Wall clock time and date at job start Tue Mar 31 2020 03:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.53005 * 109.46913 * 119.99702 * 2 1 3 5 5 C 1.53003 * 109.46696 * 184.99891 * 4 2 1 6 6 C 1.53005 * 109.46696 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.46904 * 180.02562 * 6 5 4 8 8 C 1.36931 * 119.99788 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 6 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 6 11 11 N 1.31614 * 119.99888 * 0.27479 * 10 8 7 12 12 Si 1.86803 * 119.99862 * 180.27671 * 10 8 7 13 13 H 1.48496 * 109.47141 * 59.99751 * 12 10 8 14 14 H 1.48490 * 109.47071 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46993 * 300.00028 * 12 10 8 16 16 N 1.46495 * 109.47117 * 239.99544 * 2 1 3 17 17 C 1.34775 * 119.99841 * 85.00162 * 16 2 1 18 18 O 1.21284 * 120.00211 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99971 * 179.97438 * 17 16 2 20 20 H 1.08999 * 110.50193 * 40.70325 * 19 17 16 21 21 C 1.54083 * 110.56820 * 277.95939 * 19 17 16 22 22 O 1.45696 * 104.01063 * 241.42587 * 21 19 17 23 23 C 1.33771 * 109.47617 * 0.02562 * 22 21 19 24 24 O 1.21516 * 123.07178 * 180.02562 * 23 22 21 25 25 N 1.34321 * 113.90300 * 359.91344 * 23 22 21 26 26 H 1.09000 * 109.47476 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 28 28 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 29 29 H 1.08995 * 109.47418 * 65.00237 * 4 2 1 30 30 H 1.09001 * 109.47199 * 304.99778 * 4 2 1 31 31 H 1.09003 * 109.47221 * 60.00555 * 5 4 2 32 32 H 1.08993 * 109.47355 * 300.00167 * 5 4 2 33 33 H 1.09003 * 109.46946 * 60.00823 * 6 5 4 34 34 H 1.08993 * 109.47679 * 300.00366 * 6 5 4 35 35 H 0.97000 * 119.99792 * 0.02562 * 7 6 5 36 36 H 0.97005 * 119.99715 * 179.97438 * 11 10 8 37 37 H 0.96997 * 120.00184 * 264.99946 * 16 2 1 38 38 H 1.09000 * 110.51941 * 0.05831 * 21 19 17 39 39 H 1.09004 * 110.52124 * 122.65363 * 21 19 17 40 40 H 0.97004 * 125.73927 * 180.11705 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0747 -1.3339 2.5634 7 7 5.5348 -1.2300 2.6254 8 6 6.2185 -1.8041 3.6637 9 1 5.6815 -2.3338 4.4367 10 6 7.6024 -1.7106 3.7194 11 7 8.2568 -1.0655 2.7771 12 14 8.5358 -2.5003 5.1317 13 1 8.2742 -3.9620 5.1419 14 1 9.9908 -2.2584 4.9600 15 1 8.0841 -1.9077 6.4162 16 7 2.0183 -0.6907 -1.1961 17 6 2.1471 -0.0184 -2.3571 18 8 1.8582 1.1583 -2.4117 19 6 2.6499 -0.7287 -3.5874 20 1 2.2158 -1.7262 -3.6565 21 6 4.1887 -0.8077 -3.5759 22 8 4.5887 -0.0689 -4.7662 23 6 3.4995 0.3840 -5.3970 24 8 3.5494 1.0339 -6.4226 25 7 2.3451 0.0532 -4.7954 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7517 -1.7714 1.2058 30 1 1.6054 -0.2616 2.1370 31 1 3.8532 0.4370 1.3574 32 1 3.9994 -1.0727 0.4261 33 1 3.7864 -2.3842 2.5202 34 1 3.6401 -0.8741 3.4509 35 1 6.0171 -0.7546 1.9310 36 1 9.2238 -0.9998 2.8163 37 1 2.2490 -1.6318 -1.1525 38 1 4.5889 -0.3339 -2.6795 39 1 4.5186 -1.8448 -3.6384 40 1 1.4567 0.2898 -5.1049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675892296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:39 Heat of formation + Delta-G solvation = -136.201087 kcal Electronic energy + Delta-G solvation = -22443.273771 eV Core-core repulsion = 18871.129955 eV Total energy + Delta-G solvation = -3572.143816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.88061 -40.73338 -38.44960 -37.95849 -36.53080 -35.74046 -34.21252 -32.78733 -31.15210 -30.23199 -27.21295 -25.89017 -24.70139 -23.57041 -22.56416 -22.08205 -21.59530 -19.33462 -19.12433 -19.00264 -18.13184 -17.53686 -16.99123 -16.59396 -16.11900 -15.96601 -15.55242 -15.36610 -15.33385 -15.24076 -15.02322 -14.52978 -14.40023 -13.91673 -13.42865 -13.33866 -13.16406 -13.00011 -12.72423 -12.36157 -12.26444 -12.09797 -12.04042 -11.96705 -11.82598 -11.69606 -11.47122 -11.46329 -10.89621 -10.36161 -10.14080 -8.97478 -7.93821 -5.22381 1.30900 1.37841 1.49114 1.51633 1.58003 1.60188 2.01451 2.57750 2.57808 3.06577 3.40275 3.42434 3.67044 3.77078 3.99649 4.05673 4.15248 4.32351 4.40675 4.44356 4.49003 4.62123 4.72091 4.85962 4.91926 4.95935 5.03437 5.16706 5.34448 5.39153 5.47098 5.53911 5.56693 5.64448 6.04379 6.28905 6.46538 6.87713 7.14147 7.35083 8.13436 8.34338 9.29427 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.003402 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.107080 B = 8227.475109 C = 9643.015076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.061 0.939 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.149 3.851 7 N -0.750 5.750 8 C -0.247 4.247 9 H 0.076 0.924 10 C -0.075 4.075 11 N -0.970 5.970 12 Si 0.972 3.028 13 H -0.275 1.275 14 H -0.297 1.297 15 H -0.280 1.280 16 N -0.699 5.699 17 C 0.502 3.498 18 O -0.572 6.572 19 C 0.085 3.915 20 H 0.184 0.816 21 C 0.046 3.954 22 O -0.341 6.341 23 C 0.647 3.353 24 O -0.571 6.571 25 N -0.699 5.699 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.014 0.986 35 H 0.372 0.628 36 H 0.251 0.749 37 H 0.421 0.579 38 H 0.106 0.894 39 H 0.167 0.833 40 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.708 -5.618 -10.010 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.152 4.152 6 C 0.022 3.978 7 N -0.393 5.393 8 C -0.379 4.379 9 H 0.094 0.906 10 C -0.268 4.268 11 N -0.620 5.620 12 Si 0.801 3.199 13 H -0.201 1.201 14 H -0.223 1.223 15 H -0.206 1.206 16 N -0.352 5.352 17 C 0.286 3.714 18 O -0.450 6.450 19 C -0.025 4.025 20 H 0.201 0.799 21 C -0.028 4.028 22 O -0.251 6.251 23 C 0.400 3.600 24 O -0.459 6.459 25 N -0.372 5.372 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.032 0.968 35 H 0.204 0.796 36 H 0.059 0.941 37 H 0.259 0.741 38 H 0.124 0.876 39 H 0.185 0.815 40 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -18.479 -4.575 -10.386 21.686 hybrid contribution 0.713 0.008 0.554 0.903 sum -17.766 -4.567 -9.832 20.813 Atomic orbital electron populations 1.22093 0.93734 1.03294 1.02190 1.20969 0.94768 0.96488 0.83837 0.92050 1.21756 0.93546 1.02528 0.96940 1.21620 0.96443 0.99588 0.97565 1.20876 0.83014 0.97588 0.96273 1.42639 1.02628 1.65895 1.28120 1.19621 0.89939 1.26440 1.01932 0.90608 1.25561 0.97539 1.02432 1.01248 1.69803 1.07052 1.48753 1.36427 0.85236 0.77092 0.78537 0.79057 1.20054 1.22326 1.20602 1.45967 1.65656 1.14999 1.08551 1.20981 0.77867 0.87066 0.85505 1.90775 1.51228 1.17685 1.85334 1.22635 0.97395 0.98984 0.83446 0.79858 1.24747 0.90503 1.01310 0.86268 1.87290 1.30558 1.67571 1.39665 1.18704 0.80445 0.78069 0.82782 1.91035 1.86152 1.43780 1.24918 1.45684 1.08725 1.57520 1.25245 0.90328 0.90855 0.93745 0.88697 0.89663 0.93948 0.91299 0.95292 0.96808 0.79603 0.94053 0.74100 0.87556 0.81545 0.70909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.48 71.98 0.68 -1.33 16 2 C 0.14 2.27 2.57 44.99 0.12 2.39 16 3 H 0.06 1.37 7.58 -2.39 -0.02 1.36 16 4 C -0.11 -1.76 4.75 30.60 0.15 -1.61 16 5 C -0.11 -2.91 5.22 30.60 0.16 -2.75 16 6 C 0.15 5.23 6.26 86.38 0.54 5.77 16 7 N -0.75 -36.44 5.60 -343.44 -1.92 -38.36 16 8 C -0.25 -13.43 9.99 84.04 0.84 -12.59 16 9 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 10 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 11 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 12 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 14 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 N -0.70 -8.24 4.53 -442.53 -2.00 -10.24 16 17 C 0.50 8.12 6.91 87.66 0.61 8.72 16 18 O -0.57 -15.44 16.24 -3.04 -0.05 -15.49 16 19 C 0.08 0.84 4.17 44.50 0.19 1.02 16 20 H 0.18 -0.17 8.14 -2.39 -0.02 -0.19 16 21 C 0.05 0.55 7.87 72.35 0.57 1.12 16 22 O -0.34 -7.99 11.09 -47.31 -0.52 -8.51 16 23 C 0.65 16.69 9.16 129.86 1.19 17.88 16 24 O -0.57 -19.92 18.04 19.63 0.35 -19.57 16 25 N -0.70 -11.58 5.66 -572.80 -3.24 -14.82 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.63 7.75 -2.39 -0.02 1.62 16 33 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.37 19.35 7.67 -92.71 -0.71 18.64 16 36 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 37 H 0.42 2.14 8.60 -92.71 -0.80 1.34 16 38 H 0.11 1.48 7.72 -2.39 -0.02 1.46 16 39 H 0.17 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.45 6.15 8.96 -92.70 -0.83 5.32 16 Total: -1.00 -83.49 342.83 -0.84 -84.33 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -1.26 Total: 18.89 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 5.50 Total: 14.85 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -6.89 Total: -121.50 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -0.22 Total: -43.57 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -83.49 -0.84 -84.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675892296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.868 kcal (2) G-P(sol) polarization free energy of solvation -83.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds