Wall clock time and date at job start Tue Mar 31 2020 03:12:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 O 1.21282 * 120.00844 * 2 1
4 4 N 1.34776 * 119.99840 * 180.02562 * 2 1 3
5 5 C 1.46507 * 120.00233 * 179.97438 * 4 2 1
6 6 C 1.52998 * 109.47239 * 180.02562 * 5 4 2
7 7 O 1.42900 * 110.87824 * 67.38575 * 6 5 4
8 8 C 1.55152 * 110.98857 * 303.54111 * 6 5 4
9 9 C 1.54319 * 103.02012 * 206.21906 * 8 6 5
10 10 N 1.47453 * 107.23098 * 22.28600 * 9 8 6
11 11 C 1.46893 * 110.99929 * 123.25740 * 10 9 8
12 12 C 1.50708 * 109.47146 * 69.87269 * 11 10 9
13 13 O 1.21288 * 119.99815 * 359.97438 * 12 11 10
14 14 N 1.34774 * 119.99719 * 180.02562 * 12 11 10
15 15 C 1.37101 * 119.99349 * 180.02562 * 14 12 11
16 16 H 1.07991 * 120.00515 * 359.97438 * 15 14 12
17 17 C 1.38955 * 119.99490 * 179.97438 * 15 14 12
18 18 N 1.31413 * 120.00236 * 359.97438 * 17 15 14
19 19 Si 1.86803 * 119.99845 * 179.97438 * 17 15 14
20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15
21 21 H 1.48502 * 109.47194 * 300.00675 * 19 17 15
22 22 H 1.48498 * 109.47018 * 60.00238 * 19 17 15
23 23 C 1.47846 * 108.56762 * 0.98600 * 10 9 8
24 24 H 1.08999 * 109.47207 * 180.02562 * 1 2 3
25 25 H 1.09007 * 109.46622 * 299.99820 * 1 2 3
26 26 H 1.08999 * 109.46993 * 59.99616 * 1 2 3
27 27 H 0.96999 * 120.00268 * 359.97438 * 4 2 1
28 28 H 1.09000 * 109.47226 * 59.99473 * 5 4 2
29 29 H 1.09000 * 109.46716 * 299.99773 * 5 4 2
30 30 H 0.96692 * 114.00043 * 297.61012 * 7 6 5
31 31 H 1.09000 * 110.69737 * 87.83717 * 8 6 5
32 32 H 1.08995 * 110.85247 * 324.67376 * 8 6 5
33 33 H 1.08997 * 109.88656 * 262.88239 * 9 8 6
34 34 H 1.08988 * 110.02346 * 141.76550 * 9 8 6
35 35 H 1.09002 * 109.47091 * 309.87440 * 11 10 9
36 36 H 1.09000 * 109.47343 * 189.87057 * 11 10 9
37 37 H 0.96996 * 120.00564 * 359.97438 * 14 12 11
38 38 H 0.97001 * 119.99781 * 179.97438 * 18 17 15
39 39 H 1.09002 * 110.37001 * 94.73357 * 23 10 9
40 40 H 1.08991 * 110.37386 * 217.07721 * 23 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1135 1.0502 0.0000
4 7 2.1808 -1.1672 -0.0005
5 6 3.6459 -1.1673 -0.0011
6 6 4.1558 -2.6098 -0.0023
7 8 3.8410 -3.2603 -1.2351
8 6 3.5869 -3.4013 1.2048
9 6 4.6528 -4.4925 1.4386
10 7 5.9123 -4.0071 0.8451
11 6 6.9884 -3.9782 1.8446
12 6 7.3779 -5.3889 2.2042
13 8 6.8142 -6.3261 1.6798
14 7 8.3520 -5.6090 3.1093
15 6 8.7067 -6.8924 3.4360
16 1 8.2054 -7.7269 2.9685
17 6 9.7114 -7.1194 4.3687
18 7 10.3218 -6.1039 4.9373
19 14 10.1943 -8.8680 4.8145
20 1 11.2825 -8.8388 5.8245
21 1 9.0171 -9.5791 5.3748
22 1 10.6674 -9.5762 3.5981
23 6 5.6782 -2.6613 0.2794
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5139 0.8901
26 1 -0.3633 0.5139 -0.8899
27 1 1.6958 -2.0073 -0.0005
28 1 4.0096 -0.6536 0.8888
29 1 4.0088 -0.6533 -0.8911
30 1 2.8928 -3.3383 -1.4077
31 1 2.6255 -3.8492 0.9532
32 1 3.4940 -2.7593 2.0807
33 1 4.3472 -5.4194 0.9532
34 1 4.7869 -4.6604 2.5071
35 1 6.6411 -3.4583 2.7375
36 1 7.8524 -3.4563 1.4332
37 1 8.8026 -4.8595 3.5289
38 1 11.0229 -6.2625 5.5887
39 1 5.9568 -1.8929 1.0006
40 1 6.2398 -2.5358 -0.6462
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001671972628.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:12:33
Heat of formation + Delta-G solvation = -112.635883 kcal
Electronic energy + Delta-G solvation = -22620.878983 eV
Core-core repulsion = 19049.757031 eV
Total energy + Delta-G solvation = -3571.121952 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.40916 -39.34459 -37.98821 -35.90136 -34.60476 -33.84126 -31.61695 -31.16261
-30.37099 -29.14048 -27.09749 -25.05999 -23.97213 -21.59559 -20.77951 -20.54128
-19.07257 -17.85097 -17.76916 -16.94862 -16.31271 -15.90947 -15.82487 -15.44368
-15.21355 -14.53928 -14.15925 -14.06212 -13.85052 -13.75045 -13.28188 -13.16030
-12.97519 -12.63780 -12.61621 -12.31257 -12.00485 -11.69395 -11.59010 -11.46823
-11.09719 -10.99341 -10.74908 -10.43048 -10.25283 -10.19956 -10.14928 -9.50778
-9.46831 -8.43034 -7.94594 -7.87620 -6.39534 -3.80256 2.28217 2.78795
3.21303 3.26745 3.31163 3.82060 3.91214 3.95118 4.20676 4.33602
4.39072 4.51590 4.57845 4.76928 4.97642 5.05388 5.14941 5.18526
5.25582 5.34180 5.44066 5.53802 5.55786 5.62396 5.77471 5.78804
5.89114 5.96948 6.02296 6.30723 6.41375 7.05071 7.21977 7.23808
7.42087 7.56937 7.83111 8.08369 8.64605 9.20529 9.57085 10.09398
10.78324
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.042971 B = 0.002826 C = 0.002786
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 651.440477 B = 9904.596117 C =10046.158536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.510 3.490
3 O -0.546 6.546
4 N -0.730 5.730
5 C 0.099 3.901
6 C 0.113 3.887
7 O -0.531 6.531
8 C -0.171 4.171
9 C 0.063 3.937
10 N -0.498 5.498
11 C 0.038 3.962
12 C 0.445 3.555
13 O -0.576 6.576
14 N -0.567 5.567
15 C -0.298 4.298
16 H 0.102 0.898
17 C 0.022 3.978
18 N -0.903 5.903
19 Si 0.930 3.070
20 H -0.285 1.285
21 H -0.274 1.274
22 H -0.273 1.273
23 C 0.060 3.940
24 H 0.076 0.924
25 H 0.095 0.905
26 H 0.095 0.905
27 H 0.399 0.601
28 H 0.079 0.921
29 H 0.080 0.920
30 H 0.369 0.631
31 H 0.076 0.924
32 H 0.076 0.924
33 H 0.085 0.915
34 H 0.056 0.944
35 H 0.049 0.951
36 H 0.089 0.911
37 H 0.392 0.608
38 H 0.272 0.728
39 H 0.061 0.939
40 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.409 11.106 -7.134 21.847
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.297 3.703
3 O -0.424 6.424
4 N -0.383 5.383
5 C -0.025 4.025
6 C 0.071 3.929
7 O -0.335 6.335
8 C -0.210 4.210
9 C -0.064 4.064
10 N -0.222 5.222
11 C -0.094 4.094
12 C 0.230 3.770
13 O -0.459 6.459
14 N -0.204 5.204
15 C -0.428 4.428
16 H 0.120 0.880
17 C -0.180 4.180
18 N -0.545 5.545
19 Si 0.758 3.242
20 H -0.210 1.210
21 H -0.200 1.200
22 H -0.199 1.199
23 C -0.068 4.068
24 H 0.095 0.905
25 H 0.113 0.887
26 H 0.114 0.886
27 H 0.234 0.766
28 H 0.097 0.903
29 H 0.098 0.902
30 H 0.216 0.784
31 H 0.095 0.905
32 H 0.095 0.905
33 H 0.103 0.897
34 H 0.075 0.925
35 H 0.067 0.933
36 H 0.107 0.893
37 H 0.225 0.775
38 H 0.081 0.919
39 H 0.079 0.921
40 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -16.355 10.845 -7.768 21.105
hybrid contribution -0.442 -0.215 1.339 1.426
sum -16.796 10.629 -6.429 20.891
Atomic orbital electron populations
1.21853 0.91493 1.04286 1.05431 1.20842 0.90665 0.83360 0.75425
1.90746 1.70779 1.31390 1.49436 1.46106 1.07353 1.08874 1.75971
1.21977 0.79942 0.96948 1.03629 1.22492 0.96459 0.89166 0.84775
1.86708 1.28290 1.80587 1.37950 1.23573 1.00141 0.98989 0.98254
1.22647 0.87281 0.97566 0.98920 1.63228 1.05499 1.20689 1.32745
1.22127 0.95675 0.97528 0.94035 1.19712 0.83964 0.89743 0.83603
1.90522 1.55959 1.44044 1.55355 1.41856 1.32650 1.08920 1.36951
1.19641 1.17254 0.84543 1.21317 0.88013 1.25253 0.96546 0.99475
0.96712 1.69605 1.25367 1.30711 1.28809 0.85924 0.78112 0.81946
0.78269 1.21008 1.19963 1.19890 1.23000 0.92100 0.91027 1.00707
0.90533 0.88654 0.88644 0.76636 0.90308 0.90177 0.78431 0.90515
0.90512 0.89718 0.92544 0.93301 0.89267 0.77534 0.91863 0.92091
0.88967
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.79 10.39 36.00 0.37 -0.41 16
2 C 0.51 4.51 7.94 -10.99 -0.09 4.42 16
3 O -0.55 -7.52 17.10 5.56 0.09 -7.43 16
4 N -0.73 -5.21 5.19 -60.29 -0.31 -5.52 16
5 C 0.10 0.91 4.98 -4.04 -0.02 0.89 16
6 C 0.11 1.16 0.95 -88.48 -0.08 1.08 16
7 O -0.53 -5.78 13.18 -35.23 -0.46 -6.25 16
8 C -0.17 -1.74 5.41 -24.90 -0.13 -1.88 16
9 C 0.06 0.98 5.65 -2.83 -0.02 0.96 16
10 N -0.50 -8.33 4.85 -232.69 -1.13 -9.46 16
11 C 0.04 0.68 5.03 -4.98 -0.03 0.65 16
12 C 0.44 10.58 7.43 -10.98 -0.08 10.50 16
13 O -0.58 -15.72 15.12 5.55 0.08 -15.64 16
14 N -0.57 -14.45 5.29 -10.96 -0.06 -14.51 16
15 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16
16 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16
17 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16
18 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16
19 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16
20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
23 C 0.06 0.77 5.89 -2.30 -0.01 0.75 16
24 H 0.08 0.17 7.91 -51.93 -0.41 -0.25 16
25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16
26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
27 H 0.40 1.74 7.20 -40.82 -0.29 1.44 16
28 H 0.08 0.78 8.00 -51.93 -0.42 0.36 16
29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
30 H 0.37 2.42 8.57 45.56 0.39 2.81 16
31 H 0.08 0.60 7.88 -51.93 -0.41 0.19 16
32 H 0.08 0.73 8.04 -51.93 -0.42 0.32 16
33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16
34 H 0.06 0.94 7.31 -51.94 -0.38 0.56 16
35 H 0.05 0.78 7.96 -51.93 -0.41 0.37 16
36 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16
37 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16
38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16
39 H 0.06 0.68 7.60 -51.93 -0.39 0.28 16
40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16
LS Contribution 336.12 15.07 5.07 5.07
Total: -1.00 -35.80 336.12 -6.46 -42.26
By element:
Atomic # 1 Polarization: 15.47 SS G_CDS: -5.11 Total: 10.36 kcal
Atomic # 6 Polarization: 9.28 SS G_CDS: -0.33 Total: 8.96 kcal
Atomic # 7 Polarization: -52.70 SS G_CDS: -0.78 Total: -53.48 kcal
Atomic # 8 Polarization: -29.03 SS G_CDS: -0.29 Total: -29.31 kcal
Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal
Total LS contribution 5.07 Total: 5.07 kcal
Total: -35.80 -6.46 -42.26 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001671972628.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.377 kcal
(2) G-P(sol) polarization free energy of solvation -35.801 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.178 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.636 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds