Wall clock time and date at job start Tue Mar 31 2020 02:26:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86802 * 119.99934 * 2 1
4 4 H 1.48498 * 109.47493 * 265.00075 * 3 2 1
5 5 H 1.48501 * 109.47059 * 25.00420 * 3 2 1
6 6 H 1.48496 * 109.46991 * 145.00105 * 3 2 1
7 7 C 1.37881 * 120.00145 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99547 * 184.91661 * 7 2 1
9 9 C 1.50697 * 119.99877 * 4.91987 * 7 2 1
10 10 O 1.42904 * 110.88657 * 63.74821 * 9 7 2
11 11 C 1.55158 * 111.00373 * 299.86876 * 9 7 2
12 12 C 1.54428 * 102.89598 * 206.40781 * 11 9 7
13 13 N 1.47024 * 107.28023 * 22.18651 * 12 11 9
14 14 C 1.34778 * 125.65047 * 181.09566 * 13 12 11
15 15 O 1.21276 * 119.99792 * 184.96390 * 14 13 12
16 16 C 1.50701 * 119.99702 * 4.96096 * 14 13 12
17 17 O 1.42895 * 109.54673 * 321.83663 * 16 14 13
18 18 C 1.53177 * 109.54155 * 201.65366 * 16 14 13
19 19 C 1.53104 * 109.15542 * 183.24512 * 18 16 14
20 20 O 1.42895 * 109.48989 * 57.47619 * 19 18 16
21 21 C 1.42904 * 114.09923 * 298.88922 * 20 19 18
22 22 C 1.53096 * 109.41406 * 61.15386 * 21 20 19
23 23 C 1.47430 * 108.70271 * 1.06100 * 13 12 11
24 24 H 0.96999 * 119.99836 * 359.97438 * 1 2 3
25 25 H 0.96695 * 114.00453 * 295.62347 * 10 9 7
26 26 H 1.09002 * 110.71850 * 324.75286 * 11 9 7
27 27 H 1.09002 * 110.72168 * 88.02485 * 11 9 7
28 28 H 1.09002 * 109.87527 * 262.76654 * 12 11 9
29 29 H 1.08998 * 110.00699 * 141.68040 * 12 11 9
30 30 H 0.96703 * 113.99451 * 304.31739 * 17 16 14
31 31 H 1.08998 * 109.52047 * 303.06211 * 18 16 14
32 32 H 1.08996 * 109.51971 * 63.25300 * 18 16 14
33 33 H 1.08998 * 109.40439 * 297.49391 * 19 18 16
34 34 H 1.09004 * 109.48286 * 177.50784 * 19 18 16
35 35 H 1.09000 * 109.48144 * 301.17851 * 21 20 19
36 36 H 1.08999 * 109.48590 * 181.14165 * 21 20 19
37 37 H 1.09007 * 109.52291 * 182.48521 * 22 21 20
38 38 H 1.09003 * 109.57262 * 62.33185 * 22 21 20
39 39 H 1.09002 * 110.36640 * 217.03559 * 23 13 12
40 40 H 1.08997 * 110.36998 * 94.70930 * 23 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.6023 1.9855 -1.3947
5 1 1.3977 2.6809 0.5918
6 1 3.4898 1.4730 0.8030
7 6 2.0046 -1.1941 -0.0005
8 1 3.0816 -1.1957 0.0796
9 6 1.2553 -2.4967 -0.1130
10 8 0.5804 -2.5894 -1.3693
11 6 0.2619 -2.6705 1.0661
12 6 0.1316 -4.2047 1.1838
13 7 1.3295 -4.7933 0.5671
14 6 1.5854 -6.1113 0.4493
15 8 2.6492 -6.4849 0.0024
16 6 0.5498 -7.1207 0.8731
17 8 -0.1105 -6.6612 2.0541
18 6 1.2293 -8.4642 1.1556
19 6 0.1612 -9.5034 1.5065
20 8 -0.7782 -9.6023 0.4342
21 6 -1.4783 -8.3876 0.1579
22 6 -0.4764 -7.3040 -0.2492
23 6 2.2040 -3.7030 0.0980
24 1 -0.4850 0.8400 0.0004
25 1 -0.1146 -1.9284 -1.4922
26 1 0.6731 -2.2468 1.9824
27 1 -0.7011 -2.2181 0.8290
28 1 -0.7607 -4.5424 0.6566
29 1 0.0742 -4.4948 2.2329
30 1 0.4880 -6.4630 2.7874
31 1 1.7753 -8.7895 0.2701
32 1 1.9206 -8.3541 1.9911
33 1 -0.3562 -9.1982 2.4160
34 1 0.6349 -10.4722 1.6653
35 1 -2.0171 -8.0676 1.0498
36 1 -2.1858 -8.5524 -0.6547
37 1 -1.0037 -6.3650 -0.4177
38 1 0.0343 -7.6042 -1.1643
39 1 2.6825 -3.9782 -0.8419
40 1 2.9548 -3.4676 0.8523
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001299889860.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:26:56
Heat of formation + Delta-G solvation = -177.960478 kcal
Electronic energy + Delta-G solvation = -24317.580800 eV
Core-core repulsion = 20711.333410 eV
Total energy + Delta-G solvation = -3606.247390 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.145 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.62108 -38.74489 -37.28455 -36.32578 -34.29496 -32.30591 -32.06437 -31.25373
-29.78782 -28.36544 -26.09991 -24.68370 -23.75593 -22.34360 -20.50403 -19.90211
-19.39006 -17.46106 -17.07658 -16.58796 -16.08979 -15.62004 -15.37926 -15.18688
-14.99564 -14.69506 -14.34085 -13.90710 -13.50184 -13.24454 -12.97047 -12.66742
-12.45901 -12.25230 -11.99242 -11.81191 -11.56765 -11.45510 -11.30777 -11.18959
-10.90994 -10.75495 -10.58356 -10.50769 -10.33095 -10.04498 -9.82787 -9.43557
-9.03737 -8.73788 -8.25793 -8.05069 -6.31360 -4.40132 2.80518 3.18374
3.25288 3.27226 3.37248 3.78638 4.03168 4.23820 4.54651 4.67072
4.73185 4.88676 4.95639 5.17632 5.35626 5.38486 5.47235 5.56143
5.56978 5.68479 5.70457 5.86230 5.92382 5.98411 6.06386 6.12041
6.32423 6.37515 6.59762 6.87569 6.90418 7.09333 7.25926 7.34822
7.35802 7.69483 7.97316 8.05394 8.47646 8.62617 9.23435 9.32073
10.75072
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.038499 B = 0.004311 C = 0.004171
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 727.119538 B = 6493.702865 C = 6710.841229
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.075 3.925
3 Si 0.902 3.098
4 H -0.277 1.277
5 H -0.285 1.285
6 H -0.273 1.273
7 C -0.537 4.537
8 H 0.064 0.936
9 C 0.247 3.753
10 O -0.582 6.582
11 C -0.136 4.136
12 C 0.106 3.894
13 N -0.596 5.596
14 C 0.496 3.504
15 O -0.550 6.550
16 C 0.127 3.873
17 O -0.544 6.544
18 C -0.165 4.165
19 C 0.068 3.932
20 O -0.385 6.385
21 C 0.069 3.931
22 C -0.138 4.138
23 C 0.118 3.882
24 H 0.267 0.733
25 H 0.378 0.622
26 H 0.067 0.933
27 H 0.088 0.912
28 H 0.058 0.942
29 H 0.061 0.939
30 H 0.380 0.620
31 H 0.092 0.908
32 H 0.078 0.922
33 H 0.057 0.943
34 H 0.094 0.906
35 H 0.062 0.938
36 H 0.096 0.904
37 H 0.089 0.911
38 H 0.088 0.912
39 H 0.068 0.932
40 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.654 -12.400 4.973 13.851
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.129 4.129
3 Si 0.729 3.271
4 H -0.203 1.203
5 H -0.211 1.211
6 H -0.198 1.198
7 C -0.576 4.576
8 H 0.082 0.918
9 C 0.207 3.793
10 O -0.390 6.390
11 C -0.175 4.175
12 C -0.016 4.016
13 N -0.328 5.328
14 C 0.283 3.717
15 O -0.429 6.429
16 C 0.083 3.917
17 O -0.351 6.351
18 C -0.204 4.204
19 C -0.009 4.009
20 O -0.304 6.304
21 C -0.008 4.008
22 C -0.176 4.176
23 C -0.004 4.004
24 H 0.077 0.923
25 H 0.226 0.774
26 H 0.085 0.915
27 H 0.106 0.894
28 H 0.077 0.923
29 H 0.079 0.921
30 H 0.228 0.772
31 H 0.110 0.890
32 H 0.096 0.904
33 H 0.075 0.925
34 H 0.112 0.888
35 H 0.080 0.920
36 H 0.114 0.886
37 H 0.108 0.892
38 H 0.106 0.894
39 H 0.087 0.913
40 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -3.381 -13.292 4.188 14.340
hybrid contribution 0.644 1.942 0.611 2.135
sum -2.737 -11.350 4.799 12.623
Atomic orbital electron populations
1.69792 1.05933 1.27594 1.49773 1.24976 0.95002 0.99483 0.93401
0.86452 0.79753 0.82359 0.78533 1.20305 1.21103 1.19784 1.21407
0.93995 0.90326 1.51827 0.91819 1.19615 0.87959 0.90639 0.81080
1.86163 1.54837 1.59401 1.38611 1.23242 1.02953 0.90128 1.01169
1.22311 0.86793 0.96029 0.96515 1.48671 1.22512 1.04654 1.56930
1.20859 0.88240 0.82675 0.79943 1.90670 1.25668 1.79422 1.47187
1.21325 0.91609 0.91601 0.87122 1.86581 1.37653 1.87799 1.23028
1.22640 0.98806 0.94603 1.04335 1.22503 0.89633 0.98958 0.89819
1.87902 1.55353 1.33375 1.53734 1.22511 0.93328 0.83867 1.01104
1.22162 0.97396 1.01451 0.96618 1.22418 0.93276 0.85787 0.98881
0.92269 0.77373 0.91466 0.89355 0.92344 0.92097 0.77204 0.88987
0.90355 0.92517 0.88832 0.92008 0.88619 0.89234 0.89368 0.91320
0.90985
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -22.49 10.78 55.43 0.60 -21.89 16
2 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16
3 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16
4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16
6 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16
7 C -0.54 -13.78 8.27 -34.44 -0.28 -14.07 16
8 H 0.06 1.64 7.79 -52.49 -0.41 1.23 16
9 C 0.25 5.83 0.87 -89.62 -0.08 5.75 16
10 O -0.58 -14.42 13.16 -35.23 -0.46 -14.88 16
11 C -0.14 -2.86 5.25 -24.84 -0.13 -2.99 16
12 C 0.11 1.87 5.51 -3.01 -0.02 1.85 16
13 N -0.60 -11.42 3.33 -170.45 -0.57 -11.98 16
14 C 0.50 9.05 6.75 -10.98 -0.07 8.97 16
15 O -0.55 -11.73 16.29 5.56 0.09 -11.64 16
16 C 0.13 1.78 0.68 -91.59 -0.06 1.72 16
17 O -0.54 -6.63 9.24 -35.23 -0.33 -6.95 16
18 C -0.17 -2.05 4.70 -26.59 -0.12 -2.18 16
19 C 0.07 0.73 6.69 37.21 0.25 0.98 16
20 O -0.38 -4.87 10.77 -35.23 -0.38 -5.25 16
21 C 0.07 0.80 6.70 37.21 0.25 1.04 16
22 C -0.14 -1.87 5.13 -26.59 -0.14 -2.01 16
23 C 0.12 2.59 6.07 -2.53 -0.02 2.58 16
24 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16
25 H 0.38 9.23 7.89 45.56 0.36 9.58 16
26 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16
27 H 0.09 1.96 7.41 -51.93 -0.38 1.57 16
28 H 0.06 1.02 7.12 -51.93 -0.37 0.65 16
29 H 0.06 0.93 6.55 -51.93 -0.34 0.59 16
30 H 0.38 3.68 8.58 45.56 0.39 4.07 16
31 H 0.09 1.29 7.78 -51.93 -0.40 0.88 16
32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16
33 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16
34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
35 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16
36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16
37 H 0.09 1.27 7.12 -51.93 -0.37 0.90 16
38 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16
39 H 0.07 1.62 8.09 -51.93 -0.42 1.20 16
40 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16
LS Contribution 317.25 15.07 4.78 4.78
Total: -1.00 -28.84 317.25 -6.23 -35.06
By element:
Atomic # 1 Polarization: 18.83 SS G_CDS: -4.42 Total: 14.41 kcal
Atomic # 6 Polarization: 3.95 SS G_CDS: -0.52 Total: 3.43 kcal
Atomic # 7 Polarization: -33.90 SS G_CDS: 0.03 Total: -33.87 kcal
Atomic # 8 Polarization: -37.64 SS G_CDS: -1.08 Total: -38.72 kcal
Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -28.84 -6.23 -35.06 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001299889860.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -142.899 kcal
(2) G-P(sol) polarization free energy of solvation -28.836 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.735 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.062 kcal
(6) G-S(sol) free energy of system = (1) + (5) -177.960 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds