Wall clock time and date at job start Tue Mar 31 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00481 * 2 1 4 4 H 1.48497 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47086 * 299.99888 * 3 2 1 6 6 H 1.48507 * 109.46968 * 59.99554 * 3 2 1 7 7 C 1.38951 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00190 * 180.02562 * 7 2 1 9 9 N 1.37103 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00071 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99810 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99760 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47173 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00271 * 180.02562 * 13 12 10 15 15 O 1.21578 * 119.99874 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99740 * 180.02562 * 14 13 12 17 17 C 1.46504 * 119.99920 * 179.97438 * 16 14 13 18 18 H 1.09003 * 108.95875 * 326.20474 * 17 16 14 19 19 C 1.54195 * 108.97824 * 207.48188 * 17 16 14 20 20 C 1.50628 * 109.06316 * 161.81920 * 19 17 16 21 21 C 1.53815 * 112.46509 * 90.32970 * 20 19 17 22 22 O 1.44126 * 113.51923 * 317.79888 * 21 20 19 23 23 C 1.40327 * 116.49623 * 318.14410 * 22 21 20 24 24 C 1.46287 * 108.97723 * 84.99415 * 17 16 14 25 25 H 0.97001 * 119.99755 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99885 * 0.02562 * 9 7 2 27 27 H 1.09005 * 109.47403 * 60.00609 * 12 10 9 28 28 H 1.08993 * 109.47736 * 299.99963 * 12 10 9 29 29 H 0.97011 * 120.00007 * 0.02562 * 13 12 10 30 30 H 0.96997 * 120.00592 * 359.97438 * 16 14 13 31 31 H 1.08997 * 109.53677 * 281.69114 * 19 17 16 32 32 H 1.08993 * 109.54079 * 41.86163 * 19 17 16 33 33 H 1.09000 * 108.88314 * 211.09480 * 20 19 17 34 34 H 1.08997 * 108.88162 * 329.65859 * 20 19 17 35 35 H 1.09005 * 108.69856 * 78.90007 * 21 20 19 36 36 H 1.08999 * 108.69693 * 197.00091 * 21 20 19 37 37 H 1.09002 * 109.59785 * 335.00406 * 23 22 21 38 38 H 1.09003 * 109.59884 * 214.69667 * 23 22 21 39 39 H 1.09004 * 108.93116 * 61.36642 * 24 17 16 40 40 H 1.08994 * 108.94240 * 302.76941 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2435 -4.8629 0.0000 13 7 2.1954 -5.9766 0.0007 14 6 1.7461 -7.2472 -0.0002 15 8 0.5508 -7.4693 -0.0020 16 7 2.6219 -8.2716 0.0010 17 6 2.1335 -9.6529 0.0006 18 1 1.2071 -9.7011 0.5730 19 6 3.1852 -10.5568 0.6749 20 6 2.5329 -11.8526 1.0801 21 6 2.6142 -12.9216 -0.0229 22 8 2.3524 -12.4066 -1.3433 23 6 1.2949 -11.4917 -1.4602 24 6 1.8628 -10.0613 -1.3777 25 1 -0.4850 0.8401 -0.0004 26 1 0.3532 -2.3907 -0.0002 27 1 0.6172 -4.9205 -0.8904 28 1 0.6165 -4.9209 0.8896 29 1 3.1492 -5.7994 0.0018 30 1 3.5756 -8.0945 0.0021 31 1 3.9947 -10.7597 -0.0262 32 1 3.5840 -10.0565 1.5573 33 1 3.0265 -12.2312 1.9752 34 1 1.4843 -11.6632 1.3093 35 1 3.6115 -13.3614 -0.0105 36 1 1.8858 -13.7031 0.1936 37 1 0.5834 -11.6498 -0.6497 38 1 0.7945 -11.6317 -2.4184 39 1 2.7902 -10.0155 -1.9488 40 1 1.1443 -9.3695 -1.8171 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326917700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:36 Heat of formation + Delta-G solvation = -144.862395 kcal Electronic energy + Delta-G solvation = -22306.320013 eV Core-core repulsion = 18733.800614 eV Total energy + Delta-G solvation = -3572.519398 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51824 -40.40954 -39.74915 -36.94374 -36.20245 -35.26484 -33.94921 -33.38404 -32.67398 -29.24230 -27.55271 -26.60308 -25.83223 -22.37412 -21.74599 -21.47224 -21.35377 -20.12306 -19.52718 -18.11396 -17.50622 -17.27474 -16.93625 -16.81631 -16.46175 -16.14699 -15.85197 -15.71141 -15.34134 -15.12523 -14.74561 -14.47077 -13.96464 -13.84456 -13.62368 -13.55288 -13.23828 -12.91893 -12.49605 -12.44852 -12.34402 -12.11262 -11.90801 -11.66837 -11.58166 -11.43038 -11.33623 -10.56282 -10.55327 -10.35684 -10.10385 -9.81485 -8.51394 -6.01572 1.35040 1.42503 1.54815 1.61564 1.89368 2.12036 2.28514 2.92092 3.04200 3.15896 3.30986 3.57705 3.88267 3.96955 4.10031 4.19863 4.21209 4.34352 4.43698 4.45712 4.51284 4.56419 4.67580 4.76204 4.96662 5.03285 5.10445 5.13033 5.26960 5.30011 5.33145 5.38977 5.56271 5.91428 5.96834 6.45009 6.47810 7.03339 7.03470 7.42600 7.53771 7.94152 8.65851 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.054893 B = 0.002526 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.956305 B =11083.191083 C =11267.175490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.631 6.631 16 N -0.732 5.732 17 C 0.166 3.834 18 H 0.066 0.934 19 C -0.117 4.117 20 C -0.150 4.150 21 C 0.056 3.944 22 O -0.401 6.401 23 C 0.077 3.923 24 C -0.160 4.160 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.410 0.590 30 H 0.409 0.591 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 -23.190 1.110 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.513 6.513 16 N -0.387 5.387 17 C 0.062 3.938 18 H 0.084 0.916 19 C -0.155 4.155 20 C -0.188 4.188 21 C -0.020 4.020 22 O -0.320 6.320 23 C -0.001 4.001 24 C -0.199 4.199 25 H 0.089 0.911 26 H 0.233 0.767 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.247 0.753 30 H 0.245 0.755 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.646 -23.270 0.973 23.574 hybrid contribution 0.246 1.425 0.141 1.453 sum 3.892 -21.844 1.114 22.216 Atomic orbital electron populations 1.69688 1.07020 1.29578 1.49382 1.26142 0.96550 1.02716 0.95817 0.84803 0.78121 0.76691 0.78309 1.19416 1.19639 1.19620 1.19769 0.92944 0.83515 1.50280 0.89579 1.41847 1.09607 1.04607 1.63472 1.20413 0.88108 0.85898 0.83465 1.90466 1.15177 1.87560 1.58001 1.20572 0.91015 0.83108 1.03965 1.44712 1.10977 1.03300 1.79258 1.15985 0.85250 0.80796 0.77596 1.90868 1.15634 1.84666 1.60124 1.45204 1.09245 1.04683 1.79570 1.20000 0.98215 0.78931 0.96661 0.91591 1.21559 0.97648 0.95004 1.01283 1.21843 1.02049 0.94991 0.99905 1.23180 1.02660 0.94897 0.81235 1.87483 1.53204 1.61324 1.29971 1.22181 0.88947 0.86432 1.02543 1.21521 1.02394 0.98352 0.97586 0.91067 0.76696 0.89169 0.89087 0.75257 0.75505 0.90043 0.89977 0.88096 0.91838 0.88110 0.92077 0.92196 0.88892 0.90943 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.83 13.05 21.66 0.28 -48.54 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 1.00 41.78 29.55 68.60 2.03 43.81 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.34 -18.53 9.68 84.04 0.81 -17.72 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.24 5.29 -306.99 -1.62 -29.86 16 10 C 0.43 20.13 7.85 87.66 0.69 20.82 16 11 O -0.62 -32.26 15.24 -3.06 -0.05 -32.30 16 12 C 0.14 5.28 6.15 85.63 0.53 5.81 16 13 N -0.72 -24.14 5.53 -482.31 -2.67 -26.80 16 14 C 0.70 22.48 8.43 179.05 1.51 23.99 16 15 O -0.63 -24.38 15.86 -3.96 -0.06 -24.44 16 16 N -0.73 -16.92 5.00 -465.87 -2.33 -19.25 16 17 C 0.17 3.36 2.04 43.33 0.09 3.44 16 18 H 0.07 1.60 6.96 -2.39 -0.02 1.58 16 19 C -0.12 -1.59 5.08 30.23 0.15 -1.43 16 20 C -0.15 -1.62 5.32 30.10 0.16 -1.46 16 21 C 0.06 0.64 6.66 72.26 0.48 1.12 16 22 O -0.40 -6.92 10.20 -143.49 -1.46 -8.39 16 23 C 0.08 1.31 6.37 72.36 0.46 1.77 16 24 C -0.16 -3.26 4.94 28.90 0.14 -3.12 16 25 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 26 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 27 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 28 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.41 13.23 7.45 -92.70 -0.69 12.54 16 30 H 0.41 7.44 8.63 -92.71 -0.80 6.64 16 31 H 0.08 1.06 7.83 -2.39 -0.02 1.04 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.78 6.83 -2.39 -0.02 0.76 16 35 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.94 6.98 -2.39 -0.02 0.92 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.47 8.13 -2.38 -0.02 1.45 16 40 H 0.05 1.39 7.95 -2.39 -0.02 1.37 16 Total: -1.00 -68.14 330.17 -1.52 -69.66 By element: Atomic # 1 Polarization: 44.17 SS G_CDS: -1.14 Total: 43.03 kcal Atomic # 6 Polarization: 27.59 SS G_CDS: 5.49 Total: 33.09 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -6.34 Total: -124.46 kcal Atomic # 8 Polarization: -63.56 SS G_CDS: -1.57 Total: -65.13 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -68.14 -1.52 -69.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326917700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.201 kcal (2) G-P(sol) polarization free energy of solvation -68.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds