Wall clock time and date at job start Tue Mar 31 2020 03:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.53005 * 109.46913 * 119.99702 * 2 1 3 5 5 C 1.53003 * 109.46696 * 184.99891 * 4 2 1 6 6 C 1.53005 * 109.46696 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.46904 * 180.02562 * 6 5 4 8 8 C 1.36931 * 119.99788 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 6 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 6 11 11 N 1.31614 * 119.99888 * 0.27479 * 10 8 7 12 12 Si 1.86803 * 119.99862 * 180.27671 * 10 8 7 13 13 H 1.48496 * 109.47141 * 59.99751 * 12 10 8 14 14 H 1.48490 * 109.47071 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46993 * 300.00028 * 12 10 8 16 16 N 1.46495 * 109.47117 * 239.99544 * 2 1 3 17 17 C 1.34775 * 119.99841 * 85.00162 * 16 2 1 18 18 O 1.21284 * 120.00211 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99971 * 179.97438 * 17 16 2 20 20 H 1.08999 * 110.50193 * 40.70325 * 19 17 16 21 21 C 1.54083 * 110.56820 * 277.95939 * 19 17 16 22 22 O 1.45696 * 104.01063 * 241.42587 * 21 19 17 23 23 C 1.33771 * 109.47617 * 0.02562 * 22 21 19 24 24 O 1.21516 * 123.07178 * 180.02562 * 23 22 21 25 25 N 1.34321 * 113.90300 * 359.91344 * 23 22 21 26 26 H 1.09000 * 109.47476 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 28 28 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 29 29 H 1.08995 * 109.47418 * 65.00237 * 4 2 1 30 30 H 1.09001 * 109.47199 * 304.99778 * 4 2 1 31 31 H 1.09003 * 109.47221 * 60.00555 * 5 4 2 32 32 H 1.08993 * 109.47355 * 300.00167 * 5 4 2 33 33 H 1.09003 * 109.46946 * 60.00823 * 6 5 4 34 34 H 1.08993 * 109.47679 * 300.00366 * 6 5 4 35 35 H 0.97000 * 119.99792 * 0.02562 * 7 6 5 36 36 H 0.97005 * 119.99715 * 179.97438 * 11 10 8 37 37 H 0.96997 * 120.00184 * 264.99946 * 16 2 1 38 38 H 1.09000 * 110.51941 * 0.05831 * 21 19 17 39 39 H 1.09004 * 110.52124 * 122.65363 * 21 19 17 40 40 H 0.97004 * 125.73927 * 180.11705 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0747 -1.3339 2.5634 7 7 5.5348 -1.2300 2.6254 8 6 6.2185 -1.8041 3.6637 9 1 5.6815 -2.3338 4.4367 10 6 7.6024 -1.7106 3.7194 11 7 8.2568 -1.0655 2.7771 12 14 8.5358 -2.5003 5.1317 13 1 8.2742 -3.9620 5.1419 14 1 9.9908 -2.2584 4.9600 15 1 8.0841 -1.9077 6.4162 16 7 2.0183 -0.6907 -1.1961 17 6 2.1471 -0.0184 -2.3571 18 8 1.8582 1.1583 -2.4117 19 6 2.6499 -0.7287 -3.5874 20 1 2.2158 -1.7262 -3.6565 21 6 4.1887 -0.8077 -3.5759 22 8 4.5887 -0.0689 -4.7662 23 6 3.4995 0.3840 -5.3970 24 8 3.5494 1.0339 -6.4226 25 7 2.3451 0.0532 -4.7954 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7517 -1.7714 1.2058 30 1 1.6054 -0.2616 2.1370 31 1 3.8532 0.4370 1.3574 32 1 3.9994 -1.0727 0.4261 33 1 3.7864 -2.3842 2.5202 34 1 3.6401 -0.8741 3.4509 35 1 6.0171 -0.7546 1.9310 36 1 9.2238 -0.9998 2.8163 37 1 2.2490 -1.6318 -1.1525 38 1 4.5889 -0.3339 -2.6795 39 1 4.5186 -1.8448 -3.6384 40 1 1.4567 0.2898 -5.1049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675892296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:39 Heat of formation + Delta-G solvation = -105.389064 kcal Electronic energy + Delta-G solvation = -22441.937661 eV Core-core repulsion = 18871.129955 eV Total energy + Delta-G solvation = -3570.807706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.08401 -39.93363 -37.44468 -36.97847 -35.05822 -34.88609 -32.83812 -31.53589 -29.94541 -29.34085 -25.85610 -25.11588 -23.10895 -22.70470 -21.55084 -20.91164 -20.85807 -18.53216 -18.32862 -17.32079 -17.07025 -16.73427 -16.11224 -15.24680 -15.10091 -14.77196 -14.57552 -14.47687 -14.31750 -13.93919 -13.77722 -13.60748 -13.08641 -12.98416 -12.65032 -12.36158 -12.21872 -11.43055 -11.32365 -11.19218 -10.99516 -10.90844 -10.88035 -10.67138 -10.55572 -10.49762 -10.09305 -9.74395 -9.62614 -9.40032 -8.91057 -6.96979 -5.80388 -3.09559 2.03301 2.17602 2.43237 2.72385 3.23804 3.41022 3.45575 3.46894 3.64078 4.06259 4.19760 4.48613 4.62187 4.67360 4.84075 4.88414 4.98618 5.05495 5.28059 5.40013 5.48461 5.52480 5.63240 5.80388 5.91591 5.95333 6.07943 6.22789 6.25007 6.31397 6.38292 6.76730 6.80477 6.86634 7.08636 7.65187 7.72301 7.79824 8.38538 9.49470 10.07413 10.41504 11.42350 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.003402 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.107080 B = 8227.475109 C = 9643.015076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.243 4.243 9 H 0.069 0.931 10 C -0.013 4.013 11 N -0.933 5.933 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.290 1.290 15 H -0.286 1.286 16 N -0.713 5.713 17 C 0.502 3.498 18 O -0.520 6.520 19 C 0.076 3.924 20 H 0.127 0.873 21 C 0.053 3.947 22 O -0.319 6.319 23 C 0.651 3.349 24 O -0.518 6.518 25 N -0.712 5.712 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.383 0.617 36 H 0.256 0.744 37 H 0.404 0.596 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.174 -3.130 -10.912 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.109 0.891 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.374 4.374 9 H 0.087 0.913 10 C -0.209 4.209 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.216 1.216 15 H -0.213 1.213 16 N -0.365 5.365 17 C 0.285 3.715 18 O -0.394 6.394 19 C -0.035 4.035 20 H 0.145 0.855 21 C -0.022 4.022 22 O -0.229 6.229 23 C 0.404 3.596 24 O -0.402 6.402 25 N -0.385 5.385 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.239 0.761 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -16.882 -2.015 -11.347 20.441 hybrid contribution 0.297 -0.747 0.733 1.089 sum -16.584 -2.762 -10.614 19.883 Atomic orbital electron populations 1.22169 0.95164 1.02130 1.02592 1.21130 0.93780 0.97889 0.83568 0.89121 1.21867 0.96968 1.00835 0.96503 1.21746 0.93519 1.01557 0.99574 1.20642 0.86270 0.96416 0.94160 1.42362 1.00142 1.66293 1.29070 1.19183 0.89417 1.27402 1.01421 0.91281 1.24749 0.96442 1.01113 0.98612 1.69644 1.07321 1.46793 1.34410 0.86265 0.79023 0.78982 0.81894 1.21254 1.21628 1.21257 1.46091 1.66665 1.14297 1.09491 1.20531 0.78738 0.87670 0.84549 1.90782 1.48804 1.15336 1.84513 1.22326 0.97727 0.97452 0.85991 0.85539 1.24319 0.90046 0.99694 0.88188 1.87333 1.30242 1.67045 1.38244 1.18529 0.79551 0.78451 0.83065 1.91091 1.85251 1.41404 1.22465 1.45717 1.09463 1.58256 1.25074 0.92371 0.91320 0.92372 0.91240 0.90069 0.91890 0.92115 0.96559 0.96515 0.78347 0.93402 0.76141 0.86671 0.85820 0.71686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.48 37.16 0.35 -0.90 16 2 C 0.14 1.25 2.57 -67.93 -0.17 1.07 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.63 16 4 C -0.12 -1.17 4.75 -26.73 -0.13 -1.30 16 5 C -0.13 -1.71 5.22 -26.73 -0.14 -1.85 16 6 C 0.15 2.82 6.26 -4.04 -0.03 2.79 16 7 N -0.73 -18.02 5.60 -59.90 -0.34 -18.36 16 8 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 11 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 12 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 16 N -0.71 -5.21 4.53 -53.80 -0.24 -5.45 16 17 C 0.50 4.53 6.91 -10.98 -0.08 4.45 16 18 O -0.52 -7.05 16.24 5.55 0.09 -6.96 16 19 C 0.08 0.48 4.17 -68.19 -0.28 0.20 16 20 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 21 C 0.05 0.38 7.87 37.72 0.30 0.68 16 22 O -0.32 -3.80 11.09 -37.83 -0.42 -4.22 16 23 C 0.65 8.36 9.16 53.85 0.49 8.85 16 24 O -0.52 -8.68 18.04 -19.12 -0.34 -9.02 16 25 N -0.71 -6.32 5.66 -59.27 -0.34 -6.65 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.79 7.75 -51.93 -0.40 0.38 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.38 9.88 7.67 -40.82 -0.31 9.57 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.40 1.90 8.60 -40.82 -0.35 1.55 16 38 H 0.12 0.88 7.72 -51.93 -0.40 0.48 16 39 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.44 3.24 8.96 -40.82 -0.37 2.87 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -36.95 342.83 -6.65 -43.60 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.00 Total: 5.30 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 0.07 Total: 6.69 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.19 Total: -57.55 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.67 Total: -20.20 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.95 -6.65 -43.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675892296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.785 kcal (2) G-P(sol) polarization free energy of solvation -36.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds