Wall clock time and date at job start Tue Mar 31 2020 02:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86803 * 119.99982 * 2 1 4 4 H 1.48500 * 109.46942 * 269.99397 * 3 2 1 5 5 H 1.48493 * 109.47274 * 29.99913 * 3 2 1 6 6 H 1.48500 * 109.47089 * 150.00153 * 3 2 1 7 7 C 1.38957 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99888 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99935 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00030 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00262 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47550 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 N 1.46896 * 109.47255 * 179.97438 * 17 16 14 19 19 C 1.47011 * 111.00147 * 293.63572 * 18 17 16 20 20 C 1.53094 * 109.25974 * 177.60789 * 19 18 17 21 21 O 1.43021 * 109.25896 * 56.84664 * 20 19 18 22 22 C 1.43018 * 113.73452 * 301.32819 * 21 20 19 23 23 C 1.47014 * 111.00110 * 169.99532 * 18 17 16 24 24 H 0.97003 * 120.00258 * 0.02562 * 1 2 3 25 25 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47333 * 59.99721 * 12 10 9 27 27 H 1.09002 * 109.47271 * 300.00155 * 12 10 9 28 28 H 0.97000 * 119.99484 * 359.97438 * 13 12 10 29 29 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 30 30 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 31 31 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 32 32 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 33 33 H 1.09000 * 109.50332 * 297.54157 * 19 18 17 34 34 H 1.08997 * 109.50991 * 57.67014 * 19 18 17 35 35 H 1.09001 * 109.50572 * 296.91080 * 20 19 18 36 36 H 1.09001 * 109.54430 * 176.80128 * 20 19 18 37 37 H 1.08991 * 109.50838 * 298.73244 * 22 21 20 38 38 H 1.09003 * 109.53416 * 178.62445 * 22 21 20 39 39 H 1.09003 * 109.50880 * 302.33143 * 23 18 17 40 40 H 1.09008 * 109.50352 * 62.41683 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0000 13 7 2.1957 -5.9765 0.0007 14 6 1.7465 -7.2472 -0.0002 15 8 0.5540 -7.4688 -0.0011 16 6 2.7258 -8.3926 0.0068 17 6 1.9608 -9.7176 0.0112 18 7 2.9153 -10.8341 0.0174 19 6 3.6779 -10.8824 -1.2385 20 6 4.6994 -12.0204 -1.1657 21 8 4.0183 -13.2492 -0.8983 22 6 3.2660 -13.2376 0.3180 23 6 2.2300 -12.1119 0.2602 24 1 -0.4851 0.8400 -0.0004 25 1 0.3534 -2.3906 0.0005 26 1 0.6174 -4.9205 -0.8902 27 1 0.6167 -4.9209 0.8897 28 1 3.1494 -5.7992 0.0011 29 1 3.3542 -8.3388 -0.8822 30 1 3.3507 -8.3309 0.8977 31 1 1.3324 -9.7714 0.9003 32 1 1.3358 -9.7793 -0.8797 33 1 2.9968 -11.0574 -2.0713 34 1 4.1977 -9.9356 -1.3853 35 1 5.4129 -11.8184 -0.3668 36 1 5.2285 -12.0968 -2.1156 37 1 3.9378 -13.0711 1.1599 38 1 2.7578 -14.1939 0.4414 39 1 1.6928 -12.0626 1.2074 40 1 1.5252 -12.3062 -0.5484 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322790757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:51 Heat of formation + Delta-G solvation = -118.576687 kcal Electronic energy + Delta-G solvation = -21860.838000 eV Core-core repulsion = 18289.458436 eV Total energy + Delta-G solvation = -3571.379565 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06701 -39.44120 -38.16607 -36.24944 -34.48397 -33.69655 -31.86298 -31.43327 -31.27278 -28.20074 -26.72704 -24.56407 -24.36614 -22.67315 -20.69413 -20.08176 -19.55674 -18.14088 -17.48896 -16.54170 -16.45338 -15.94952 -15.75692 -15.39508 -15.35804 -15.17641 -14.84284 -14.50155 -14.25797 -14.09721 -13.75793 -13.20129 -12.97344 -12.64451 -12.31875 -12.20838 -11.97282 -11.74252 -11.66997 -11.63439 -11.14977 -11.11693 -10.81944 -10.48135 -10.34546 -10.01543 -9.76411 -9.66475 -8.84347 -8.72001 -8.66754 -8.13234 -6.54208 -3.96361 2.77744 3.09665 3.11528 3.20562 3.26082 3.51937 3.69458 3.70828 4.09588 4.51190 4.61474 4.64130 4.82057 4.84576 4.85983 4.93256 5.00813 5.12376 5.14290 5.18684 5.29418 5.40878 5.47284 5.54720 5.59760 5.73172 5.78377 5.88364 5.92942 6.04014 6.61303 6.62349 6.64127 6.79912 7.43365 7.76082 7.89087 8.38783 8.43266 9.01716 9.36190 9.83922 10.62628 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.051994 B = 0.002324 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.390304 B =12047.779126 C =12436.254976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.707 5.707 14 C 0.512 3.488 15 O -0.553 6.553 16 C -0.136 4.136 17 C 0.072 3.928 18 N -0.539 5.539 19 C 0.011 3.989 20 C 0.064 3.936 21 O -0.388 6.388 22 C 0.064 3.936 23 C 0.018 3.982 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.412 0.588 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.774 -21.491 -0.303 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.485 6.485 12 C -0.019 4.019 13 N -0.361 5.361 14 C 0.298 3.702 15 O -0.432 6.432 16 C -0.176 4.176 17 C -0.055 4.055 18 N -0.264 5.264 19 C -0.117 4.117 20 C -0.013 4.013 21 O -0.306 6.306 22 C -0.013 4.013 23 C -0.110 4.110 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.249 0.751 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.922 -21.525 -0.035 22.081 hybrid contribution -0.453 1.240 -0.497 1.411 sum 4.469 -20.285 -0.532 20.778 Atomic orbital electron populations 1.69611 1.06030 1.28570 1.49234 1.25338 0.95677 0.99977 0.96750 0.85803 0.79231 0.80440 0.78506 1.20247 1.20778 1.19296 1.19733 0.93467 0.81990 1.48310 0.87659 1.41803 1.09495 1.04503 1.62545 1.19746 0.88297 0.85004 0.85659 1.90496 1.13704 1.86831 1.57424 1.20951 0.91932 0.85858 1.03204 1.45733 1.11637 1.04698 1.74004 1.20512 0.89587 0.83900 0.76231 1.90690 1.16980 1.84995 1.50536 1.21586 0.98482 0.92401 1.05161 1.21812 0.92822 0.88234 1.02675 1.62184 1.26849 1.03303 1.34096 1.22886 0.97333 1.00507 0.90994 1.22677 0.93631 0.83183 1.01838 1.87983 1.65878 1.35123 1.41652 1.22667 0.93167 0.98225 0.87248 1.22775 0.96426 0.89644 1.02185 0.91557 0.77030 0.89904 0.89859 0.75055 0.88937 0.87877 0.89625 0.93656 0.93746 0.89155 0.92129 0.88423 0.92174 0.88470 0.89392 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 13.05 55.50 0.72 -23.04 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.31 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.52 5.29 -10.96 -0.06 -13.58 16 10 C 0.43 9.69 7.85 -10.99 -0.09 9.61 16 11 O -0.60 -15.12 15.24 5.54 0.08 -15.03 16 12 C 0.11 1.97 6.15 -5.20 -0.03 1.93 16 13 N -0.71 -11.32 5.53 -61.47 -0.34 -11.66 16 14 C 0.51 7.59 7.83 -10.98 -0.09 7.51 16 15 O -0.55 -9.94 15.98 5.55 0.09 -9.85 16 16 C -0.14 -1.45 5.64 -27.88 -0.16 -1.61 16 17 C 0.07 0.77 4.25 -3.83 -0.02 0.75 16 18 N -0.54 -5.04 4.73 -234.31 -1.11 -6.15 16 19 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 20 C 0.06 0.50 7.01 37.21 0.26 0.76 16 21 O -0.39 -3.74 10.83 -35.23 -0.38 -4.12 16 22 C 0.06 0.49 7.01 37.21 0.26 0.75 16 23 C 0.02 0.15 5.64 -3.71 -0.02 0.13 16 24 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 26 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.41 6.43 7.44 -40.82 -0.30 6.12 16 29 H 0.09 0.85 6.52 -51.93 -0.34 0.51 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.96 8.00 -51.93 -0.42 0.55 16 32 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.68 6.38 -51.93 -0.33 0.35 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 LS Contribution 334.65 15.07 5.04 5.04 Total: -1.00 -31.61 334.65 -6.97 -38.59 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.87 Total: 12.36 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -0.14 Total: 12.07 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.78 Total: -54.44 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.21 Total: -29.00 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.61 -6.97 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322790757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.990 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds