Wall clock time and date at job start Tue Mar 31 2020 03:08:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.46948 * 2 1
4 4 O 1.42896 * 109.47452 * 239.99755 * 2 1 3
5 5 C 1.53005 * 109.46882 * 119.99676 * 2 1 3
6 6 N 1.46499 * 109.46731 * 184.99995 * 5 2 1
7 7 C 1.34774 * 119.99893 * 90.00624 * 6 5 2
8 8 O 1.21591 * 119.99896 * 186.01092 * 7 6 5
9 9 N 1.34772 * 119.99966 * 6.01395 * 7 6 5
10 10 C 1.46507 * 119.99946 * 175.19730 * 9 7 6
11 11 C 1.50707 * 109.47066 * 179.71943 * 10 9 7
12 12 O 1.21296 * 119.99753 * 0.02562 * 11 10 9
13 13 N 1.34770 * 119.99739 * 179.97438 * 11 10 9
14 14 C 1.37102 * 119.99647 * 180.02562 * 13 11 10
15 15 H 1.08001 * 120.00250 * 0.02562 * 14 13 11
16 16 C 1.38952 * 119.99818 * 180.02562 * 14 13 11
17 17 N 1.31417 * 119.99999 * 359.97438 * 16 14 13
18 18 Si 1.86796 * 120.00003 * 179.97438 * 16 14 13
19 19 H 1.48507 * 109.47186 * 59.99885 * 18 16 14
20 20 H 1.48502 * 109.47393 * 179.97438 * 18 16 14
21 21 H 1.48500 * 109.47336 * 299.99762 * 18 16 14
22 22 C 1.46504 * 120.00199 * 269.99835 * 6 5 2
23 23 C 1.52999 * 117.49852 * 196.46531 * 22 6 5
24 24 C 1.52998 * 117.49745 * 127.84220 * 22 6 5
25 25 H 1.09000 * 109.47472 * 299.99740 * 1 2 3
26 26 H 1.08998 * 109.47265 * 60.00371 * 1 2 3
27 27 H 1.09000 * 109.46948 * 179.97438 * 1 2 3
28 28 H 0.96694 * 114.00114 * 300.00489 * 4 2 1
29 29 H 1.09001 * 109.46910 * 65.00236 * 5 2 1
30 30 H 1.08998 * 109.47539 * 305.00445 * 5 2 1
31 31 H 0.96997 * 120.00217 * 354.91812 * 9 7 6
32 32 H 1.08991 * 109.46971 * 299.71973 * 10 9 7
33 33 H 1.09001 * 109.47243 * 59.72247 * 10 9 7
34 34 H 0.97002 * 120.00613 * 0.02562 * 13 11 10
35 35 H 0.96996 * 119.99563 * 179.97438 * 17 16 14
36 36 H 1.08997 * 115.55068 * 342.17931 * 22 6 5
37 37 H 1.08996 * 117.50345 * 0.02562 * 23 22 6
38 38 H 1.08995 * 117.49546 * 145.02685 * 23 22 6
39 39 H 1.08996 * 117.50190 * 214.98205 * 24 22 6
40 40 H 1.09006 * 117.49639 * 359.97438 * 24 22 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0064 -0.6737 -1.1667
5 6 2.0399 -0.7212 1.2493
6 7 3.5000 -0.6178 1.3110
7 6 4.0756 0.4197 1.9502
8 8 5.2821 0.5656 1.9088
9 7 3.3141 1.2956 2.6352
10 6 3.9464 2.3617 3.4163
11 6 2.8819 3.2007 4.0751
12 8 1.7103 2.9340 3.9089
13 7 3.2317 4.2466 4.8497
14 6 2.2633 5.0096 5.4495
15 1 1.2201 4.7722 5.3016
16 6 2.6240 6.0883 6.2477
17 7 3.8933 6.3768 6.4281
18 14 1.3046 7.1282 7.0643
19 1 0.4870 6.2743 7.9631
20 1 1.9454 8.2085 7.8565
21 1 0.4322 7.7283 6.0231
22 6 4.3343 -1.6423 0.6781
23 6 5.8069 -1.7066 1.0882
24 6 5.4197 -1.1697 -0.2912
25 1 -0.3634 0.5138 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 1.7210 -1.5952 -1.2328
29 1 1.7516 -1.7715 1.2057
30 1 1.6053 -0.2618 2.1370
31 1 2.3472 1.2226 2.6078
32 1 4.5866 1.9212 4.1805
33 1 4.5464 2.9885 2.7566
34 1 4.1687 4.4596 4.9829
35 1 4.1450 7.1300 6.9850
36 1 3.8329 -2.5833 0.4521
37 1 6.1549 -0.9871 1.8292
38 1 6.2745 -2.6902 1.1322
39 1 5.6326 -1.8000 -1.1546
40 1 5.5127 -0.0966 -0.4583
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001326744845.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:08:03
Heat of formation + Delta-G solvation = -74.595012 kcal
Electronic energy + Delta-G solvation = -23057.169405 eV
Core-core repulsion = 19487.697029 eV
Total energy + Delta-G solvation = -3569.472376 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.56176 -38.42661 -37.78448 -36.48492 -34.66506 -34.09444 -33.09159 -31.38292
-31.05860 -27.64265 -26.28281 -24.59659 -22.66547 -22.20300 -21.94165 -19.88726
-19.48431 -18.18455 -17.86248 -16.78552 -16.34259 -15.78389 -15.50274 -15.41196
-14.95426 -14.62893 -14.55411 -14.25291 -13.95174 -13.67552 -13.35053 -13.04905
-12.62393 -12.33907 -12.13924 -12.06312 -11.93623 -11.64141 -11.53795 -11.18314
-11.09382 -10.89142 -10.51770 -10.42937 -10.32207 -10.20214 -9.63801 -9.53743
-8.78837 -8.64208 -8.20367 -8.10861 -6.52270 -3.94492 2.62788 3.12637
3.20821 3.24125 3.25027 3.73549 3.87102 4.08755 4.15711 4.18394
4.60255 4.76702 4.86658 4.90659 4.97481 5.05950 5.15084 5.16379
5.21826 5.40548 5.50859 5.59859 5.85501 5.87703 5.90153 5.93348
5.99708 6.06923 6.15860 6.48415 6.68346 6.90086 7.00382 7.44752
7.46428 7.91080 8.13146 8.43925 8.77284 9.03384 9.38336 9.86020
10.64522
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.023312 B = 0.003715 C = 0.003290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1200.816825 B = 7535.446883 C = 8508.852994
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.083 3.917
3 H 0.101 0.899
4 O -0.552 6.552
5 C 0.080 3.920
6 N -0.597 5.597
7 C 0.707 3.293
8 O -0.585 6.585
9 N -0.725 5.725
10 C 0.127 3.873
11 C 0.428 3.572
12 O -0.600 6.600
13 N -0.548 5.548
14 C -0.306 4.306
15 H 0.105 0.895
16 C 0.027 3.973
17 N -0.894 5.894
18 Si 0.934 3.066
19 H -0.273 1.273
20 H -0.283 1.283
21 H -0.272 1.272
22 C 0.097 3.903
23 C -0.197 4.197
24 C -0.178 4.178
25 H 0.073 0.927
26 H 0.067 0.933
27 H 0.058 0.942
28 H 0.368 0.632
29 H 0.084 0.916
30 H 0.089 0.911
31 H 0.405 0.595
32 H 0.081 0.919
33 H 0.083 0.917
34 H 0.396 0.604
35 H 0.275 0.725
36 H 0.122 0.878
37 H 0.139 0.861
38 H 0.083 0.917
39 H 0.088 0.912
40 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.117 -15.407 -10.711 18.883
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C 0.023 3.977
3 H 0.119 0.881
4 O -0.356 6.356
5 C -0.044 4.044
6 N -0.332 5.332
7 C 0.409 3.591
8 O -0.464 6.464
9 N -0.384 5.384
10 C -0.002 4.002
11 C 0.214 3.786
12 O -0.487 6.487
13 N -0.182 5.182
14 C -0.436 4.436
15 H 0.123 0.877
16 C -0.176 4.176
17 N -0.534 5.534
18 Si 0.760 3.240
19 H -0.198 1.198
20 H -0.208 1.208
21 H -0.198 1.198
22 C -0.008 4.008
23 C -0.235 4.235
24 C -0.217 4.217
25 H 0.092 0.908
26 H 0.086 0.914
27 H 0.078 0.922
28 H 0.214 0.786
29 H 0.102 0.898
30 H 0.107 0.893
31 H 0.244 0.756
32 H 0.099 0.901
33 H 0.101 0.899
34 H 0.230 0.770
35 H 0.085 0.915
36 H 0.140 0.860
37 H 0.156 0.844
38 H 0.102 0.898
39 H 0.107 0.893
40 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -1.660 -14.694 -10.773 18.295
hybrid contribution -0.860 0.168 0.642 1.087
sum -2.521 -14.526 -10.131 17.888
Atomic orbital electron populations
1.22465 0.95625 1.02565 1.03684 1.22437 0.93093 0.97424 0.84764
0.88091 1.86674 1.77068 1.28392 1.43454 1.22342 0.80537 1.02152
0.99366 1.46293 1.05276 1.24315 1.57277 1.15848 0.85162 0.79539
0.78538 1.90745 1.12409 1.75621 1.67655 1.45021 1.10666 1.31126
1.51604 1.20799 0.94981 0.89080 0.95301 1.19747 0.89379 0.84482
0.84989 1.90477 1.19092 1.72513 1.66588 1.41779 1.10138 1.24950
1.41377 1.19677 0.90397 1.08021 1.25463 0.87739 1.25324 0.97164
0.97742 0.97417 1.69609 1.15571 1.29467 1.38774 0.85875 0.79977
0.78992 0.79128 1.19786 1.20839 1.19773 1.21307 0.87135 0.91064
1.01333 1.23914 0.95958 1.03019 1.00602 1.23156 1.03350 1.02145
0.93077 0.90771 0.91434 0.92249 0.78607 0.89781 0.89256 0.75603
0.90058 0.89916 0.76996 0.91513 0.86015 0.84383 0.89828 0.89317
0.88578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.53 9.53 37.16 0.35 -1.18 16
2 C 0.08 0.84 3.83 -26.73 -0.10 0.74 16
3 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16
4 O -0.55 -5.56 12.90 -35.23 -0.45 -6.01 16
5 C 0.08 0.80 4.97 -4.04 -0.02 0.78 16
6 N -0.60 -7.76 2.80 -171.80 -0.48 -8.24 16
7 C 0.71 11.75 8.07 -86.92 -0.70 11.05 16
8 O -0.58 -11.10 12.09 5.29 0.06 -11.04 16
9 N -0.73 -12.36 5.40 -66.41 -0.36 -12.72 16
10 C 0.13 2.36 6.16 -5.19 -0.03 2.33 16
11 C 0.43 9.76 7.85 -10.98 -0.09 9.67 16
12 O -0.60 -15.07 15.24 5.54 0.08 -14.98 16
13 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 16
14 C -0.31 -8.26 9.68 -14.93 -0.14 -8.41 16
15 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16
16 C 0.03 0.69 5.50 -17.46 -0.10 0.59 16
17 N -0.89 -23.79 13.05 55.50 0.72 -23.07 16
18 Si 0.93 20.41 29.55 -169.99 -5.02 15.38 16
19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16
20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16
22 C 0.10 1.12 6.22 -67.93 -0.42 0.69 16
23 C -0.20 -2.52 9.63 -26.73 -0.26 -2.77 16
24 C -0.18 -2.23 9.87 -26.73 -0.26 -2.49 16
25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
28 H 0.37 2.18 9.04 45.56 0.41 2.59 16
29 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16
30 H 0.09 0.95 6.21 -51.93 -0.32 0.62 16
31 H 0.40 6.70 5.12 -40.82 -0.21 6.49 16
32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16
33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16
34 H 0.40 9.43 7.90 -40.82 -0.32 9.11 16
35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16
36 H 0.12 1.03 8.09 -51.93 -0.42 0.61 16
37 H 0.14 2.23 5.22 -52.11 -0.27 1.95 16
38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16
39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
40 H 0.10 1.48 7.59 -51.93 -0.39 1.09 16
LS Contribution 336.76 15.07 5.07 5.07
Total: -1.00 -31.73 336.76 -7.04 -38.77
By element:
Atomic # 1 Polarization: 24.23 SS G_CDS: -4.84 Total: 19.39 kcal
Atomic # 6 Polarization: 12.79 SS G_CDS: -1.77 Total: 11.01 kcal
Atomic # 7 Polarization: -57.43 SS G_CDS: -0.17 Total: -57.60 kcal
Atomic # 8 Polarization: -31.73 SS G_CDS: -0.31 Total: -32.03 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal
Total LS contribution 5.07 Total: 5.07 kcal
Total: -31.73 -7.04 -38.77 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001326744845.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.825 kcal
(2) G-P(sol) polarization free energy of solvation -31.732 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.557 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.595 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds