Wall clock time and date at job start Tue Mar 31 2020 03:08:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.46948 * 2 1
4 4 O 1.42896 * 109.47452 * 239.99755 * 2 1 3
5 5 C 1.53005 * 109.46882 * 119.99676 * 2 1 3
6 6 N 1.46499 * 109.46731 * 184.99995 * 5 2 1
7 7 C 1.34774 * 119.99893 * 90.00624 * 6 5 2
8 8 O 1.21591 * 119.99896 * 186.01092 * 7 6 5
9 9 N 1.34772 * 119.99966 * 6.01395 * 7 6 5
10 10 C 1.46507 * 119.99946 * 175.19730 * 9 7 6
11 11 C 1.50707 * 109.47066 * 179.71943 * 10 9 7
12 12 O 1.21296 * 119.99753 * 0.02562 * 11 10 9
13 13 N 1.34770 * 119.99739 * 179.97438 * 11 10 9
14 14 C 1.37102 * 119.99647 * 180.02562 * 13 11 10
15 15 H 1.08001 * 120.00250 * 0.02562 * 14 13 11
16 16 C 1.38952 * 119.99818 * 180.02562 * 14 13 11
17 17 N 1.31417 * 119.99999 * 359.97438 * 16 14 13
18 18 Si 1.86796 * 120.00003 * 179.97438 * 16 14 13
19 19 H 1.48507 * 109.47186 * 59.99885 * 18 16 14
20 20 H 1.48502 * 109.47393 * 179.97438 * 18 16 14
21 21 H 1.48500 * 109.47336 * 299.99762 * 18 16 14
22 22 C 1.46504 * 120.00199 * 269.99835 * 6 5 2
23 23 C 1.52999 * 117.49852 * 196.46531 * 22 6 5
24 24 C 1.52998 * 117.49745 * 127.84220 * 22 6 5
25 25 H 1.09000 * 109.47472 * 299.99740 * 1 2 3
26 26 H 1.08998 * 109.47265 * 60.00371 * 1 2 3
27 27 H 1.09000 * 109.46948 * 179.97438 * 1 2 3
28 28 H 0.96694 * 114.00114 * 300.00489 * 4 2 1
29 29 H 1.09001 * 109.46910 * 65.00236 * 5 2 1
30 30 H 1.08998 * 109.47539 * 305.00445 * 5 2 1
31 31 H 0.96997 * 120.00217 * 354.91812 * 9 7 6
32 32 H 1.08991 * 109.46971 * 299.71973 * 10 9 7
33 33 H 1.09001 * 109.47243 * 59.72247 * 10 9 7
34 34 H 0.97002 * 120.00613 * 0.02562 * 13 11 10
35 35 H 0.96996 * 119.99563 * 179.97438 * 17 16 14
36 36 H 1.08997 * 115.55068 * 342.17931 * 22 6 5
37 37 H 1.08996 * 117.50345 * 0.02562 * 23 22 6
38 38 H 1.08995 * 117.49546 * 145.02685 * 23 22 6
39 39 H 1.08996 * 117.50190 * 214.98205 * 24 22 6
40 40 H 1.09006 * 117.49639 * 359.97438 * 24 22 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0064 -0.6737 -1.1667
5 6 2.0399 -0.7212 1.2493
6 7 3.5000 -0.6178 1.3110
7 6 4.0756 0.4197 1.9502
8 8 5.2821 0.5656 1.9088
9 7 3.3141 1.2956 2.6352
10 6 3.9464 2.3617 3.4163
11 6 2.8819 3.2007 4.0751
12 8 1.7103 2.9340 3.9089
13 7 3.2317 4.2466 4.8497
14 6 2.2633 5.0096 5.4495
15 1 1.2201 4.7722 5.3016
16 6 2.6240 6.0883 6.2477
17 7 3.8933 6.3768 6.4281
18 14 1.3046 7.1282 7.0643
19 1 0.4870 6.2743 7.9631
20 1 1.9454 8.2085 7.8565
21 1 0.4322 7.7283 6.0231
22 6 4.3343 -1.6423 0.6781
23 6 5.8069 -1.7066 1.0882
24 6 5.4197 -1.1697 -0.2912
25 1 -0.3634 0.5138 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 1.7210 -1.5952 -1.2328
29 1 1.7516 -1.7715 1.2057
30 1 1.6053 -0.2618 2.1370
31 1 2.3472 1.2226 2.6078
32 1 4.5866 1.9212 4.1805
33 1 4.5464 2.9885 2.7566
34 1 4.1687 4.4596 4.9829
35 1 4.1450 7.1300 6.9850
36 1 3.8329 -2.5833 0.4521
37 1 6.1549 -0.9871 1.8292
38 1 6.2745 -2.6902 1.1322
39 1 5.6326 -1.8000 -1.1546
40 1 5.5127 -0.0966 -0.4583
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001326744845.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:08:02
Heat of formation + Delta-G solvation = -99.656715 kcal
Electronic energy + Delta-G solvation = -23058.256162 eV
Core-core repulsion = 19487.697029 eV
Total energy + Delta-G solvation = -3570.559133 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.76634 -40.21094 -38.70249 -37.61680 -36.21532 -35.66167 -34.36346 -33.35812
-31.86993 -29.23441 -27.19898 -26.41283 -23.79837 -23.18582 -22.75816 -21.37931
-21.07029 -20.05876 -19.05850 -17.93564 -17.51302 -17.20881 -16.75954 -16.53448
-16.36838 -16.14429 -15.87082 -15.81339 -15.18721 -14.97970 -14.69444 -14.03548
-13.95371 -13.67989 -13.54129 -13.37057 -12.95614 -12.90421 -12.77988 -12.50201
-12.47179 -12.16469 -12.13386 -11.72390 -11.56396 -11.26276 -11.08444 -10.82326
-10.56607 -10.19539 -10.08923 -9.24324 -8.51133 -6.01640 1.37889 1.41533
1.47798 1.55224 1.87803 1.99612 2.27395 2.72678 3.11183 3.15416
3.16296 3.48121 3.80411 3.93920 4.06897 4.13942 4.16876 4.21740
4.26443 4.40788 4.43399 4.43527 4.63543 4.71509 4.88309 4.91811
5.08474 5.13348 5.27453 5.33314 5.38068 5.51946 5.77111 5.85801
5.91620 6.47014 6.85370 6.96801 7.02606 7.41007 7.50359 7.92946
8.65601
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.023312 B = 0.003715 C = 0.003290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1200.816825 B = 7535.446883 C = 8508.852994
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.091 3.909
3 H 0.063 0.937
4 O -0.566 6.566
5 C 0.078 3.922
6 N -0.593 5.593
7 C 0.700 3.300
8 O -0.613 6.613
9 N -0.726 5.726
10 C 0.140 3.860
11 C 0.434 3.566
12 O -0.623 6.623
13 N -0.558 5.558
14 C -0.338 4.338
15 H 0.088 0.912
16 C -0.010 4.010
17 N -0.917 5.917
18 Si 0.997 3.003
19 H -0.269 1.269
20 H -0.272 1.272
21 H -0.270 1.270
22 C 0.103 3.897
23 C -0.206 4.206
24 C -0.182 4.182
25 H 0.065 0.935
26 H 0.061 0.939
27 H 0.088 0.912
28 H 0.389 0.611
29 H 0.126 0.874
30 H 0.081 0.919
31 H 0.407 0.593
32 H 0.092 0.908
33 H 0.087 0.913
34 H 0.398 0.602
35 H 0.280 0.720
36 H 0.168 0.832
37 H 0.102 0.898
38 H 0.111 0.889
39 H 0.116 0.884
40 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.175 -17.266 -11.178 20.812
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C 0.030 3.970
3 H 0.081 0.919
4 O -0.374 6.374
5 C -0.045 4.045
6 N -0.326 5.326
7 C 0.401 3.599
8 O -0.495 6.495
9 N -0.386 5.386
10 C 0.012 3.988
11 C 0.221 3.779
12 O -0.511 6.511
13 N -0.193 5.193
14 C -0.467 4.467
15 H 0.106 0.894
16 C -0.211 4.211
17 N -0.556 5.556
18 Si 0.820 3.180
19 H -0.194 1.194
20 H -0.197 1.197
21 H -0.195 1.195
22 C -0.001 4.001
23 C -0.244 4.244
24 C -0.221 4.221
25 H 0.084 0.916
26 H 0.080 0.920
27 H 0.107 0.893
28 H 0.238 0.762
29 H 0.144 0.856
30 H 0.100 0.900
31 H 0.247 0.753
32 H 0.110 0.890
33 H 0.105 0.895
34 H 0.232 0.768
35 H 0.089 0.911
36 H 0.185 0.815
37 H 0.120 0.880
38 H 0.129 0.871
39 H 0.134 0.866
40 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -2.730 -16.596 -11.266 20.243
hybrid contribution -0.501 0.675 0.706 1.098
sum -3.230 -15.920 -10.560 19.375
Atomic orbital electron populations
1.22390 0.93998 1.04256 1.02968 1.22197 0.94149 0.95666 0.84990
0.91917 1.86639 1.77402 1.30157 1.43162 1.22575 0.78405 1.04653
0.98855 1.46430 1.06834 1.23254 1.56049 1.16079 0.84803 0.80196
0.78772 1.90758 1.13652 1.76448 1.68647 1.44957 1.10755 1.31034
1.51843 1.20578 0.93564 0.89127 0.95546 1.20352 0.89860 0.83879
0.83832 1.90452 1.20528 1.73002 1.67089 1.41828 1.09922 1.25537
1.42060 1.19720 0.90203 1.09563 1.27247 0.89422 1.26141 0.99323
0.98263 0.97348 1.69682 1.16969 1.29930 1.39070 0.84924 0.77426
0.77457 0.78160 1.19359 1.19689 1.19474 1.21782 0.86794 0.91809
0.99730 1.23789 0.97483 1.03396 0.99720 1.23089 1.04539 1.00366
0.94061 0.91636 0.92006 0.89335 0.76200 0.85557 0.90038 0.75314
0.89014 0.89493 0.76752 0.91059 0.81477 0.88044 0.87109 0.86622
0.92371
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.61 9.53 71.98 0.69 -1.92 16
2 C 0.09 1.71 3.83 30.60 0.12 1.83 16
3 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
4 O -0.57 -10.06 12.90 -148.98 -1.92 -11.98 16
5 C 0.08 1.37 4.97 86.38 0.43 1.80 16
6 N -0.59 -14.55 2.80 -815.72 -2.29 -16.84 16
7 C 0.70 23.34 8.07 179.06 1.44 24.79 16
8 O -0.61 -23.89 12.09 -4.00 -0.05 -23.94 16
9 N -0.73 -25.05 5.40 -482.29 -2.60 -27.65 16
10 C 0.14 5.33 6.16 85.63 0.53 5.86 16
11 C 0.43 20.17 7.85 87.66 0.69 20.86 16
12 O -0.62 -31.88 15.24 -3.08 -0.05 -31.92 16
13 N -0.56 -28.18 5.29 -306.97 -1.62 -29.81 16
14 C -0.34 -18.59 9.68 84.04 0.81 -17.78 16
15 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16
16 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16
17 N -0.92 -48.86 13.05 21.66 0.28 -48.58 16
18 Si 1.00 41.58 29.55 68.60 2.03 43.60 16
19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16
20 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16
21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16
22 C 0.10 2.11 6.22 44.99 0.28 2.39 16
23 C -0.21 -4.99 9.63 30.59 0.29 -4.70 16
24 C -0.18 -4.31 9.87 30.59 0.30 -4.01 16
25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16
28 H 0.39 3.07 9.04 -74.06 -0.67 2.40 16
29 H 0.13 1.20 8.03 -2.39 -0.02 1.18 16
30 H 0.08 1.61 6.21 -2.39 -0.01 1.60 16
31 H 0.41 13.64 5.12 -92.71 -0.47 13.16 16
32 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16
33 H 0.09 3.24 8.14 -2.39 -0.02 3.23 16
34 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16
35 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16
36 H 0.17 1.94 8.09 -2.39 -0.02 1.92 16
37 H 0.10 3.33 5.22 -5.17 -0.03 3.30 16
38 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16
39 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16
40 H 0.06 1.84 7.59 -2.38 -0.02 1.82 16
Total: -1.00 -70.43 336.76 -0.97 -71.40
By element:
Atomic # 1 Polarization: 47.45 SS G_CDS: -0.80 Total: 46.65 kcal
Atomic # 6 Polarization: 23.01 SS G_CDS: 6.05 Total: 29.06 kcal
Atomic # 7 Polarization: -116.65 SS G_CDS: -6.23 Total: -122.88 kcal
Atomic # 8 Polarization: -65.83 SS G_CDS: -2.02 Total: -67.84 kcal
Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal
Total: -70.43 -0.97 -71.40 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001326744845.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.256 kcal
(2) G-P(sol) polarization free energy of solvation -70.430 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.686 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.401 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.657 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds