Wall clock time and date at job start Tue Mar 31 2020 03:12:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 O 1.21282 * 120.00844 * 2 1
4 4 N 1.34776 * 119.99840 * 180.02562 * 2 1 3
5 5 C 1.46507 * 120.00233 * 179.97438 * 4 2 1
6 6 C 1.52998 * 109.47239 * 180.02562 * 5 4 2
7 7 O 1.42900 * 110.87824 * 67.38575 * 6 5 4
8 8 C 1.55152 * 110.98857 * 303.54111 * 6 5 4
9 9 C 1.54319 * 103.02012 * 206.21906 * 8 6 5
10 10 N 1.47453 * 107.23098 * 22.28600 * 9 8 6
11 11 C 1.46893 * 110.99929 * 123.25740 * 10 9 8
12 12 C 1.50708 * 109.47146 * 69.87269 * 11 10 9
13 13 O 1.21288 * 119.99815 * 359.97438 * 12 11 10
14 14 N 1.34774 * 119.99719 * 180.02562 * 12 11 10
15 15 C 1.37101 * 119.99349 * 180.02562 * 14 12 11
16 16 H 1.07991 * 120.00515 * 359.97438 * 15 14 12
17 17 C 1.38955 * 119.99490 * 179.97438 * 15 14 12
18 18 N 1.31413 * 120.00236 * 359.97438 * 17 15 14
19 19 Si 1.86803 * 119.99845 * 179.97438 * 17 15 14
20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15
21 21 H 1.48502 * 109.47194 * 300.00675 * 19 17 15
22 22 H 1.48498 * 109.47018 * 60.00238 * 19 17 15
23 23 C 1.47846 * 108.56762 * 0.98600 * 10 9 8
24 24 H 1.08999 * 109.47207 * 180.02562 * 1 2 3
25 25 H 1.09007 * 109.46622 * 299.99820 * 1 2 3
26 26 H 1.08999 * 109.46993 * 59.99616 * 1 2 3
27 27 H 0.96999 * 120.00268 * 359.97438 * 4 2 1
28 28 H 1.09000 * 109.47226 * 59.99473 * 5 4 2
29 29 H 1.09000 * 109.46716 * 299.99773 * 5 4 2
30 30 H 0.96692 * 114.00043 * 297.61012 * 7 6 5
31 31 H 1.09000 * 110.69737 * 87.83717 * 8 6 5
32 32 H 1.08995 * 110.85247 * 324.67376 * 8 6 5
33 33 H 1.08997 * 109.88656 * 262.88239 * 9 8 6
34 34 H 1.08988 * 110.02346 * 141.76550 * 9 8 6
35 35 H 1.09002 * 109.47091 * 309.87440 * 11 10 9
36 36 H 1.09000 * 109.47343 * 189.87057 * 11 10 9
37 37 H 0.96996 * 120.00564 * 359.97438 * 14 12 11
38 38 H 0.97001 * 119.99781 * 179.97438 * 18 17 15
39 39 H 1.09002 * 110.37001 * 94.73357 * 23 10 9
40 40 H 1.08991 * 110.37386 * 217.07721 * 23 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1135 1.0502 0.0000
4 7 2.1808 -1.1672 -0.0005
5 6 3.6459 -1.1673 -0.0011
6 6 4.1558 -2.6098 -0.0023
7 8 3.8410 -3.2603 -1.2351
8 6 3.5869 -3.4013 1.2048
9 6 4.6528 -4.4925 1.4386
10 7 5.9123 -4.0071 0.8451
11 6 6.9884 -3.9782 1.8446
12 6 7.3779 -5.3889 2.2042
13 8 6.8142 -6.3261 1.6798
14 7 8.3520 -5.6090 3.1093
15 6 8.7067 -6.8924 3.4360
16 1 8.2054 -7.7269 2.9685
17 6 9.7114 -7.1194 4.3687
18 7 10.3218 -6.1039 4.9373
19 14 10.1943 -8.8680 4.8145
20 1 11.2825 -8.8388 5.8245
21 1 9.0171 -9.5791 5.3748
22 1 10.6674 -9.5762 3.5981
23 6 5.6782 -2.6613 0.2794
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5139 0.8901
26 1 -0.3633 0.5139 -0.8899
27 1 1.6958 -2.0073 -0.0005
28 1 4.0096 -0.6536 0.8888
29 1 4.0088 -0.6533 -0.8911
30 1 2.8928 -3.3383 -1.4077
31 1 2.6255 -3.8492 0.9532
32 1 3.4940 -2.7593 2.0807
33 1 4.3472 -5.4194 0.9532
34 1 4.7869 -4.6604 2.5071
35 1 6.6411 -3.4583 2.7375
36 1 7.8524 -3.4563 1.4332
37 1 8.8026 -4.8595 3.5289
38 1 11.0229 -6.2625 5.5887
39 1 5.9568 -1.8929 1.0006
40 1 6.2398 -2.5358 -0.6462
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001671972628.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:12:33
Heat of formation + Delta-G solvation = -145.258440 kcal
Electronic energy + Delta-G solvation = -22622.293604 eV
Core-core repulsion = 19049.757031 eV
Total energy + Delta-G solvation = -3572.536572 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 285.152 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.31036 -40.41089 -39.58839 -37.05770 -35.85970 -35.36366 -33.30895 -32.47457
-31.18314 -30.00321 -28.46498 -26.51628 -25.31163 -22.68707 -21.66177 -21.42395
-20.84690 -19.85101 -18.53507 -17.76911 -17.68219 -17.13549 -16.71817 -16.51796
-16.37177 -16.23014 -15.68337 -15.47795 -14.96193 -14.75116 -14.45932 -14.25168
-13.77833 -13.74355 -13.53992 -13.36319 -13.26778 -13.02817 -12.95258 -12.77820
-12.58208 -12.43077 -12.13126 -12.03145 -11.83626 -11.49104 -11.04346 -10.95969
-10.33032 -10.20324 -10.00785 -9.19545 -8.46255 -5.95041 1.39532 1.41141
1.52190 1.63008 2.06158 2.15679 2.29262 2.76512 3.04519 3.20257
3.36178 3.50018 3.59040 3.64024 3.97112 4.20411 4.21337 4.31066
4.38694 4.49953 4.51891 4.61291 4.64756 4.69043 4.72422 4.81055
4.85216 4.95105 5.10268 5.20409 5.33625 5.40619 5.87106 6.03887
6.10546 6.50568 6.61313 6.80749 7.13276 7.22616 7.56861 8.13081
8.71063
Molecular weight = 285.15amu
Principal moments of inertia in cm(-1)
A = 0.042971 B = 0.002826 C = 0.002786
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 651.440477 B = 9904.596117 C =10046.158536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.505 3.495
3 O -0.602 6.602
4 N -0.716 5.716
5 C 0.110 3.890
6 C 0.129 3.871
7 O -0.551 6.551
8 C -0.155 4.155
9 C 0.061 3.939
10 N -0.526 5.526
11 C 0.051 3.949
12 C 0.441 3.559
13 O -0.616 6.616
14 N -0.576 5.576
15 C -0.333 4.333
16 H 0.078 0.922
17 C -0.014 4.014
18 N -0.922 5.922
19 Si 0.993 3.007
20 H -0.270 1.270
21 H -0.271 1.271
22 H -0.273 1.273
23 C 0.053 3.947
24 H 0.107 0.893
25 H 0.100 0.900
26 H 0.101 0.899
27 H 0.416 0.584
28 H 0.075 0.925
29 H 0.069 0.931
30 H 0.389 0.611
31 H 0.106 0.894
32 H 0.091 0.909
33 H 0.055 0.945
34 H 0.037 0.963
35 H 0.073 0.927
36 H 0.108 0.892
37 H 0.396 0.604
38 H 0.278 0.722
39 H 0.081 0.919
40 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.827 11.655 -6.987 23.218
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.294 3.706
3 O -0.484 6.484
4 N -0.370 5.370
5 C -0.015 4.015
6 C 0.086 3.914
7 O -0.358 6.358
8 C -0.193 4.193
9 C -0.066 4.066
10 N -0.250 5.250
11 C -0.080 4.080
12 C 0.229 3.771
13 O -0.501 6.501
14 N -0.214 5.214
15 C -0.462 4.462
16 H 0.096 0.904
17 C -0.213 4.213
18 N -0.563 5.563
19 Si 0.816 3.184
20 H -0.195 1.195
21 H -0.196 1.196
22 H -0.198 1.198
23 C -0.074 4.074
24 H 0.126 0.874
25 H 0.118 0.882
26 H 0.120 0.880
27 H 0.253 0.747
28 H 0.093 0.907
29 H 0.087 0.913
30 H 0.238 0.762
31 H 0.125 0.875
32 H 0.109 0.891
33 H 0.074 0.926
34 H 0.055 0.945
35 H 0.090 0.910
36 H 0.126 0.874
37 H 0.230 0.770
38 H 0.087 0.913
39 H 0.099 0.901
40 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -17.806 11.385 -7.625 22.468
hybrid contribution -0.019 -0.407 1.232 1.297
sum -17.826 10.979 -6.393 21.890
Atomic orbital electron populations
1.21882 0.87962 1.06533 1.05925 1.21627 0.92330 0.82635 0.73995
1.90725 1.72169 1.33376 1.52111 1.45990 1.06519 1.09495 1.74960
1.21723 0.81184 0.95626 1.02974 1.22237 0.94758 0.89694 0.84671
1.86673 1.30380 1.80702 1.38086 1.23494 0.99673 0.97398 0.98755
1.22550 0.88590 0.98357 0.97136 1.63089 1.05781 1.23472 1.32672
1.21966 0.97086 0.93346 0.95628 1.20773 0.82437 0.91946 0.81988
1.90488 1.56988 1.46236 1.56437 1.41930 1.33411 1.08307 1.37704
1.19610 1.18620 0.85181 1.22809 0.90413 1.26039 0.95846 1.03476
0.95961 1.69668 1.25433 1.32333 1.28823 0.84995 0.78068 0.77175
0.78139 1.19450 1.19611 1.19805 1.23094 0.94174 0.89484 1.00675
0.87440 0.88157 0.88025 0.74670 0.90680 0.91283 0.76171 0.87548
0.89093 0.92611 0.94484 0.90958 0.87432 0.77046 0.91307 0.90052
0.89580
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.01 10.39 71.24 0.74 -0.27 16
2 C 0.50 7.88 7.94 87.66 0.70 8.58 16
3 O -0.60 -16.15 17.10 -3.04 -0.05 -16.20 16
4 N -0.72 -8.21 5.19 -463.05 -2.40 -10.61 16
5 C 0.11 1.79 4.98 86.38 0.43 2.22 16
6 C 0.13 2.37 0.95 -9.40 -0.01 2.36 16
7 O -0.55 -10.89 13.18 -148.98 -1.96 -12.85 16
8 C -0.15 -2.77 5.41 31.78 0.17 -2.60 16
9 C 0.06 1.87 5.65 86.64 0.49 2.36 16
10 N -0.53 -17.35 4.85 -890.09 -4.32 -21.67 16
11 C 0.05 1.80 5.03 85.56 0.43 2.23 16
12 C 0.44 21.48 7.43 87.66 0.65 22.13 16
13 O -0.62 -34.87 15.12 -3.05 -0.05 -34.91 16
14 N -0.58 -30.04 5.29 -306.98 -1.62 -31.66 16
15 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16
16 H 0.08 4.76 7.16 -2.92 -0.02 4.74 16
17 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16
18 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16
19 Si 0.99 43.32 29.55 68.60 2.03 45.34 16
20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16
21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
22 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16
23 C 0.05 1.29 5.89 86.77 0.51 1.80 16
24 H 0.11 -0.01 7.91 -2.39 -0.02 -0.03 16
25 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16
26 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16
27 H 0.42 2.00 7.20 -92.71 -0.67 1.33 16
28 H 0.07 1.33 8.00 -2.39 -0.02 1.31 16
29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
30 H 0.39 3.99 8.57 -74.06 -0.63 3.35 16
31 H 0.11 1.29 7.88 -2.39 -0.02 1.27 16
32 H 0.09 1.44 8.04 -2.39 -0.02 1.42 16
33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
34 H 0.04 1.24 7.31 -2.39 -0.02 1.22 16
35 H 0.07 2.22 7.96 -2.39 -0.02 2.20 16
36 H 0.11 3.39 8.07 -2.39 -0.02 3.37 16
37 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16
38 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16
39 H 0.08 1.63 7.60 -2.39 -0.02 1.61 16
40 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16
Total: -1.00 -80.46 336.12 -3.66 -84.12
By element:
Atomic # 1 Polarization: 29.13 SS G_CDS: -0.95 Total: 28.18 kcal
Atomic # 6 Polarization: 14.81 SS G_CDS: 5.39 Total: 20.20 kcal
Atomic # 7 Polarization: -105.81 SS G_CDS: -8.06 Total: -113.87 kcal
Atomic # 8 Polarization: -61.91 SS G_CDS: -2.06 Total: -63.97 kcal
Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal
Total: -80.46 -3.66 -84.12 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001671972628.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.139 kcal
(2) G-P(sol) polarization free energy of solvation -80.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.602 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.120 kcal
(6) G-S(sol) free energy of system = (1) + (5) -145.258 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds