Wall clock time and date at job start Tue Mar 31 2020 03:05:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.52250 * 2 1
4 4 C 1.53624 * 109.43672 * 120.21655 * 2 1 3
5 5 N 1.46921 * 108.54731 * 174.72768 * 4 2 1
6 6 C 1.34774 * 120.63726 * 126.36299 * 5 4 2
7 7 O 1.21586 * 120.00497 * 184.94032 * 6 5 4
8 8 N 1.34776 * 119.99345 * 4.94576 * 6 5 4
9 9 C 1.46504 * 119.99666 * 175.01592 * 8 6 5
10 10 C 1.50705 * 109.47166 * 179.97438 * 9 8 6
11 11 O 1.21288 * 119.99580 * 359.72072 * 10 9 8
12 12 N 1.34768 * 119.99967 * 179.97438 * 10 9 8
13 13 C 1.37105 * 120.00137 * 179.97438 * 12 10 9
14 14 H 1.07998 * 119.99546 * 359.97438 * 13 12 10
15 15 C 1.38949 * 120.00026 * 179.97438 * 13 12 10
16 16 N 1.31414 * 119.99911 * 359.97438 * 15 13 12
17 17 Si 1.86804 * 119.99700 * 180.02562 * 15 13 12
18 18 H 1.48494 * 109.47257 * 59.99922 * 17 15 13
19 19 H 1.48501 * 109.46671 * 179.97438 * 17 15 13
20 20 H 1.48500 * 109.46713 * 299.99324 * 17 15 13
21 21 C 1.46931 * 118.73285 * 306.08814 * 5 4 2
22 22 C 1.53188 * 108.77418 * 53.86261 * 21 5 4
23 23 C 1.53035 * 109.31675 * 305.36053 * 22 21 5
24 24 H 1.08997 * 109.46632 * 181.37105 * 23 22 21
25 25 O 1.42901 * 109.45919 * 301.34850 * 23 22 21
26 26 H 1.09001 * 109.46662 * 180.02562 * 1 2 3
27 27 H 1.09000 * 109.47092 * 300.07141 * 1 2 3
28 28 H 1.08993 * 109.47093 * 60.07759 * 1 2 3
29 29 H 1.08995 * 109.73824 * 54.97940 * 4 2 1
30 30 H 1.09004 * 109.65927 * 294.41814 * 4 2 1
31 31 H 0.96999 * 120.00588 * 355.00733 * 8 6 5
32 32 H 1.08998 * 109.47309 * 59.99200 * 9 8 6
33 33 H 1.09003 * 109.47066 * 299.99062 * 9 8 6
34 34 H 0.97006 * 120.00161 * 359.97438 * 12 10 9
35 35 H 0.97000 * 119.99173 * 179.97438 * 16 15 13
36 36 H 1.08999 * 109.58539 * 173.64725 * 21 5 4
37 37 H 1.09001 * 109.58932 * 293.93220 * 21 5 4
38 38 H 1.08999 * 109.49879 * 65.31610 * 22 21 5
39 39 H 1.09007 * 109.49495 * 185.37667 * 22 21 5
40 40 H 0.96692 * 114.00137 * 299.99655 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8942 1.0273 0.0000
4 6 2.0412 -0.7291 1.2519
5 7 3.5047 -0.8292 1.1694
6 6 4.2813 -0.3866 2.1781
7 8 5.4915 -0.3920 2.0611
8 7 3.7162 0.0621 3.3165
9 6 4.5596 0.4405 4.4531
10 6 3.6889 0.9050 5.5920
11 8 2.4828 0.9235 5.4648
12 7 4.2506 1.3048 6.7500
13 6 3.4585 1.7280 7.7860
14 1 2.3844 1.7413 7.6739
15 6 4.0376 2.1396 8.9801
16 7 5.3445 2.1229 9.1166
17 14 2.9582 2.7155 10.3918
18 1 2.0444 1.6171 10.7962
19 1 3.8131 3.0973 11.5445
20 1 2.1594 3.8895 9.9571
21 6 4.1053 -1.4267 -0.0310
22 6 3.5708 -0.6949 -1.2661
23 6 2.0408 -0.7230 -1.2485
24 1 1.6580 -0.2241 -2.1388
25 8 1.5897 -2.0788 -1.2315
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5149 0.8893
28 1 -0.3633 0.5126 -0.8906
29 1 1.6085 -1.7284 1.2983
30 1 1.7631 -0.1665 2.1431
31 1 2.7513 0.1345 3.3833
32 1 5.2295 1.2472 4.1558
33 1 5.1470 -0.4205 4.7723
34 1 5.2153 1.2932 6.8506
35 1 5.7487 2.4106 9.9501
36 1 5.1896 -1.3246 0.0134
37 1 3.8396 -2.4824 -0.0858
38 1 3.9158 0.3390 -1.2542
39 1 3.9339 -1.1892 -2.1673
40 1 1.8759 -2.5982 -1.9953
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001261100422.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:05:58
Heat of formation + Delta-G solvation = -116.757851 kcal
Electronic energy + Delta-G solvation = -22916.518911 eV
Core-core repulsion = 19345.218217 eV
Total energy + Delta-G solvation = -3571.300694 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.48790 -38.80503 -38.00250 -35.45940 -34.49497 -33.72455 -33.15462 -31.57774
-31.27637 -27.61668 -26.76449 -25.23057 -24.24677 -22.41701 -20.63015 -19.63511
-19.48468 -18.33681 -17.80375 -17.20552 -16.17717 -15.60050 -15.54784 -15.29075
-14.92776 -14.47966 -14.44697 -14.15931 -14.08138 -13.80840 -13.39375 -13.16657
-12.85390 -12.33128 -12.16279 -12.00137 -11.92257 -11.66712 -11.60557 -11.43068
-11.16681 -11.08986 -10.64441 -10.49443 -10.29680 -10.16346 -9.87576 -9.60861
-8.88008 -8.60268 -8.37150 -8.08005 -6.49542 -3.91585 2.76651 3.15060
3.22619 3.26573 3.38830 3.77320 3.95270 4.02804 4.17165 4.43741
4.51152 4.69795 4.80393 4.90960 5.10221 5.19135 5.20246 5.29681
5.36664 5.47484 5.50160 5.67936 5.70734 5.82546 5.87852 5.93984
5.95636 6.04155 6.10847 6.18883 6.54040 6.79763 7.10922 7.36250
7.47551 7.94241 8.20189 8.47369 8.81716 9.06409 9.41593 9.89621
10.67354
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.031824 B = 0.003244 C = 0.002999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 879.620175 B = 8628.472616 C = 9335.645528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.099 4.099
3 H 0.085 0.915
4 C 0.119 3.881
5 N -0.630 5.630
6 C 0.708 3.292
7 O -0.598 6.598
8 N -0.725 5.725
9 C 0.127 3.873
10 C 0.429 3.571
11 O -0.598 6.598
12 N -0.549 5.549
13 C -0.305 4.305
14 H 0.105 0.895
15 C 0.026 3.974
16 N -0.895 5.895
17 Si 0.934 3.066
18 H -0.272 1.272
19 H -0.283 1.283
20 H -0.273 1.273
21 C 0.136 3.864
22 C -0.169 4.169
23 C 0.111 3.889
24 H 0.056 0.944
25 O -0.560 6.560
26 H 0.065 0.935
27 H 0.060 0.940
28 H 0.055 0.945
29 H 0.077 0.923
30 H 0.082 0.918
31 H 0.406 0.594
32 H 0.082 0.918
33 H 0.081 0.919
34 H 0.396 0.604
35 H 0.275 0.725
36 H 0.092 0.908
37 H 0.067 0.933
38 H 0.076 0.924
39 H 0.076 0.924
40 H 0.375 0.625
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.881 -5.877 -20.153 21.553
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.118 4.118
3 H 0.104 0.896
4 C -0.004 4.004
5 N -0.368 5.368
6 C 0.409 3.591
7 O -0.478 6.478
8 N -0.385 5.385
9 C -0.001 4.001
10 C 0.215 3.785
11 O -0.485 6.485
12 N -0.184 5.184
13 C -0.435 4.435
14 H 0.123 0.877
15 C -0.177 4.177
16 N -0.535 5.535
17 Si 0.760 3.240
18 H -0.198 1.198
19 H -0.209 1.209
20 H -0.198 1.198
21 C 0.013 3.987
22 C -0.208 4.208
23 C 0.052 3.948
24 H 0.073 0.927
25 O -0.365 6.365
26 H 0.085 0.915
27 H 0.079 0.921
28 H 0.074 0.926
29 H 0.096 0.904
30 H 0.100 0.900
31 H 0.246 0.754
32 H 0.100 0.900
33 H 0.099 0.901
34 H 0.230 0.770
35 H 0.084 0.916
36 H 0.110 0.890
37 H 0.085 0.915
38 H 0.095 0.905
39 H 0.094 0.906
40 H 0.222 0.778
Dipole moment (debyes) X Y Z Total
from point charges -4.924 -5.610 -19.510 20.890
hybrid contribution -0.033 0.252 0.283 0.380
sum -4.957 -5.358 -19.228 20.567
Atomic orbital electron populations
1.21717 0.93705 1.02798 1.01920 1.21621 0.96858 0.99216 0.94131
0.89647 1.21724 0.79733 1.01349 0.97598 1.47166 1.05963 1.65173
1.18478 1.15764 0.85022 0.78166 0.80117 1.90878 1.12187 1.62936
1.81754 1.44977 1.11334 1.69682 1.12497 1.20793 0.92781 1.00995
0.85557 1.19763 0.88745 0.85429 0.84585 1.90482 1.14688 1.60984
1.82368 1.41778 1.09909 1.55550 1.11132 1.19683 0.92611 1.40211
0.90988 0.87741 1.25322 0.96153 0.97212 0.99009 1.69612 1.09280
1.46901 1.27731 0.85872 0.79201 0.79285 0.79602 1.19782 1.20868
1.19786 1.21274 0.99227 0.96068 0.82142 1.22658 0.96709 1.02639
0.98782 1.21756 0.92332 0.83143 0.97549 0.92652 1.86530 1.77865
1.22736 1.49381 0.91545 0.92107 0.92630 0.90449 0.89993 0.75378
0.89990 0.90099 0.77007 0.91551 0.88967 0.91462 0.90501 0.90551
0.77831
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.25 9.06 37.16 0.34 -0.91 16
2 C -0.10 -0.95 2.72 -90.27 -0.25 -1.20 16
3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
4 C 0.12 1.41 5.46 -3.49 -0.02 1.39 16
5 N -0.63 -8.63 2.97 -178.23 -0.53 -9.16 16
6 C 0.71 12.38 8.30 -86.92 -0.72 11.66 16
7 O -0.60 -12.17 15.77 5.29 0.08 -12.09 16
8 N -0.73 -13.03 5.44 -66.41 -0.36 -13.39 16
9 C 0.13 2.46 6.16 -5.19 -0.03 2.43 16
10 C 0.43 10.04 7.85 -10.99 -0.09 9.95 16
11 O -0.60 -15.49 15.24 5.55 0.08 -15.40 16
12 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16
13 C -0.31 -8.37 9.68 -14.93 -0.14 -8.51 16
14 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16
15 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16
16 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16
17 Si 0.93 20.65 29.55 -169.99 -5.02 15.62 16
18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16
19 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16
20 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16
21 C 0.14 1.53 6.20 -3.71 -0.02 1.50 16
22 C -0.17 -1.39 5.80 -26.62 -0.15 -1.55 16
23 C 0.11 0.89 3.19 -26.69 -0.09 0.80 16
24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
25 O -0.56 -4.38 11.43 -35.23 -0.40 -4.79 16
26 H 0.07 0.60 7.72 -51.93 -0.40 0.20 16
27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
29 H 0.08 0.92 7.81 -51.93 -0.41 0.51 16
30 H 0.08 1.04 5.64 -51.93 -0.29 0.74 16
31 H 0.41 7.16 4.92 -40.82 -0.20 6.96 16
32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16
33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16
34 H 0.40 9.58 7.90 -40.82 -0.32 9.25 16
35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16
36 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16
37 H 0.07 0.69 7.82 -51.93 -0.41 0.29 16
38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16
39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
40 H 0.37 1.47 9.08 45.56 0.41 1.88 16
LS Contribution 328.45 15.07 4.95 4.95
Total: -1.00 -32.61 328.45 -6.67 -39.28
By element:
Atomic # 1 Polarization: 20.87 SS G_CDS: -4.87 Total: 16.00 kcal
Atomic # 6 Polarization: 17.43 SS G_CDS: -1.27 Total: 16.16 kcal
Atomic # 7 Polarization: -59.52 SS G_CDS: -0.22 Total: -59.74 kcal
Atomic # 8 Polarization: -32.04 SS G_CDS: -0.23 Total: -32.28 kcal
Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -32.61 -6.67 -39.28 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001261100422.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.475 kcal
(2) G-P(sol) polarization free energy of solvation -32.610 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.758 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds