003 * 298.46356 * 10 9 7 29 29 H 0.97003 * 120.00061 * 93.55017 * 13 11 10 30 30 H 1.08999 * 109.47607 * 300.00269 * 16 14 13 31 31 H 1.09001 * 109.47207 * 60.00745 * 16 14 13 32 32 H 1.08998 * 109.47286 * 300.00075 * 17 16 14 33 33 H 1.09001 * 109.46735 * 60.00157 * 17 16 14 34 34 H 1.08999 * 109.47501 * 300.00090 * 18 17 16 35 35 H 1.09009 * 109.47092 * 60.00049 * 18 17 16 36 36 H 0.97000 * 119.99570 * 0.02562 * 20 19 18 37 37 H 0.96997 * 120.00195 * 179.97438 * 20 19 18 38 38 H 0.96701 * 114.00319 * 180.02562 * 24 22 11 39 39 H 1.08998 * 110.36869 * 322.92606 * 25 9 7 40 40 H 1.08994 * 110.37247 * 85.14986 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4101 2.0969 -1.3965 5 1 1.4942 2.6258 0.7857 6 1 3.5888 1.4164 0.6106 7 6 2.0102 -1.2022 0.0005 8 1 3.0789 -1.2087 -0.1551 9 7 1.3398 -2.3797 0.1983 10 6 1.9020 -3.7263 0.0187 11 6 0.7932 -4.7375 0.3790 12 1 0.2747 -5.0769 -0.5177 13 7 1.3487 -5.8750 1.1161 14 6 1.8498 -6.9320 0.4466 15 8 1.8454 -6.9391 -0.7662 16 6 2.4156 -8.1049 1.2050 17 6 2.9142 -9.1596 0.2151 18 6 3.4892 -10.3502 0.9849 19 6 3.9798 -11.3894 0.0100 20 7 4.5297 -12.5330 0.4639 21 8 3.8790 -11.1968 -1.1833 22 6 -0.1541 -3.9065 1.2843 23 1 -1.1723 -4.2934 1.2436 24 8 0.3246 -3.8706 2.6302 25 6 -0.0653 -2.5071 0.6257 26 1 -0.4850 0.8401 0.0004 27 1 2.7571 -3.8624 0.6809 28 1 2.2096 -3.8669 -1.0174 29 1 1.3521 -5.8694 2.0861 30 1 3.2456 -7.7695 1.8267 31 1 1.6398 -8.5373 1.8369 32 1 2.0845 -9.4953 -0.4070 33 1 3.6901 -8.7270 -0.4166 34 1 4.3191 -10.0144 1.6067 35 1 2.7137 -10.7830 1.6170 36 1 4.6093 -12.6875 1.4182 37 1 4.8451 -13.2020 -0.1637 38 1 -0.2352 -3.3627 3.2334 39 1 -0.3135 -1.7309 1.3496 40 1 -0.7307 -2.4484 -0.2355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221172261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:39 Heat of formation + Delta-G solvation = -144.284194 kcal Electronic energy + Delta-G solvation = -22439.008701 eV Core-core repulsion = 18866.514375 eV Total energy + Delta-G solvation = -3572.494326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07238 -40.41002 -39.39364 -36.37543 -35.45634 -35.14726 -34.54235 -33.58343 -30.62292 -29.57002 -28.42398 -26.37618 -23.99131 -22.44317 -21.67445 -21.17241 -21.05782 -19.21724 -18.42853 -18.23200 -17.66527 -17.44797 -17.00833 -16.91280 -16.66193 -16.07030 -15.77818 -15.47216 -14.77711 -14.68204 -14.60884 -14.31956 -14.28405 -13.67521 -13.19080 -12.99654 -12.90718 -12.74440 -12.70396 -12.38469 -12.28959 -12.12561 -11.94926 -11.87386 -11.67283 -11.07554 -10.89527 -10.78156 -10.71608 -10.59602 -10.04151 -8.89660 -7.92253 -5.26892 1.44853 1.46063 1.56178 1.71297 1.73075 2.17135 2.48253 2.75264 3.19346 3.28180 3.60751 3.79849 3.82937 3.94393 4.05445 4.12807 4.14501 4.30784 4.46987 4.67005 4.69211 4.72797 4.75452 4.84654 4.85951 5.05282 5.21874 5.36488 5.38301 5.43948 5.56467 5.60433 5.96030 6.14922 6.55670 6.69549 6.91209 7.05075 7.38320 7.44711 7.69586 8.35351 9.19229 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.002909 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.742486 B = 9624.311417 C =10038.147191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.058 4.058 3 Si 0.980 3.020 4 H -0.288 1.288 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.248 4.248 8 H 0.071 0.929 9 N -0.616 5.616 10 C 0.132 3.868 11 C 0.153 3.847 12 H 0.088 0.912 13 N -0.698 5.698 14 C 0.498 3.502 15 O -0.595 6.595 16 C -0.124 4.124 17 C -0.090 4.090 18 C -0.130 4.130 19 C 0.504 3.496 20 N -0.839 5.839 21 O -0.606 6.606 22 C 0.094 3.906 23 H 0.098 0.902 24 O -0.559 6.559 25 C 0.150 3.850 26 H 0.251 0.749 27 H 0.026 0.974 28 H 0.001 0.999 29 H 0.421 0.579 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.420 0.580 37 H 0.403 0.597 38 H 0.397 0.603 39 H 0.054 0.946 40 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 -23.030 13.090 26.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.342 5.342 10 C 0.005 3.995 11 C 0.046 3.954 12 H 0.106 0.894 13 N -0.351 5.351 14 C 0.287 3.713 15 O -0.475 6.475 16 C -0.163 4.163 17 C -0.129 4.129 18 C -0.170 4.170 19 C 0.291 3.709 20 N -0.403 5.403 21 O -0.487 6.487 22 C 0.034 3.966 23 H 0.115 0.885 24 O -0.368 6.368 25 C 0.024 3.976 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.019 0.981 29 H 0.259 0.741 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.252 0.748 37 H 0.233 0.767 38 H 0.247 0.753 39 H 0.072 0.928 40 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 3.779 -22.916 11.311 25.833 hybrid contribution 0.098 1.331 -0.090 1.338 sum 3.877 -21.585 11.221 24.634 Atomic orbital electron populations 1.70102 1.06156 1.25742 1.57384 1.25619 0.96634 1.00893 1.02036 0.85063 0.77820 0.79028 0.77353 1.21525 1.21176 1.19644 1.19341 0.91465 0.84186 1.42689 0.91144 1.44567 1.10134 1.00312 1.79193 1.21643 0.95887 0.85579 0.96384 1.21714 0.93471 0.85349 0.94874 0.89367 1.45731 1.61426 1.16666 1.11250 1.21741 0.76785 0.84660 0.88091 1.90722 1.58163 1.81867 1.16787 1.21701 1.04054 0.91879 0.98711 1.20982 1.00359 0.94482 0.97069 1.21693 1.04530 0.93261 0.97502 1.21357 0.76226 0.83975 0.89343 1.43774 1.63556 1.19754 1.13195 1.90781 1.58255 1.79679 1.20006 1.23222 0.96241 0.94524 0.82662 0.88487 1.86207 1.56002 1.76394 1.18153 1.21990 0.85066 0.94148 0.96390 0.93963 0.95600 0.98124 0.74068 0.85699 0.84795 0.93479 0.94118 0.85339 0.84904 0.74763 0.76671 0.75273 0.92802 0.97429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.24 10.68 21.65 0.23 -56.01 16 2 C -0.06 -3.35 5.40 84.86 0.46 -2.89 16 3 Si 0.98 46.28 29.56 68.60 2.03 48.31 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.25 -14.51 10.24 84.03 0.86 -13.65 16 8 H 0.07 4.07 7.85 -2.91 -0.02 4.05 16 9 N -0.62 -33.06 3.39 -691.98 -2.35 -35.41 16 10 C 0.13 6.17 6.99 86.73 0.61 6.78 16 11 C 0.15 5.67 3.12 46.18 0.14 5.81 16 12 H 0.09 3.51 7.69 -2.39 -0.02 3.49 16 13 N -0.70 -19.92 5.09 -436.92 -2.22 -22.14 16 14 C 0.50 14.54 7.83 87.66 0.69 15.23 16 15 O -0.59 -24.16 15.70 -3.04 -0.05 -24.20 16 16 C -0.12 -2.00 5.70 29.85 0.17 -1.83 16 17 C -0.09 -1.87 3.79 30.59 0.12 -1.76 16 18 C -0.13 -1.34 5.70 29.85 0.17 -1.17 16 19 C 0.50 8.70 8.10 87.66 0.71 9.41 16 20 N -0.84 -6.39 8.87 -173.53 -1.54 -7.93 16 21 O -0.61 -18.61 16.82 -3.05 -0.05 -18.66 16 22 C 0.09 3.22 4.28 31.99 0.14 3.36 16 23 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 24 O -0.56 -16.49 12.23 -148.98 -1.82 -18.31 16 25 C 0.15 7.14 5.16 86.86 0.45 7.58 16 26 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 27 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.42 9.58 7.57 -92.71 -0.70 8.88 16 30 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.25 8.06 -2.39 -0.02 1.24 16 33 H 0.04 1.14 8.06 -2.39 -0.02 1.12 16 34 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.13 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.42 -0.22 8.83 -92.71 -0.82 -1.03 16 37 H 0.40 3.00 8.93 -92.71 -0.83 2.17 16 38 H 0.40 8.78 9.12 -74.06 -0.68 8.11 16 39 H 0.05 2.79 6.94 -2.39 -0.02 2.77 16 40 H 0.01 0.41 8.07 -2.39 -0.02 0.39 16 Total: -1.00 -89.20 336.27 -3.19 -92.39 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -1.92 Total: 15.10 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 4.51 Total: 26.86 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -5.88 Total: -121.49 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -1.92 Total: -61.17 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -89.20 -3.19 -92.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221172261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.893 kcal (2) G-P(sol) polarization free energy of solvation -89.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds