Wall clock time and date at job start Tue Mar 31 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00249 * 2 1 4 4 H 1.48495 * 109.47138 * 270.00343 * 3 2 1 5 5 H 1.48502 * 109.46759 * 30.00238 * 3 2 1 6 6 H 1.48503 * 109.47273 * 150.00095 * 3 2 1 7 7 C 1.38816 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99611 * 205.23467 * 7 2 1 9 9 N 1.36934 * 119.99933 * 25.22946 * 7 2 1 10 10 C 1.46503 * 119.99889 * 228.27557 * 9 7 2 11 11 C 1.52996 * 117.50162 * 8.84561 * 10 9 7 12 12 C 1.53003 * 117.49912 * 300.18648 * 10 9 7 13 13 S 1.65602 * 120.00117 * 48.27743 * 9 7 2 14 14 O 1.42098 * 106.39901 * 336.45484 * 13 9 7 15 15 O 1.42098 * 106.40353 * 203.53929 * 13 9 7 16 16 C 1.76198 * 107.21906 * 89.99804 * 13 9 7 17 17 C 1.38240 * 120.40567 * 269.97867 * 16 13 9 18 18 N 1.31841 * 120.82447 * 180.02562 * 17 16 13 19 19 C 1.31877 * 121.74416 * 359.72597 * 18 17 16 20 20 C 1.38420 * 120.72971 * 0.53751 * 19 18 17 21 21 F 1.35096 * 120.44609 * 179.75072 * 20 19 18 22 22 C 1.38583 * 120.40670 * 89.99980 * 16 13 9 23 23 H 0.96998 * 119.99600 * 354.25666 * 1 2 3 24 24 H 1.09001 * 115.54713 * 154.52011 * 10 9 7 25 25 H 1.08998 * 117.49579 * 0.02562 * 11 10 9 26 26 H 1.08996 * 117.49976 * 145.02127 * 11 10 9 27 27 H 1.09002 * 117.49807 * 214.98470 * 12 10 9 28 28 H 1.09000 * 117.49590 * 359.97438 * 12 10 9 29 29 H 1.08007 * 119.58797 * 0.04208 * 17 16 13 30 30 H 1.08005 * 119.63378 * 180.29182 * 19 18 17 31 31 H 1.08000 * 120.79840 * 359.95674 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0129 -1.2470 0.3982 9 7 1.4235 -2.3313 -0.5065 10 6 1.4565 -3.5799 0.2591 11 6 1.9736 -3.5132 1.6975 12 6 2.8292 -4.1601 0.6055 13 16 0.6767 -2.2854 -1.9839 14 8 0.3198 -0.9288 -2.2110 15 8 -0.2660 -3.3486 -1.9902 16 6 1.8909 -2.6899 -3.1949 17 6 2.6522 -1.6962 -3.7815 18 7 3.5626 -1.9895 -4.6889 19 6 3.7884 -3.2320 -5.0689 20 6 3.0616 -4.2796 -4.5300 21 9 3.2942 -5.5497 -4.9272 22 6 2.0942 -4.0080 -3.5714 23 1 -0.4849 0.8358 0.0841 24 1 0.6520 -4.2836 0.0456 25 1 2.2888 -2.5402 2.0743 26 1 1.5095 -4.1732 2.4303 27 1 2.9276 -5.2456 0.6203 28 1 3.7077 -3.6131 0.2634 29 1 2.4994 -0.6667 -3.4927 30 1 4.5460 -3.4340 -5.8117 31 1 1.5143 -4.8050 -3.1296 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332005166.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:31 Heat of formation + Delta-G solvation = -57.523859 kcal Electronic energy + Delta-G solvation = -21153.762151 eV Core-core repulsion = 17670.770845 eV Total energy + Delta-G solvation = -3482.991306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.057 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.12411 -41.02133 -38.81903 -37.68773 -36.16511 -35.13570 -33.70782 -32.50984 -32.02041 -26.87359 -25.32607 -24.72246 -23.01551 -22.25072 -20.83360 -19.71107 -18.49344 -18.40659 -17.93233 -17.64957 -17.12886 -16.91697 -16.72317 -16.00244 -15.54172 -15.24056 -14.96633 -14.62134 -14.38111 -14.10496 -13.69153 -13.49902 -13.13699 -12.96983 -12.57336 -12.51853 -12.32231 -12.16499 -12.12914 -11.95820 -11.66536 -11.35939 -10.95779 -10.74598 -10.55221 -10.24024 -9.36410 -8.48443 -6.11963 -0.55096 -0.19894 0.02191 1.50964 1.58149 1.64623 2.22516 2.34513 2.73594 2.81882 2.96946 3.19716 3.23651 3.44039 3.51975 3.79619 3.83234 4.00490 4.19293 4.31525 4.38291 4.53532 4.60046 4.76415 4.87902 4.95294 5.26791 5.39729 5.43733 5.54438 5.75705 6.23575 6.51218 6.94710 7.37058 8.56188 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.017448 B = 0.008145 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.363275 B = 3436.853055 C = 4025.036462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.021 3.979 3 Si 0.972 3.028 4 H -0.276 1.276 5 H -0.277 1.277 6 H -0.243 1.243 7 C -0.275 4.275 8 H 0.099 0.901 9 N -0.789 5.789 10 C 0.053 3.947 11 C -0.151 4.151 12 C -0.186 4.186 13 S 2.545 3.455 14 O -0.974 6.974 15 O -1.035 7.035 16 C -0.697 4.697 17 C 0.169 3.831 18 N -0.482 5.482 19 C 0.112 3.888 20 C 0.026 3.974 21 F -0.124 7.124 22 C -0.031 4.031 23 H 0.283 0.717 24 H 0.115 0.885 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.168 0.832 30 H 0.211 0.789 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.232 -5.514 -1.697 10.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.202 1.202 5 H -0.202 1.202 6 H -0.166 1.166 7 C -0.425 4.425 8 H 0.117 0.883 9 N -0.610 5.610 10 C -0.055 4.055 11 C -0.190 4.190 12 C -0.226 4.226 13 S 2.647 3.353 14 O -0.962 6.962 15 O -1.025 7.025 16 C -0.776 4.776 17 C 0.012 3.988 18 N -0.190 5.190 19 C -0.047 4.047 20 C 0.004 3.996 21 F -0.102 7.102 22 C -0.059 4.059 23 H 0.092 0.908 24 H 0.133 0.867 25 H 0.116 0.884 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.107 0.893 29 H 0.185 0.815 30 H 0.227 0.773 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.596 -4.782 -2.651 9.359 hybrid contribution -0.127 -0.266 -0.193 0.352 sum 7.469 -5.048 -2.844 9.453 Atomic orbital electron populations 1.69899 1.08966 1.30647 1.34552 1.26592 0.95387 1.03924 0.93613 0.85252 0.79438 0.77028 0.78877 1.20184 1.20165 1.16608 1.19398 0.99688 0.85773 1.37592 0.88319 1.52420 1.72976 1.12743 1.22888 1.21652 0.97948 0.88432 0.97450 1.23178 1.02525 1.02882 0.90460 1.23399 0.94600 1.00747 1.03840 1.11693 0.77847 0.72417 0.73357 1.93383 1.82321 1.35232 1.85266 1.93242 1.63385 1.58394 1.87453 1.33341 1.23346 1.00027 1.20902 1.22561 0.87805 0.99644 0.88743 1.67887 1.17231 1.20940 1.12990 1.23694 0.97242 0.86227 0.97497 1.18792 1.00093 0.80973 0.99718 1.91524 1.93619 1.35636 1.89452 1.21458 0.94423 0.96468 0.93514 0.90752 0.86748 0.88401 0.86980 0.86706 0.89318 0.81505 0.77292 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.81 11.52 21.65 0.25 -42.56 16 2 C 0.02 1.02 4.00 84.86 0.34 1.36 16 3 Si 0.97 38.09 29.63 68.60 2.03 40.12 16 4 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.24 -8.51 7.11 99.48 0.71 -7.80 16 7 C -0.27 -12.63 7.67 84.03 0.64 -11.99 16 8 H 0.10 4.17 7.75 -2.91 -0.02 4.15 16 9 N -0.79 -35.97 3.06 -322.94 -0.99 -36.95 16 10 C 0.05 2.06 6.39 44.99 0.29 2.35 16 11 C -0.15 -4.87 9.84 30.62 0.30 -4.57 16 12 C -0.19 -5.64 10.27 30.62 0.31 -5.33 16 13 S 2.55 123.81 5.46 -56.49 -0.31 123.50 16 14 O -0.97 -53.18 13.30 -128.00 -1.70 -54.88 16 15 O -1.04 -53.99 16.14 -128.00 -2.07 -56.06 16 16 C -0.70 -28.55 5.99 22.35 0.13 -28.42 16 17 C 0.17 6.61 10.68 84.69 0.90 7.52 16 18 N -0.48 -16.46 10.36 -195.65 -2.03 -18.48 16 19 C 0.11 3.15 11.17 84.73 0.95 4.10 16 20 C 0.03 0.80 7.35 22.47 0.17 0.96 16 21 F -0.12 -3.37 17.28 44.97 0.78 -2.60 16 22 C -0.03 -1.12 9.64 22.51 0.22 -0.91 16 23 H 0.28 14.25 8.32 -92.71 -0.77 13.47 16 24 H 0.11 4.49 7.37 -2.39 -0.02 4.47 16 25 H 0.10 3.39 6.98 -2.39 -0.02 3.38 16 26 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.17 6.64 7.63 -2.91 -0.02 6.62 16 30 H 0.21 3.87 8.06 -2.91 -0.02 3.84 16 31 H 0.16 5.37 7.71 -2.91 -0.02 5.35 16 Total: -1.00 -62.64 289.30 1.39 -61.25 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.17 Total: 21.58 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 4.25 Total: -34.92 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -2.76 Total: -98.00 kcal Atomic # 8 Polarization: -107.17 SS G_CDS: -3.77 Total: -110.94 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Atomic # 16 Polarization: 123.81 SS G_CDS: -0.31 Total: 123.50 kcal Total: -62.64 1.39 -61.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332005166.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.722 kcal (2) G-P(sol) polarization free energy of solvation -62.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds