Wall clock time and date at job start Tue Mar 31 2020 03:05:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.52250 * 2 1
4 4 C 1.53624 * 109.43672 * 120.21655 * 2 1 3
5 5 N 1.46921 * 108.54731 * 174.72768 * 4 2 1
6 6 C 1.34774 * 120.63726 * 126.36299 * 5 4 2
7 7 O 1.21586 * 120.00497 * 184.94032 * 6 5 4
8 8 N 1.34776 * 119.99345 * 4.94576 * 6 5 4
9 9 C 1.46504 * 119.99666 * 175.01592 * 8 6 5
10 10 C 1.50705 * 109.47166 * 179.97438 * 9 8 6
11 11 O 1.21288 * 119.99580 * 359.72072 * 10 9 8
12 12 N 1.34768 * 119.99967 * 179.97438 * 10 9 8
13 13 C 1.37105 * 120.00137 * 179.97438 * 12 10 9
14 14 H 1.07998 * 119.99546 * 359.97438 * 13 12 10
15 15 C 1.38949 * 120.00026 * 179.97438 * 13 12 10
16 16 N 1.31414 * 119.99911 * 359.97438 * 15 13 12
17 17 Si 1.86804 * 119.99700 * 180.02562 * 15 13 12
18 18 H 1.48494 * 109.47257 * 59.99922 * 17 15 13
19 19 H 1.48501 * 109.46671 * 179.97438 * 17 15 13
20 20 H 1.48500 * 109.46713 * 299.99324 * 17 15 13
21 21 C 1.46931 * 118.73285 * 306.08814 * 5 4 2
22 22 C 1.53188 * 108.77418 * 53.86261 * 21 5 4
23 23 C 1.53035 * 109.31675 * 305.36053 * 22 21 5
24 24 H 1.08997 * 109.46632 * 181.37105 * 23 22 21
25 25 O 1.42901 * 109.45919 * 301.34850 * 23 22 21
26 26 H 1.09001 * 109.46662 * 180.02562 * 1 2 3
27 27 H 1.09000 * 109.47092 * 300.07141 * 1 2 3
28 28 H 1.08993 * 109.47093 * 60.07759 * 1 2 3
29 29 H 1.08995 * 109.73824 * 54.97940 * 4 2 1
30 30 H 1.09004 * 109.65927 * 294.41814 * 4 2 1
31 31 H 0.96999 * 120.00588 * 355.00733 * 8 6 5
32 32 H 1.08998 * 109.47309 * 59.99200 * 9 8 6
33 33 H 1.09003 * 109.47066 * 299.99062 * 9 8 6
34 34 H 0.97006 * 120.00161 * 359.97438 * 12 10 9
35 35 H 0.97000 * 119.99173 * 179.97438 * 16 15 13
36 36 H 1.08999 * 109.58539 * 173.64725 * 21 5 4
37 37 H 1.09001 * 109.58932 * 293.93220 * 21 5 4
38 38 H 1.08999 * 109.49879 * 65.31610 * 22 21 5
39 39 H 1.09007 * 109.49495 * 185.37667 * 22 21 5
40 40 H 0.96692 * 114.00137 * 299.99655 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8942 1.0273 0.0000
4 6 2.0412 -0.7291 1.2519
5 7 3.5047 -0.8292 1.1694
6 6 4.2813 -0.3866 2.1781
7 8 5.4915 -0.3920 2.0611
8 7 3.7162 0.0621 3.3165
9 6 4.5596 0.4405 4.4531
10 6 3.6889 0.9050 5.5920
11 8 2.4828 0.9235 5.4648
12 7 4.2506 1.3048 6.7500
13 6 3.4585 1.7280 7.7860
14 1 2.3844 1.7413 7.6739
15 6 4.0376 2.1396 8.9801
16 7 5.3445 2.1229 9.1166
17 14 2.9582 2.7155 10.3918
18 1 2.0444 1.6171 10.7962
19 1 3.8131 3.0973 11.5445
20 1 2.1594 3.8895 9.9571
21 6 4.1053 -1.4267 -0.0310
22 6 3.5708 -0.6949 -1.2661
23 6 2.0408 -0.7230 -1.2485
24 1 1.6580 -0.2241 -2.1388
25 8 1.5897 -2.0788 -1.2315
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5149 0.8893
28 1 -0.3633 0.5126 -0.8906
29 1 1.6085 -1.7284 1.2983
30 1 1.7631 -0.1665 2.1431
31 1 2.7513 0.1345 3.3833
32 1 5.2295 1.2472 4.1558
33 1 5.1470 -0.4205 4.7723
34 1 5.2153 1.2932 6.8506
35 1 5.7487 2.4106 9.9501
36 1 5.1896 -1.3246 0.0134
37 1 3.8396 -2.4824 -0.0858
38 1 3.9158 0.3390 -1.2542
39 1 3.9339 -1.1892 -2.1673
40 1 1.8759 -2.5982 -1.9953
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001261100422.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:05:58
Heat of formation + Delta-G solvation = -142.712529 kcal
Electronic energy + Delta-G solvation = -22917.644391 eV
Core-core repulsion = 19345.218217 eV
Total energy + Delta-G solvation = -3572.426173 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.67048 -40.28373 -39.37981 -36.35890 -36.28659 -35.39843 -34.02583 -33.39190
-32.37350 -29.20325 -27.60027 -26.69689 -25.67585 -23.27655 -21.64388 -21.39803
-20.62206 -20.10771 -19.31184 -17.88245 -17.57119 -17.27250 -16.90256 -16.58571
-16.04754 -16.01278 -15.86638 -15.40897 -15.25154 -15.08196 -14.63113 -14.32264
-13.96129 -13.59307 -13.53990 -13.51253 -13.07799 -12.89936 -12.87553 -12.47282
-12.43969 -12.20898 -12.13309 -11.94259 -11.56642 -11.51036 -11.15340 -10.79306
-10.56837 -10.32330 -10.10072 -9.50072 -8.51056 -6.01581 1.38121 1.42122
1.50628 1.56786 1.88476 2.04186 2.28016 2.79739 3.12996 3.16007
3.38248 3.70374 3.78503 3.94584 4.09077 4.19136 4.30549 4.34118
4.39749 4.43758 4.52701 4.60776 4.77094 4.79604 4.84704 4.92540
5.10424 5.14823 5.20632 5.28861 5.38195 5.45383 5.53480 5.87616
5.91648 6.47411 6.85341 7.00533 7.02771 7.39722 7.47465 7.93472
8.65701
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.031824 B = 0.003244 C = 0.002999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 879.620175 B = 8628.472616 C = 9335.645528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.100 4.100
3 H 0.080 0.920
4 C 0.118 3.882
5 N -0.623 5.623
6 C 0.704 3.296
7 O -0.630 6.630
8 N -0.727 5.727
9 C 0.140 3.860
10 C 0.433 3.567
11 O -0.624 6.624
12 N -0.557 5.557
13 C -0.339 4.339
14 H 0.087 0.913
15 C -0.010 4.010
16 N -0.916 5.916
17 Si 0.998 3.002
18 H -0.269 1.269
19 H -0.271 1.271
20 H -0.269 1.269
21 C 0.130 3.870
22 C -0.160 4.160
23 C 0.118 3.882
24 H 0.078 0.922
25 O -0.573 6.573
26 H 0.062 0.938
27 H 0.053 0.947
28 H 0.070 0.930
29 H 0.079 0.921
30 H 0.069 0.931
31 H 0.408 0.592
32 H 0.091 0.909
33 H 0.091 0.909
34 H 0.399 0.601
35 H 0.280 0.720
36 H 0.074 0.926
37 H 0.079 0.921
38 H 0.067 0.933
39 H 0.107 0.893
40 H 0.394 0.606
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.575 -6.105 -21.403 22.944
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.119 4.119
3 H 0.099 0.901
4 C -0.005 4.005
5 N -0.360 5.360
6 C 0.405 3.595
7 O -0.512 6.512
8 N -0.387 5.387
9 C 0.012 3.988
10 C 0.220 3.780
11 O -0.512 6.512
12 N -0.193 5.193
13 C -0.468 4.468
14 H 0.105 0.895
15 C -0.211 4.211
16 N -0.556 5.556
17 Si 0.821 3.179
18 H -0.195 1.195
19 H -0.196 1.196
20 H -0.194 1.194
21 C 0.007 3.993
22 C -0.199 4.199
23 C 0.059 3.941
24 H 0.095 0.905
25 O -0.381 6.381
26 H 0.081 0.919
27 H 0.072 0.928
28 H 0.089 0.911
29 H 0.098 0.902
30 H 0.087 0.913
31 H 0.248 0.752
32 H 0.109 0.891
33 H 0.109 0.891
34 H 0.233 0.767
35 H 0.090 0.910
36 H 0.092 0.908
37 H 0.098 0.902
38 H 0.086 0.914
39 H 0.126 0.874
40 H 0.243 0.757
Dipole moment (debyes) X Y Z Total
from point charges -5.626 -5.865 -20.814 22.344
hybrid contribution 0.173 0.260 0.595 0.672
sum -5.453 -5.605 -20.219 21.678
Atomic orbital electron populations
1.21669 0.92878 1.02678 1.02373 1.21634 0.97488 0.98917 0.93881
0.90137 1.21826 0.78486 1.01625 0.98522 1.47295 1.06601 1.63973
1.18120 1.15902 0.84889 0.78191 0.80492 1.90850 1.13597 1.64371
1.82405 1.44936 1.11200 1.70108 1.12476 1.20604 0.92116 1.01552
0.84556 1.20369 0.88777 0.83949 0.84878 1.90458 1.16136 1.61683
1.82952 1.41818 1.09903 1.56140 1.11419 1.19722 0.92239 1.42344
0.92512 0.89512 1.26144 0.97486 0.96594 1.00851 1.69681 1.10441
1.46906 1.28578 0.84918 0.77631 0.78771 0.76605 1.19453 1.19603
1.19424 1.21502 0.98287 0.97116 0.82355 1.22622 0.96994 1.01956
0.98292 1.21670 0.91789 0.83472 0.97192 0.90467 1.86494 1.78013
1.22729 1.50862 0.91874 0.92780 0.91101 0.90249 0.91322 0.75207
0.89100 0.89077 0.76686 0.91029 0.90762 0.90234 0.91432 0.87423
0.75666
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.17 9.06 71.98 0.65 -1.52 16
2 C -0.10 -1.77 2.72 -10.57 -0.03 -1.80 16
3 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
4 C 0.12 2.72 5.46 86.51 0.47 3.19 16
5 N -0.62 -16.75 2.97 -836.08 -2.48 -19.23 16
6 C 0.70 24.65 8.30 179.06 1.49 26.14 16
7 O -0.63 -25.77 15.77 -3.99 -0.06 -25.83 16
8 N -0.73 -26.33 5.44 -482.28 -2.62 -28.95 16
9 C 0.14 5.45 6.16 85.63 0.53 5.98 16
10 C 0.43 20.58 7.85 87.66 0.69 21.27 16
11 O -0.62 -32.90 15.24 -3.05 -0.05 -32.95 16
12 N -0.56 -28.49 5.29 -306.99 -1.62 -30.12 16
13 C -0.34 -18.86 9.68 84.04 0.81 -18.05 16
14 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16
15 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16
16 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16
17 Si 1.00 41.94 29.55 68.60 2.03 43.97 16
18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16
19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16
20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16
21 C 0.13 2.74 6.20 86.36 0.54 3.27 16
22 C -0.16 -2.24 5.80 30.67 0.18 -2.06 16
23 C 0.12 1.54 3.19 30.62 0.10 1.64 16
24 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16
25 O -0.57 -7.26 11.43 -148.98 -1.70 -8.96 16
26 H 0.06 1.04 7.72 -2.39 -0.02 1.02 16
27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
29 H 0.08 1.81 7.81 -2.39 -0.02 1.79 16
30 H 0.07 1.75 5.64 -2.38 -0.01 1.74 16
31 H 0.41 14.60 4.92 -92.71 -0.46 14.14 16
32 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16
33 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16
34 H 0.40 19.62 7.90 -92.70 -0.73 18.89 16
35 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16
36 H 0.07 1.86 7.00 -2.39 -0.02 1.84 16
37 H 0.08 1.49 7.82 -2.39 -0.02 1.47 16
38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
39 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16
40 H 0.39 1.69 9.08 -74.06 -0.67 1.02 16
Total: -1.00 -69.79 328.45 -1.11 -70.90
By element:
Atomic # 1 Polarization: 42.73 SS G_CDS: -0.77 Total: 41.96 kcal
Atomic # 6 Polarization: 32.13 SS G_CDS: 5.89 Total: 38.02 kcal
Atomic # 7 Polarization: -120.65 SS G_CDS: -6.44 Total: -127.10 kcal
Atomic # 8 Polarization: -65.93 SS G_CDS: -1.81 Total: -67.74 kcal
Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal
Total: -69.79 -1.11 -70.90 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001261100422.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.813 kcal
(2) G-P(sol) polarization free energy of solvation -69.788 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.602 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.111 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal
(6) G-S(sol) free energy of system = (1) + (5) -142.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds