Wall clock time and date at job start Tue Mar 31 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86808 * 120.00046 * 2 1 4 4 H 1.48501 * 109.46817 * 239.99541 * 3 2 1 5 5 H 1.48494 * 109.46850 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47146 * 119.99582 * 3 2 1 7 7 C 1.38951 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99875 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00141 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00388 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99834 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00282 * 180.02562 * 10 9 7 13 13 N 1.46510 * 109.47124 * 180.02562 * 12 10 9 14 14 C 1.34767 * 119.99820 * 179.97438 * 13 12 10 15 15 O 1.21594 * 120.00286 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99907 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00236 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47478 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47464 * 179.97438 * 18 17 16 20 20 C 1.53781 * 113.61609 * 174.99951 * 19 18 17 21 21 C 1.53781 * 87.08070 * 139.98229 * 20 19 18 22 22 O 1.42905 * 113.61505 * 219.93701 * 21 20 19 23 23 C 1.53786 * 87.17350 * 334.52830 * 21 20 19 24 24 H 0.97003 * 120.00358 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00197 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.46959 * 60.00792 * 12 10 9 27 27 H 1.08994 * 109.47227 * 300.00334 * 12 10 9 28 28 H 0.97000 * 119.99358 * 0.02562 * 13 12 10 29 29 H 0.97000 * 120.00237 * 0.02562 * 16 14 13 30 30 H 1.09008 * 109.47373 * 60.00129 * 17 16 14 31 31 H 1.08997 * 109.47285 * 300.00152 * 17 16 14 32 32 H 1.08997 * 109.47139 * 59.99772 * 18 17 16 33 33 H 1.09006 * 109.47243 * 300.00277 * 18 17 16 34 34 H 1.08996 * 112.84723 * 43.80771 * 19 18 17 35 35 H 1.08999 * 113.61181 * 25.43284 * 20 19 18 36 36 H 1.08998 * 113.61680 * 254.52836 * 20 19 18 37 37 H 1.09002 * 113.61445 * 89.11830 * 21 20 19 38 38 H 0.96696 * 114.00145 * 178.47219 * 22 21 20 39 39 H 1.08992 * 113.61675 * 140.02412 * 23 21 20 40 40 H 1.09000 * 113.60973 * 270.92699 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1957 -5.9765 0.0007 14 6 1.7465 -7.2471 0.0009 15 8 0.5510 -7.4693 -0.0001 16 7 2.6223 -8.2715 0.0021 17 6 2.1340 -9.6527 0.0017 18 6 3.3239 -10.6144 0.0026 19 6 2.8140 -12.0569 0.0029 20 6 3.9321 -13.1056 -0.1190 21 6 3.1540 -13.9402 0.9120 22 8 3.9904 -14.5877 1.8729 23 6 2.5495 -12.6178 1.4130 24 1 -0.4851 0.8400 -0.0004 25 1 0.3534 -2.3907 -0.0002 26 1 0.6175 -4.9205 -0.8903 27 1 0.6166 -4.9208 0.8896 28 1 3.1494 -5.7991 0.0018 29 1 3.5760 -8.0943 0.0032 30 1 1.5295 -9.8242 -0.8891 31 1 1.5274 -9.8239 0.8909 32 1 3.9288 -10.4431 0.8930 33 1 3.9303 -10.4431 -0.8869 34 1 1.9898 -12.2146 -0.6928 35 1 4.8994 -12.7565 0.2422 36 1 3.9893 -13.5705 -1.1033 37 1 2.4221 -14.6136 0.4659 38 1 3.5055 -15.0951 2.5380 39 1 1.4915 -12.6891 1.6648 40 1 3.1396 -12.1357 2.1924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326919849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:38 Heat of formation + Delta-G solvation = -136.535504 kcal Electronic energy + Delta-G solvation = -21336.933016 eV Core-core repulsion = 17764.774698 eV Total energy + Delta-G solvation = -3572.158317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.21621 -40.34660 -39.95078 -36.84104 -36.22156 -35.53019 -35.25471 -33.37095 -31.59016 -29.03994 -26.67747 -26.49774 -25.15203 -22.53878 -22.00287 -21.35697 -20.44357 -20.09391 -19.51524 -18.30339 -17.47982 -17.37189 -17.02187 -16.50159 -16.38531 -16.07962 -15.87462 -15.39565 -15.29242 -15.18154 -15.00477 -14.17137 -13.94313 -13.58850 -13.53155 -13.34751 -13.22464 -12.89617 -12.62332 -12.46355 -12.39339 -12.13183 -11.90746 -11.64000 -11.55657 -11.40717 -11.08970 -10.63203 -10.55081 -10.42221 -10.09790 -9.79537 -8.50174 -6.00554 1.38785 1.42979 1.53403 1.64100 1.90557 2.12511 2.29429 3.05146 3.16934 3.28375 3.43533 3.58110 3.68560 3.85248 4.04815 4.15783 4.22541 4.34386 4.44147 4.47082 4.47514 4.68191 4.73898 4.87101 4.89850 5.00752 5.08150 5.18721 5.31522 5.31800 5.39160 5.52144 5.55531 5.92008 5.97869 6.48776 6.92306 7.03927 7.04494 7.43429 7.54376 7.95102 8.66443 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.058644 B = 0.002066 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.341536 B =13550.379109 C =13788.539416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.702 3.298 15 O -0.634 6.634 16 N -0.734 5.734 17 C 0.141 3.859 18 C -0.109 4.109 19 C -0.101 4.101 20 C -0.126 4.126 21 C 0.072 3.928 22 O -0.583 6.583 23 C -0.167 4.167 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.410 0.590 29 H 0.410 0.590 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.393 0.607 39 H 0.074 0.926 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 -25.112 0.752 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.402 3.598 15 O -0.516 6.516 16 N -0.390 5.390 17 C 0.017 3.983 18 C -0.146 4.146 19 C -0.120 4.120 20 C -0.164 4.164 21 C 0.013 3.987 22 O -0.391 6.391 23 C -0.205 4.205 24 H 0.089 0.911 25 H 0.233 0.767 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.248 0.752 29 H 0.246 0.754 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.243 0.757 39 H 0.093 0.907 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.357 -24.868 0.402 25.250 hybrid contribution 0.022 0.905 0.391 0.986 sum 4.379 -23.963 0.793 24.373 Atomic orbital electron populations 1.69674 1.07006 1.29701 1.49188 1.26144 0.96557 1.02714 0.95783 0.84915 0.77697 0.76198 0.79089 1.19491 1.19646 1.19490 1.19708 0.92989 0.83542 1.50514 0.89528 1.41829 1.09605 1.04584 1.63430 1.20416 0.88117 0.85903 0.83519 1.90465 1.15166 1.87564 1.58049 1.20578 0.91023 0.83094 1.04007 1.44697 1.11004 1.03294 1.79251 1.15997 0.85197 0.80856 0.77779 1.90879 1.15778 1.84773 1.60186 1.45018 1.09312 1.05078 1.79612 1.21263 0.97239 0.78191 1.01585 1.21677 0.96454 0.92829 1.03686 1.22272 0.99055 0.92824 0.97888 1.23118 0.98397 0.95870 0.98993 1.23476 0.93083 0.91817 0.90317 1.86482 1.38214 1.70062 1.44385 1.23815 1.01755 0.97691 0.97243 0.91062 0.76685 0.89068 0.89123 0.75200 0.75364 0.92252 0.92637 0.90703 0.89874 0.87727 0.89975 0.89912 0.88583 0.75722 0.90722 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.74 13.05 21.66 0.28 -48.45 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.73 29.55 68.60 2.03 43.75 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.34 -18.66 9.68 84.04 0.81 -17.84 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.19 5.29 -306.99 -1.62 -29.81 16 10 C 0.43 20.10 7.85 87.66 0.69 20.79 16 11 O -0.62 -32.23 15.24 -3.08 -0.05 -32.28 16 12 C 0.14 5.27 6.15 85.63 0.53 5.80 16 13 N -0.72 -24.14 5.53 -482.29 -2.67 -26.81 16 14 C 0.70 22.53 8.57 179.06 1.53 24.07 16 15 O -0.63 -24.90 16.34 -4.01 -0.07 -24.97 16 16 N -0.73 -16.61 5.56 -478.54 -2.66 -19.27 16 17 C 0.14 2.66 5.66 86.38 0.49 3.15 16 18 C -0.11 -1.34 5.17 30.59 0.16 -1.19 16 19 C -0.10 -1.11 3.66 -10.18 -0.04 -1.15 16 20 C -0.13 -1.43 7.47 31.12 0.23 -1.19 16 21 C 0.07 0.79 5.20 31.12 0.16 0.95 16 22 O -0.58 -7.83 13.67 -148.98 -2.04 -9.87 16 23 C -0.17 -1.94 7.48 31.21 0.23 -1.70 16 24 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 25 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 26 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 27 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.41 13.18 7.45 -92.71 -0.69 12.49 16 29 H 0.41 7.12 8.49 -92.71 -0.79 6.33 16 30 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 0.92 7.85 -2.39 -0.02 0.90 16 33 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.10 1.02 8.13 -2.39 -0.02 1.00 16 35 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.39 2.03 9.12 -74.06 -0.68 1.35 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 1.11 7.90 -2.39 -0.02 1.09 16 Total: -1.00 -70.71 343.49 -3.31 -74.02 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: -1.79 Total: 42.12 kcal Atomic # 6 Polarization: 26.30 SS G_CDS: 5.27 Total: 31.56 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -6.67 Total: -124.34 kcal Atomic # 8 Polarization: -64.97 SS G_CDS: -2.15 Total: -67.12 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -70.71 -3.31 -74.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326919849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.511 kcal (2) G-P(sol) polarization free energy of solvation -70.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds