Wall clock time and date at job start Tue Mar 31 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99747 * 2 1 4 4 H 1.48494 * 109.47499 * 270.00400 * 3 2 1 5 5 H 1.48504 * 109.46708 * 30.00500 * 3 2 1 6 6 H 1.48505 * 109.46996 * 149.99907 * 3 2 1 7 7 C 1.38812 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99714 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99757 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47208 * 35.00545 * 10 9 7 12 12 C 1.52997 * 109.47349 * 275.00268 * 10 9 7 13 13 O 1.42898 * 109.47319 * 295.00332 * 12 10 9 14 14 C 1.53007 * 109.46612 * 155.00244 * 10 9 7 15 15 N 1.46494 * 109.47545 * 305.00137 * 14 10 9 16 16 C 1.34776 * 120.00130 * 180.02562 * 15 14 10 17 17 O 1.21273 * 120.00018 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99797 * 180.02562 * 16 15 14 19 19 H 1.09004 * 109.40225 * 60.16878 * 18 16 15 20 20 C 1.53065 * 109.40009 * 180.02562 * 18 16 15 21 21 C 1.53344 * 108.42866 * 169.03147 * 20 18 16 22 22 C 1.52923 * 108.67049 * 292.47030 * 21 20 18 23 23 N 1.45755 * 110.49002 * 50.74810 * 22 21 20 24 24 C 1.33343 * 124.10534 * 340.93218 * 23 22 21 25 25 O 1.21284 * 118.24633 * 182.22490 * 24 23 22 26 26 H 0.96998 * 119.99868 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00421 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.47153 * 175.00025 * 12 10 9 29 29 H 1.09001 * 109.46832 * 55.00216 * 12 10 9 30 30 H 0.96701 * 113.99881 * 180.02562 * 13 12 10 31 31 H 1.08995 * 109.47221 * 65.00654 * 14 10 9 32 32 H 1.09005 * 109.46665 * 184.99888 * 14 10 9 33 33 H 0.97003 * 119.99396 * 359.97438 * 15 14 10 34 34 H 1.09004 * 109.67249 * 288.76089 * 20 18 16 35 35 H 1.08998 * 109.67768 * 49.25913 * 20 18 16 36 36 H 1.09002 * 109.60568 * 52.21936 * 21 20 18 37 37 H 1.08998 * 109.60971 * 172.55165 * 21 20 18 38 38 H 1.09002 * 109.29973 * 171.06354 * 22 21 20 39 39 H 1.09007 * 109.30030 * 290.64501 * 22 21 20 40 40 H 0.97001 * 117.94229 * 160.92445 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9690 -3.5505 0.5890 12 6 2.4223 -4.0355 -1.4375 13 8 1.2282 -4.2885 -2.1805 14 6 1.1810 -4.7521 0.6091 15 7 0.7343 -4.3355 1.9406 16 6 -0.0547 -5.1478 2.6714 17 8 -0.3953 -6.2233 2.2266 18 6 -0.5147 -4.7189 4.0409 19 1 -1.0926 -3.7984 3.9570 20 6 -1.3910 -5.8163 4.6498 21 6 -1.6183 -5.4894 6.1306 22 6 -0.2874 -5.6241 6.8716 23 7 0.7561 -4.8711 6.1872 24 6 0.6815 -4.4761 4.9158 25 8 1.6307 -3.8896 4.4403 26 1 -0.4850 0.8400 0.0004 27 1 0.3557 -2.3881 -0.0005 28 1 3.0429 -4.9316 -1.4309 29 1 2.9720 -3.2163 -1.9010 30 1 1.3835 -4.5352 -3.1025 31 1 0.3136 -4.9201 -0.0291 32 1 1.7560 -5.6746 0.6908 33 1 1.0071 -3.4753 2.2965 34 1 -2.3488 -5.8515 4.1305 35 1 -0.8889 -6.7795 4.5590 36 1 -1.9889 -4.4689 6.2271 37 1 -2.3456 -6.1839 6.5511 38 1 -0.4000 -5.2430 7.8866 39 1 -0.0018 -6.6754 6.9111 40 1 1.5548 -4.6428 6.6881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676543880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:03 Heat of formation + Delta-G solvation = -115.738087 kcal Electronic energy + Delta-G solvation = -23387.624408 eV Core-core repulsion = 19816.367934 eV Total energy + Delta-G solvation = -3571.256474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80612 -38.71633 -37.07167 -36.56054 -34.78220 -33.34853 -33.10690 -31.26715 -30.02884 -28.21077 -25.83475 -24.27642 -23.47959 -22.86247 -20.49431 -19.96491 -19.06835 -17.64155 -17.37844 -16.84940 -16.51444 -16.47466 -15.60155 -15.16720 -14.78389 -14.47134 -14.24361 -14.01364 -13.85429 -13.54139 -13.32892 -13.26600 -12.87444 -12.68099 -12.05455 -11.84931 -11.57931 -11.49334 -11.31230 -11.14643 -10.80263 -10.79114 -10.47723 -10.03800 -9.83011 -9.72045 -9.51775 -9.28885 -9.22804 -8.90081 -8.41765 -6.95198 -5.73865 -3.03181 2.48311 2.84288 3.27691 3.44903 3.50294 3.51741 3.68372 4.41062 4.48844 4.57697 4.60284 4.62284 4.99848 5.08544 5.15883 5.23212 5.39210 5.50288 5.54166 5.61653 5.62459 5.67083 5.83911 5.97547 6.07711 6.11399 6.15896 6.46243 6.59127 6.62746 6.84662 7.05314 7.12608 7.70718 8.04979 8.15729 8.26652 8.43328 8.68859 9.55651 10.11033 10.47961 11.48145 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015782 B = 0.004981 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.698368 B = 5619.729175 C = 6708.656548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.165 3.835 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.118 3.882 15 N -0.693 5.693 16 C 0.525 3.475 17 O -0.554 6.554 18 C -0.128 4.128 19 H 0.132 0.868 20 C -0.103 4.103 21 C -0.139 4.139 22 C 0.109 3.891 23 N -0.720 5.720 24 C 0.527 3.473 25 O -0.532 6.532 26 H 0.255 0.745 27 H 0.388 0.612 28 H 0.026 0.974 29 H 0.048 0.952 30 H 0.363 0.637 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.419 0.581 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 -12.605 12.157 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.353 5.353 10 C 0.054 3.946 11 H 0.085 0.915 12 C -0.021 4.021 13 O -0.363 6.363 14 C -0.006 4.006 15 N -0.344 5.344 16 C 0.309 3.691 17 O -0.434 6.434 18 C -0.152 4.152 19 H 0.149 0.851 20 C -0.141 4.141 21 C -0.177 4.177 22 C -0.015 4.015 23 N -0.373 5.373 24 C 0.313 3.687 25 O -0.408 6.408 26 H 0.064 0.936 27 H 0.222 0.778 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.207 0.793 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.258 0.742 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -1.320 -12.780 12.046 17.612 hybrid contribution 0.858 1.393 -0.202 1.649 sum -0.461 -11.387 11.844 16.437 Atomic orbital electron populations 1.69682 1.05071 1.25563 1.57311 1.24723 0.95454 0.97577 1.02818 0.86216 0.78710 0.83980 0.77410 1.21837 1.21838 1.20755 1.19232 0.90944 0.84079 1.43084 0.91208 1.42335 1.05990 0.99066 1.87918 1.20591 0.95227 0.87010 0.91749 0.91550 1.23038 0.86463 0.97218 0.95405 1.86573 1.32219 1.91888 1.25638 1.21550 0.99419 0.96880 0.82765 1.46046 1.48881 1.22228 1.17271 1.19664 0.79081 0.84606 0.85765 1.90659 1.57759 1.22624 1.72319 1.21474 0.96552 1.03438 0.93725 0.85075 1.21488 1.00456 0.97954 0.94212 1.21932 0.96593 1.03476 0.95667 1.21421 0.87814 0.96265 0.96014 1.45365 1.22274 1.57472 1.12163 1.19654 0.88513 0.78365 0.82196 1.90827 1.37259 1.41081 1.71675 0.93558 0.77751 0.95556 0.93325 0.79258 0.90590 0.92327 0.74225 0.89766 0.90030 0.90667 0.89319 0.90459 0.91567 0.76316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -17.95 4.51 -53.42 -0.24 -18.20 16 10 C 0.17 3.42 2.84 -67.93 -0.19 3.23 16 11 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 12 C 0.06 1.11 6.86 37.16 0.25 1.36 16 13 O -0.56 -10.44 12.64 -35.23 -0.45 -10.88 16 14 C 0.12 2.32 5.12 -4.04 -0.02 2.30 16 15 N -0.69 -13.51 4.87 -60.30 -0.29 -13.80 16 16 C 0.53 9.52 7.06 -10.99 -0.08 9.44 16 17 O -0.55 -11.13 15.79 5.56 0.09 -11.05 16 18 C -0.13 -1.79 2.78 -93.14 -0.26 -2.04 16 19 H 0.13 1.73 8.14 -51.93 -0.42 1.30 16 20 C -0.10 -1.10 4.78 -26.52 -0.13 -1.23 16 21 C -0.14 -0.98 6.02 -26.59 -0.16 -1.14 16 22 C 0.11 0.73 7.17 -4.48 -0.03 0.70 16 23 N -0.72 -7.28 5.45 -61.38 -0.33 -7.61 16 24 C 0.53 7.55 7.28 -11.88 -0.09 7.46 16 25 O -0.53 -9.80 15.53 5.55 0.09 -9.71 16 26 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.39 10.73 7.80 -40.82 -0.32 10.41 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.36 4.89 9.12 45.56 0.42 5.31 16 31 H 0.08 1.61 7.39 -51.93 -0.38 1.23 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.42 8.79 6.76 -40.82 -0.28 8.51 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.95 7.73 -51.93 -0.40 0.55 16 36 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 40 H 0.40 3.61 8.80 -40.82 -0.36 3.25 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -35.25 333.14 -6.46 -41.71 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -5.09 Total: 21.57 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -0.95 Total: 12.87 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -0.14 Total: -67.00 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.27 Total: -31.64 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.25 -6.46 -41.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676543880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.030 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds