Wall clock time and date at job start Tue Mar 31 2020 02:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34637 * 117.00109 * 2 1 4 4 O 1.21506 * 120.00023 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99782 * 180.02562 * 3 2 1 6 6 C 1.47613 * 118.74654 * 0.02562 * 5 3 2 7 7 C 1.53773 * 111.31901 * 138.32676 * 6 5 3 8 8 C 1.51275 * 109.61530 * 319.93605 * 7 6 5 9 9 N 1.46195 * 109.09556 * 92.41954 * 8 7 6 10 10 C 1.46901 * 111.00304 * 144.75947 * 9 8 7 11 11 C 1.50699 * 109.46916 * 64.78334 * 10 9 8 12 12 O 1.21294 * 120.00052 * 354.36393 * 11 10 9 13 13 N 1.34771 * 120.00115 * 174.35483 * 11 10 9 14 14 C 1.37097 * 120.00212 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00143 * 0.02562 * 14 13 11 16 16 C 1.38958 * 119.99991 * 180.02562 * 14 13 11 17 17 N 1.31408 * 119.99683 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99974 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47107 * 89.99510 * 18 16 14 20 20 H 1.48495 * 109.47127 * 209.99667 * 18 16 14 21 21 H 1.48503 * 109.46996 * 329.99864 * 18 16 14 22 22 C 1.41454 * 116.34611 * 272.96523 * 9 8 7 23 23 C 1.44887 * 118.74312 * 180.02562 * 5 3 2 24 24 H 1.09000 * 109.47227 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46762 * 299.99744 * 1 2 3 26 26 H 1.08997 * 109.47165 * 59.99420 * 1 2 3 27 27 H 1.09000 * 109.11033 * 258.78311 * 6 5 3 28 28 H 1.08993 * 109.11363 * 17.91090 * 6 5 3 29 29 H 1.08998 * 109.44414 * 199.89367 * 7 6 5 30 30 H 1.09005 * 109.45426 * 79.98345 * 7 6 5 31 31 H 1.09000 * 109.53336 * 332.53452 * 8 7 6 32 32 H 1.08997 * 109.52728 * 212.30163 * 8 7 6 33 33 H 1.08998 * 109.47247 * 184.78813 * 10 9 8 34 34 H 1.09002 * 109.46950 * 304.78861 * 10 9 8 35 35 H 0.97004 * 120.00289 * 0.02562 * 13 11 10 36 36 H 0.97006 * 119.99545 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.38421 * 183.64209 * 22 9 8 38 38 H 1.09002 * 109.38182 * 303.32759 * 22 9 8 39 39 H 1.09000 * 109.43376 * 149.65484 * 23 5 3 40 40 H 1.08999 * 109.39704 * 29.76691 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.1859 0.0148 -0.0017 7 6 5.3896 0.1029 -0.9546 8 6 4.9854 0.8316 -2.2172 9 7 5.2790 2.2554 -2.0624 10 6 5.7136 2.8448 -3.3359 11 6 4.5798 2.7908 -4.3272 12 8 3.5497 2.2184 -4.0399 13 7 4.7102 3.3788 -5.5328 14 6 3.6786 3.3302 -6.4345 15 1 2.7612 2.8211 -6.1785 16 6 3.8133 3.9360 -7.6778 17 7 2.8247 3.8890 -8.5421 18 14 5.4004 4.8160 -8.1209 19 1 6.3352 3.8574 -8.7631 20 1 5.1049 5.9256 -9.0625 21 1 6.0228 5.3645 -6.8891 22 6 4.2709 3.0420 -1.4576 23 6 4.0387 2.5751 0.0001 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 4.5444 -0.1840 1.0083 28 1 3.5402 -0.8041 -0.3186 29 1 5.7263 -0.9024 -1.2077 30 1 6.2000 0.6445 -0.4666 31 1 3.9178 0.6962 -2.3902 32 1 5.5463 0.4336 -3.0628 33 1 6.0065 3.8822 -3.1749 34 1 6.5632 2.2835 -3.7248 35 1 5.5341 3.8364 -5.7627 36 1 2.9189 4.3116 -9.4102 37 1 4.5791 4.0876 -1.4577 38 1 3.3443 2.9395 -2.0225 39 1 4.9954 2.5161 0.5189 40 1 3.3922 3.2885 0.5112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066497535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:07 Heat of formation + Delta-G solvation = -118.211037 kcal Electronic energy + Delta-G solvation = -23867.213502 eV Core-core repulsion = 20295.849793 eV Total energy + Delta-G solvation = -3571.363709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.90346 -40.86914 -39.14361 -37.50445 -36.48540 -35.72310 -33.81207 -33.59785 -30.85887 -28.80380 -27.67763 -27.06193 -25.57245 -23.67185 -21.89414 -21.26602 -21.15743 -20.19968 -19.11215 -18.28437 -17.79034 -17.65922 -16.99075 -16.54496 -16.41982 -16.29167 -15.69587 -15.39383 -15.16089 -14.88711 -14.64041 -14.40604 -14.20514 -14.02846 -13.38952 -13.29384 -13.01478 -12.97755 -12.70858 -12.46657 -12.41968 -12.24591 -12.02298 -11.88106 -11.86651 -11.76283 -11.55706 -11.43081 -10.91541 -10.27453 -9.78885 -9.07369 -8.45656 -6.06693 1.18594 1.27869 1.33345 1.42804 1.69277 1.91810 2.20304 2.86939 2.95016 2.99699 3.11740 3.84584 3.99593 4.17675 4.19378 4.23163 4.27740 4.29540 4.34947 4.46093 4.54759 4.59356 4.64647 4.70494 4.78542 4.89922 4.94379 5.10221 5.19683 5.22483 5.35767 5.49435 5.62311 5.89008 6.02217 6.16137 6.37552 6.54988 6.84820 7.17075 7.35822 7.93824 8.72543 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022421 B = 0.004522 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.525880 B = 6190.551157 C = 6834.690493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.373 6.373 3 C 0.632 3.368 4 O -0.613 6.613 5 N -0.582 5.582 6 C 0.110 3.890 7 C -0.118 4.118 8 C 0.070 3.930 9 N -0.513 5.513 10 C 0.053 3.947 11 C 0.413 3.587 12 O -0.621 6.621 13 N -0.589 5.589 14 C -0.330 4.330 15 H 0.046 0.954 16 C -0.017 4.017 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.254 1.254 20 H -0.276 1.276 21 H -0.229 1.229 22 C 0.045 3.955 23 C 0.141 3.859 24 H 0.140 0.860 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.011 0.989 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.390 0.610 36 H 0.279 0.721 37 H 0.093 0.907 38 H -0.001 1.001 39 H 0.128 0.872 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.081 -6.370 18.988 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.286 6.286 3 C 0.387 3.613 4 O -0.505 6.505 5 N -0.322 5.322 6 C -0.011 4.011 7 C -0.156 4.156 8 C -0.057 4.057 9 N -0.235 5.235 10 C -0.078 4.078 11 C 0.200 3.800 12 O -0.506 6.506 13 N -0.231 5.231 14 C -0.460 4.460 15 H 0.064 0.936 16 C -0.215 4.215 17 N -0.577 5.577 18 Si 0.789 3.211 19 H -0.178 1.178 20 H -0.201 1.201 21 H -0.152 1.152 22 C -0.085 4.085 23 C 0.019 3.981 24 H 0.158 0.842 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.226 0.774 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.018 0.982 39 H 0.145 0.855 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.406 -6.448 19.329 22.879 hybrid contribution -1.204 0.672 -1.803 2.270 sum 9.202 -5.776 17.526 20.620 Atomic orbital electron populations 1.23435 0.73404 1.05545 1.01962 1.86216 1.25365 1.30205 1.86830 1.18591 0.84539 0.82063 0.76138 1.90945 1.65492 1.36325 1.57729 1.46916 1.01315 1.09545 1.74384 1.22240 0.93784 0.83351 1.01725 1.21872 0.97586 1.02051 0.94076 1.21511 0.98578 0.87070 0.98574 1.59158 1.40498 1.02750 1.21046 1.22369 0.94657 1.04043 0.86752 1.22535 0.91508 0.81988 0.83957 1.90566 1.33362 1.48332 1.78372 1.42205 1.15665 1.50874 1.14313 1.18963 0.96031 1.35154 0.95809 0.93584 1.26205 1.02713 0.97988 0.94615 1.69824 1.34557 1.45148 1.08209 0.85308 0.77101 0.78600 0.80132 1.17849 1.20096 1.15222 1.21800 0.93299 0.97903 0.95528 1.21647 0.99169 0.81889 0.95413 0.84226 0.91406 0.94003 0.88231 0.90372 0.87831 0.88120 0.97009 0.91820 0.86100 0.85534 0.77374 0.91131 0.88839 0.98246 0.85456 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.20 10.56 113.37 1.20 2.39 16 2 O -0.37 -11.07 9.09 -55.46 -0.50 -11.58 16 3 C 0.63 21.86 8.35 129.79 1.08 22.94 16 4 O -0.61 -25.66 15.56 19.82 0.31 -25.35 16 5 N -0.58 -16.19 2.18 -948.21 -2.07 -18.26 16 6 C 0.11 2.17 6.15 86.43 0.53 2.70 16 7 C -0.12 -2.15 5.78 30.29 0.18 -1.98 16 8 C 0.07 2.07 4.13 85.87 0.35 2.42 16 9 N -0.51 -14.57 3.99 -916.10 -3.66 -18.23 16 10 C 0.05 1.57 5.58 85.56 0.48 2.04 16 11 C 0.41 18.64 7.22 87.66 0.63 19.28 16 12 O -0.62 -34.80 12.19 -3.07 -0.04 -34.83 16 13 N -0.59 -28.10 5.09 -306.99 -1.56 -29.66 16 14 C -0.33 -19.83 10.16 84.04 0.85 -18.98 16 15 H 0.05 3.34 7.39 -2.91 -0.02 3.32 16 16 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 17 N -0.94 -57.77 13.96 21.67 0.30 -57.47 16 18 Si 0.97 39.17 27.74 68.60 1.90 41.08 16 19 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 20 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 22 C 0.05 1.44 4.93 87.92 0.43 1.88 16 23 C 0.14 3.61 5.52 87.30 0.48 4.09 16 24 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.67 6.91 -2.39 -0.02 1.66 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 1.49 7.98 -2.38 -0.02 1.47 16 31 H 0.01 0.46 6.22 -2.39 -0.01 0.45 16 32 H 0.06 1.88 7.57 -2.39 -0.02 1.86 16 33 H 0.12 2.87 7.92 -2.39 -0.02 2.85 16 34 H 0.13 2.95 7.94 -2.39 -0.02 2.93 16 35 H 0.39 15.26 5.76 -92.71 -0.53 14.72 16 36 H 0.28 15.69 8.31 -92.70 -0.77 14.92 16 37 H 0.09 2.63 7.85 -2.39 -0.02 2.61 16 38 H 0.00 -0.03 6.21 -2.39 -0.01 -0.05 16 39 H 0.13 2.24 8.11 -2.39 -0.02 2.22 16 40 H 0.08 2.19 7.28 -2.39 -0.02 2.17 16 Total: -1.00 -87.68 320.57 1.83 -85.84 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.46 Total: 32.14 kcal Atomic # 6 Polarization: 29.62 SS G_CDS: 6.69 Total: 36.31 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -6.99 Total: -123.62 kcal Atomic # 8 Polarization: -71.52 SS G_CDS: -0.23 Total: -71.76 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.90 Total: 41.08 kcal Total: -87.68 1.83 -85.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.370 kcal (2) G-P(sol) polarization free energy of solvation -87.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds