Wall clock time and date at job start Tue Mar 31 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00481 * 2 1 4 4 H 1.48497 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47086 * 299.99888 * 3 2 1 6 6 H 1.48507 * 109.46968 * 59.99554 * 3 2 1 7 7 C 1.38951 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00190 * 180.02562 * 7 2 1 9 9 N 1.37103 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00071 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99810 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99760 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47173 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00271 * 180.02562 * 13 12 10 15 15 O 1.21578 * 119.99874 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99740 * 180.02562 * 14 13 12 17 17 C 1.46504 * 119.99920 * 179.97438 * 16 14 13 18 18 H 1.09003 * 108.95875 * 326.20474 * 17 16 14 19 19 C 1.54195 * 108.97824 * 207.48188 * 17 16 14 20 20 C 1.50628 * 109.06316 * 161.81920 * 19 17 16 21 21 C 1.53815 * 112.46509 * 90.32970 * 20 19 17 22 22 O 1.44126 * 113.51923 * 317.79888 * 21 20 19 23 23 C 1.40327 * 116.49623 * 318.14410 * 22 21 20 24 24 C 1.46287 * 108.97723 * 84.99415 * 17 16 14 25 25 H 0.97001 * 119.99755 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99885 * 0.02562 * 9 7 2 27 27 H 1.09005 * 109.47403 * 60.00609 * 12 10 9 28 28 H 1.08993 * 109.47736 * 299.99963 * 12 10 9 29 29 H 0.97011 * 120.00007 * 0.02562 * 13 12 10 30 30 H 0.96997 * 120.00592 * 359.97438 * 16 14 13 31 31 H 1.08997 * 109.53677 * 281.69114 * 19 17 16 32 32 H 1.08993 * 109.54079 * 41.86163 * 19 17 16 33 33 H 1.09000 * 108.88314 * 211.09480 * 20 19 17 34 34 H 1.08997 * 108.88162 * 329.65859 * 20 19 17 35 35 H 1.09005 * 108.69856 * 78.90007 * 21 20 19 36 36 H 1.08999 * 108.69693 * 197.00091 * 21 20 19 37 37 H 1.09002 * 109.59785 * 335.00406 * 23 22 21 38 38 H 1.09003 * 109.59884 * 214.69667 * 23 22 21 39 39 H 1.09004 * 108.93116 * 61.36642 * 24 17 16 40 40 H 1.08994 * 108.94240 * 302.76941 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2435 -4.8629 0.0000 13 7 2.1954 -5.9766 0.0007 14 6 1.7461 -7.2472 -0.0002 15 8 0.5508 -7.4693 -0.0020 16 7 2.6219 -8.2716 0.0010 17 6 2.1335 -9.6529 0.0006 18 1 1.2071 -9.7011 0.5730 19 6 3.1852 -10.5568 0.6749 20 6 2.5329 -11.8526 1.0801 21 6 2.6142 -12.9216 -0.0229 22 8 2.3524 -12.4066 -1.3433 23 6 1.2949 -11.4917 -1.4602 24 6 1.8628 -10.0613 -1.3777 25 1 -0.4850 0.8401 -0.0004 26 1 0.3532 -2.3907 -0.0002 27 1 0.6172 -4.9205 -0.8904 28 1 0.6165 -4.9209 0.8896 29 1 3.1492 -5.7994 0.0018 30 1 3.5756 -8.0945 0.0021 31 1 3.9947 -10.7597 -0.0262 32 1 3.5840 -10.0565 1.5573 33 1 3.0265 -12.2312 1.9752 34 1 1.4843 -11.6632 1.3093 35 1 3.6115 -13.3614 -0.0105 36 1 1.8858 -13.7031 0.1936 37 1 0.5834 -11.6498 -0.6497 38 1 0.7945 -11.6317 -2.4184 39 1 2.7902 -10.0155 -1.9488 40 1 1.1443 -9.3695 -1.8171 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326917700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:36 Heat of formation + Delta-G solvation = -119.621475 kcal Electronic energy + Delta-G solvation = -22305.225484 eV Core-core repulsion = 18733.800614 eV Total energy + Delta-G solvation = -3571.424870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41597 -39.21909 -38.16844 -35.97725 -34.38665 -33.64841 -33.23031 -31.77492 -31.33200 -27.75991 -26.74670 -25.46350 -24.30318 -21.35995 -20.95720 -20.49970 -19.58354 -18.40592 -17.95063 -17.23158 -16.61916 -15.84338 -15.63329 -15.56199 -15.25470 -14.64105 -14.58848 -14.24680 -14.02332 -13.75612 -13.63731 -13.47795 -13.08279 -12.60976 -12.17696 -12.02164 -11.75145 -11.70712 -11.63092 -11.16781 -11.11816 -10.92612 -10.70426 -10.40967 -10.32700 -10.05473 -9.80546 -9.64538 -9.14024 -8.62299 -8.60201 -8.09778 -6.51337 -3.93278 2.79936 3.10267 3.22493 3.29304 3.40699 3.54773 3.75560 4.08812 4.25817 4.39636 4.46838 4.69402 4.71660 4.90471 4.97543 4.99820 5.17487 5.21653 5.24886 5.30357 5.41504 5.54803 5.63571 5.80288 5.85156 5.89378 5.96797 6.01111 6.08807 6.14327 6.56439 6.76476 7.06425 7.13820 7.46413 7.92979 8.25235 8.45503 8.80701 9.05024 9.39936 9.87776 10.65702 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.054893 B = 0.002526 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.956305 B =11083.191083 C =11267.175490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.705 3.295 15 O -0.599 6.599 16 N -0.748 5.748 17 C 0.168 3.832 18 H 0.083 0.917 19 C -0.126 4.126 20 C -0.152 4.152 21 C 0.062 3.938 22 O -0.385 6.385 23 C 0.073 3.927 24 C -0.165 4.165 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.407 0.593 30 H 0.396 0.604 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -22.289 0.708 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.185 5.185 10 C 0.215 3.785 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.478 6.478 16 N -0.403 5.403 17 C 0.063 3.937 18 H 0.101 0.899 19 C -0.164 4.164 20 C -0.190 4.190 21 C -0.014 4.014 22 O -0.304 6.304 23 C -0.005 4.005 24 C -0.204 4.204 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.244 0.756 30 H 0.230 0.770 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.938 -22.325 0.568 22.524 hybrid contribution 0.445 1.242 0.263 1.346 sum 3.383 -21.082 0.831 21.368 Atomic orbital electron populations 1.69624 1.06011 1.28407 1.49454 1.25329 0.95673 0.99940 0.96846 0.85756 0.79668 0.80827 0.77823 1.19148 1.20610 1.20621 1.19774 0.93469 0.81991 1.48110 0.87649 1.41800 1.09500 1.04466 1.62705 1.19772 0.88293 0.85025 0.85446 1.90490 1.13768 1.86875 1.57330 1.20777 0.91234 0.84879 1.03094 1.44791 1.11216 1.03362 1.78829 1.15880 0.85273 0.80590 0.77834 1.90889 1.14062 1.84263 1.58611 1.45244 1.09021 1.04911 1.81137 1.19819 0.97815 0.79494 0.96526 0.89873 1.21605 0.98493 0.95018 1.01246 1.21847 1.02256 0.95753 0.99190 1.22983 1.01486 0.94689 0.82291 1.87504 1.53209 1.61438 1.28259 1.22235 0.88915 0.87468 1.01911 1.21591 1.03122 0.97761 0.97956 0.91645 0.77017 0.90048 0.90065 0.75620 0.77026 0.90571 0.90690 0.90208 0.91287 0.89499 0.93145 0.92781 0.89436 0.90880 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 13.05 55.50 0.72 -23.24 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 10 C 0.43 9.89 7.85 -10.99 -0.09 9.80 16 11 O -0.60 -15.33 15.24 5.55 0.08 -15.25 16 12 C 0.13 2.41 6.15 -5.19 -0.03 2.38 16 13 N -0.72 -12.26 5.53 -66.42 -0.37 -12.62 16 14 C 0.70 11.43 8.43 -86.92 -0.73 10.69 16 15 O -0.60 -11.60 15.86 5.30 0.08 -11.51 16 16 N -0.75 -8.99 5.00 -61.22 -0.31 -9.30 16 17 C 0.17 1.78 2.04 -70.50 -0.14 1.63 16 18 H 0.08 1.02 6.96 -51.93 -0.36 0.66 16 19 C -0.13 -0.98 5.08 -27.29 -0.14 -1.12 16 20 C -0.15 -1.00 5.32 -27.49 -0.15 -1.15 16 21 C 0.06 0.42 6.66 37.58 0.25 0.67 16 22 O -0.39 -3.65 10.20 -33.70 -0.34 -3.99 16 23 C 0.07 0.65 6.37 37.74 0.24 0.89 16 24 C -0.17 -1.73 4.94 -29.34 -0.14 -1.87 16 25 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.41 6.68 7.45 -40.82 -0.30 6.38 16 30 H 0.40 3.89 8.63 -40.82 -0.35 3.54 16 31 H 0.08 0.59 7.83 -51.93 -0.41 0.18 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.48 6.83 -51.93 -0.35 0.13 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.45 6.98 -51.93 -0.36 0.09 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 40 H 0.08 1.00 7.95 -51.93 -0.41 0.58 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -32.04 330.17 -7.17 -39.21 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -5.77 Total: 15.88 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: -1.17 Total: 14.07 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.01 Total: -58.91 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.18 Total: -30.76 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.04 -7.17 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326917700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.410 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds