Wall clock time and date at job start Tue Mar 31 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86808 * 120.00046 * 2 1 4 4 H 1.48501 * 109.46817 * 239.99541 * 3 2 1 5 5 H 1.48494 * 109.46850 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47146 * 119.99582 * 3 2 1 7 7 C 1.38951 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99875 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00141 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00388 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99834 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00282 * 180.02562 * 10 9 7 13 13 N 1.46510 * 109.47124 * 180.02562 * 12 10 9 14 14 C 1.34767 * 119.99820 * 179.97438 * 13 12 10 15 15 O 1.21594 * 120.00286 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99907 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00236 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47478 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47464 * 179.97438 * 18 17 16 20 20 C 1.53781 * 113.61609 * 174.99951 * 19 18 17 21 21 C 1.53781 * 87.08070 * 139.98229 * 20 19 18 22 22 O 1.42905 * 113.61505 * 219.93701 * 21 20 19 23 23 C 1.53786 * 87.17350 * 334.52830 * 21 20 19 24 24 H 0.97003 * 120.00358 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00197 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.46959 * 60.00792 * 12 10 9 27 27 H 1.08994 * 109.47227 * 300.00334 * 12 10 9 28 28 H 0.97000 * 119.99358 * 0.02562 * 13 12 10 29 29 H 0.97000 * 120.00237 * 0.02562 * 16 14 13 30 30 H 1.09008 * 109.47373 * 60.00129 * 17 16 14 31 31 H 1.08997 * 109.47285 * 300.00152 * 17 16 14 32 32 H 1.08997 * 109.47139 * 59.99772 * 18 17 16 33 33 H 1.09006 * 109.47243 * 300.00277 * 18 17 16 34 34 H 1.08996 * 112.84723 * 43.80771 * 19 18 17 35 35 H 1.08999 * 113.61181 * 25.43284 * 20 19 18 36 36 H 1.08998 * 113.61680 * 254.52836 * 20 19 18 37 37 H 1.09002 * 113.61445 * 89.11830 * 21 20 19 38 38 H 0.96696 * 114.00145 * 178.47219 * 22 21 20 39 39 H 1.08992 * 113.61675 * 140.02412 * 23 21 20 40 40 H 1.09000 * 113.60973 * 270.92699 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1957 -5.9765 0.0007 14 6 1.7465 -7.2471 0.0009 15 8 0.5510 -7.4693 -0.0001 16 7 2.6223 -8.2715 0.0021 17 6 2.1340 -9.6527 0.0017 18 6 3.3239 -10.6144 0.0026 19 6 2.8140 -12.0569 0.0029 20 6 3.9321 -13.1056 -0.1190 21 6 3.1540 -13.9402 0.9120 22 8 3.9904 -14.5877 1.8729 23 6 2.5495 -12.6178 1.4130 24 1 -0.4851 0.8400 -0.0004 25 1 0.3534 -2.3907 -0.0002 26 1 0.6175 -4.9205 -0.8903 27 1 0.6166 -4.9208 0.8896 28 1 3.1494 -5.7991 0.0018 29 1 3.5760 -8.0943 0.0032 30 1 1.5295 -9.8242 -0.8891 31 1 1.5274 -9.8239 0.8909 32 1 3.9288 -10.4431 0.8930 33 1 3.9303 -10.4431 -0.8869 34 1 1.9898 -12.2146 -0.6928 35 1 4.8994 -12.7565 0.2422 36 1 3.9893 -13.5705 -1.1033 37 1 2.4221 -14.6136 0.4659 38 1 3.5055 -15.0951 2.5380 39 1 1.4915 -12.6891 1.6648 40 1 3.1396 -12.1357 2.1924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326919849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:38 Heat of formation + Delta-G solvation = -108.448283 kcal Electronic energy + Delta-G solvation = -21335.715062 eV Core-core repulsion = 17764.774698 eV Total energy + Delta-G solvation = -3570.940364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.03553 -39.58969 -38.19125 -36.09252 -34.72876 -34.34447 -33.61746 -31.38601 -30.69664 -27.50407 -26.15649 -24.95506 -24.03931 -21.88063 -20.75430 -19.88966 -19.55731 -18.40785 -17.97961 -17.71068 -16.30356 -15.90999 -15.64776 -15.55916 -14.92783 -14.87576 -14.54186 -14.30799 -14.01534 -13.93127 -13.46279 -13.33424 -12.83667 -12.57549 -12.16044 -12.10779 -11.95195 -11.67522 -11.62005 -11.33019 -11.09836 -11.06321 -10.59965 -10.50082 -10.30740 -10.18281 -9.98627 -9.61603 -9.13707 -8.61182 -8.57242 -8.08876 -6.50192 -3.92275 2.84335 3.14517 3.22179 3.26230 3.43107 3.76709 3.77984 4.09630 4.10160 4.18131 4.33717 4.47329 4.51799 4.77857 4.91929 5.02410 5.04996 5.18425 5.21526 5.33590 5.38547 5.45078 5.54747 5.69478 5.81364 5.87640 5.95522 6.02749 6.05798 6.09986 6.53474 6.77795 7.12325 7.23296 7.46815 7.93429 8.26459 8.46599 8.82284 9.05708 9.40815 9.88872 10.66620 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.058644 B = 0.002066 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.341536 B =13550.379109 C =13788.539416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.599 6.599 16 N -0.751 5.751 17 C 0.142 3.858 18 C -0.120 4.120 19 C -0.105 4.105 20 C -0.124 4.124 21 C 0.073 3.927 22 O -0.562 6.562 23 C -0.166 4.166 24 H 0.275 0.725 25 H 0.396 0.604 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.407 0.593 29 H 0.396 0.604 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.377 0.623 39 H 0.070 0.930 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -24.440 0.933 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.403 3.597 15 O -0.478 6.478 16 N -0.407 5.407 17 C 0.017 3.983 18 C -0.158 4.158 19 C -0.124 4.124 20 C -0.162 4.162 21 C 0.014 3.986 22 O -0.368 6.368 23 C -0.204 4.204 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.244 0.756 29 H 0.230 0.770 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.224 0.776 39 H 0.089 0.911 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.957 -24.150 0.575 24.478 hybrid contribution 0.130 0.798 0.317 0.868 sum 4.087 -23.352 0.892 23.723 Atomic orbital electron populations 1.69605 1.05998 1.28614 1.49266 1.25326 0.95672 0.99923 0.96812 0.85867 0.78763 0.80160 0.79130 1.19802 1.20863 1.19793 1.19678 0.93428 0.82027 1.48370 0.87746 1.41779 1.09493 1.04439 1.62675 1.19773 0.88295 0.85028 0.85483 1.90488 1.13770 1.86882 1.57381 1.20777 0.91233 0.84858 1.03116 1.44778 1.11213 1.03363 1.78880 1.15866 0.85224 0.80587 0.77998 1.90902 1.14102 1.84325 1.58504 1.45064 1.09042 1.05280 1.81339 1.21126 0.96008 0.78907 1.02248 1.21750 0.97711 0.93213 1.03077 1.22281 0.98812 0.93519 0.97786 1.23115 0.98889 0.95750 0.98413 1.23383 0.93036 0.91684 0.90519 1.86528 1.37009 1.69637 1.43596 1.23835 1.01694 0.97437 0.97453 0.91544 0.77004 0.90034 0.90047 0.75617 0.77003 0.91783 0.91749 0.90955 0.90854 0.88492 0.89055 0.90793 0.90156 0.77560 0.91080 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 13.05 55.50 0.72 -23.25 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.60 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.31 -8.34 9.68 -14.94 -0.14 -8.49 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 9 N -0.55 -13.72 5.29 -10.96 -0.06 -13.77 16 10 C 0.43 9.93 7.85 -10.99 -0.09 9.84 16 11 O -0.60 -15.39 15.24 5.54 0.08 -15.31 16 12 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 13 N -0.72 -12.40 5.53 -66.41 -0.37 -12.77 16 14 C 0.70 11.65 8.57 -86.93 -0.74 10.91 16 15 O -0.60 -11.98 16.34 5.28 0.09 -11.89 16 16 N -0.75 -9.03 5.56 -65.23 -0.36 -9.39 16 17 C 0.14 1.43 5.66 -4.05 -0.02 1.41 16 18 C -0.12 -0.85 5.17 -26.73 -0.14 -0.98 16 19 C -0.10 -0.66 3.66 -89.67 -0.33 -0.99 16 20 C -0.12 -0.80 7.47 -25.92 -0.19 -1.00 16 21 C 0.07 0.46 5.20 -25.92 -0.13 0.32 16 22 O -0.56 -4.12 13.67 -35.23 -0.48 -4.60 16 23 C -0.17 -1.07 7.48 -25.77 -0.19 -1.26 16 24 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 26 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.41 6.71 7.45 -40.82 -0.30 6.41 16 29 H 0.40 3.80 8.49 -40.82 -0.35 3.46 16 30 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.57 8.13 -51.93 -0.42 0.15 16 35 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.38 1.20 9.12 45.56 0.42 1.61 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.66 7.90 -51.93 -0.41 0.25 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -33.55 343.49 -7.45 -40.99 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -5.11 Total: 16.50 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: -2.11 Total: 12.74 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.06 Total: -59.19 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.31 Total: -31.80 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.55 -7.45 -40.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326919849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.456 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds