Wall clock time and date at job start Tue Mar 31 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.54476 * 2 1 4 4 C 1.53101 * 109.50247 * 120.10516 * 2 1 3 5 5 O 1.43015 * 109.25309 * 176.78369 * 4 2 1 6 6 C 1.43016 * 113.73913 * 301.32794 * 5 4 2 7 7 C 1.53100 * 109.25980 * 58.67534 * 6 5 4 8 8 N 1.47011 * 109.50484 * 239.88554 * 2 1 3 9 9 C 1.46906 * 110.99935 * 57.67957 * 8 2 1 10 10 C 1.52998 * 109.47020 * 189.67909 * 9 8 2 11 11 N 1.46496 * 109.47242 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00005 * 179.97438 * 11 10 9 13 13 O 1.21579 * 119.99941 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99545 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99815 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47415 * 179.97438 * 15 14 12 17 17 C 1.50694 * 109.47168 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99902 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99854 * 179.72538 * 19 17 16 22 22 H 1.48498 * 109.46909 * 90.00086 * 21 19 17 23 23 H 1.48497 * 109.46701 * 209.99996 * 21 19 17 24 24 H 1.48500 * 109.46867 * 330.00101 * 21 19 17 25 25 H 1.08998 * 109.47205 * 180.11093 * 1 2 3 26 26 H 1.09004 * 109.47213 * 300.11157 * 1 2 3 27 27 H 1.09002 * 109.47021 * 60.11049 * 1 2 3 28 28 H 1.09000 * 109.50743 * 56.84962 * 4 2 1 29 29 H 1.09000 * 109.50465 * 296.71650 * 4 2 1 30 30 H 1.09003 * 109.50830 * 298.74007 * 6 5 4 31 31 H 1.09007 * 109.50816 * 178.60926 * 6 5 4 32 32 H 1.09001 * 109.50681 * 183.21543 * 7 6 5 33 33 H 1.08999 * 109.54251 * 63.10513 * 7 6 5 34 34 H 1.08996 * 109.47124 * 69.67840 * 9 8 2 35 35 H 1.09002 * 109.46819 * 309.67336 * 9 8 2 36 36 H 1.09004 * 109.47429 * 59.99381 * 10 9 8 37 37 H 1.09006 * 109.47297 * 299.99556 * 10 9 8 38 38 H 0.97005 * 119.99806 * 0.02562 * 11 10 9 39 39 H 0.96996 * 120.00568 * 0.02562 * 14 12 11 40 40 H 1.09000 * 109.46981 * 59.99638 * 15 14 12 41 41 H 1.09002 * 109.46732 * 299.99696 * 15 14 12 42 42 H 1.08998 * 109.46837 * 59.99777 * 16 15 14 43 43 H 1.09002 * 109.46926 * 299.99581 * 16 15 14 44 44 H 0.97001 * 119.99646 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0411 -0.7239 1.2485 5 8 3.4693 -0.7866 1.2057 6 6 3.9818 -1.4579 0.0515 7 6 3.4903 -0.7414 -1.2091 8 7 2.0209 -0.6953 -1.1987 9 6 1.5055 -0.0645 -2.4213 10 6 1.8334 -0.9467 -3.6275 11 7 1.3189 -0.3181 -4.8466 12 6 1.4930 -0.9196 -6.0400 13 8 2.0766 -1.9842 -6.1048 14 7 1.0201 -0.3409 -7.1616 15 6 1.2088 -0.9950 -8.4588 16 6 0.5822 -0.1361 -9.5591 17 6 0.7769 -0.8087 -10.8935 18 1 1.2960 -1.7540 -10.9513 19 6 0.2922 -0.2171 -12.0409 20 7 -0.3395 0.9342 -11.9707 21 14 0.5403 -1.0471 -13.6960 22 1 -0.6061 -1.9490 -13.9741 23 1 0.6270 -0.0143 -14.7594 24 1 1.7971 -1.8376 -13.6698 25 1 -0.3633 -1.0276 0.0020 26 1 -0.3634 0.5156 0.8890 27 1 -0.3633 0.5121 -0.8910 28 1 1.6331 -1.7342 1.2761 29 1 1.7272 -0.1793 2.1390 30 1 3.6301 -2.4896 0.0443 31 1 5.0715 -1.4443 0.0764 32 1 3.8313 -1.2827 -2.0916 33 1 3.8862 0.2739 -1.2292 34 1 1.9699 0.9132 -2.5492 35 1 0.4249 0.0541 -2.3410 36 1 1.3690 -1.9246 -3.4995 37 1 2.9140 -1.0655 -3.7078 38 1 0.8536 0.5315 -4.7949 39 1 0.5548 0.5086 -7.1100 40 1 0.7295 -1.9739 -8.4453 41 1 2.2745 -1.1149 -8.6536 42 1 1.0611 0.8429 -9.5727 43 1 -0.4836 -0.0166 -9.3641 44 1 -0.6807 1.3502 -12.7779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343863205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:17 Heat of formation + Delta-G solvation = -78.269097 kcal Electronic energy + Delta-G solvation = -22245.160011 eV Core-core repulsion = 18811.361409 eV Total energy + Delta-G solvation = -3433.798602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27197 -39.47820 -36.83148 -35.04927 -34.35287 -33.03710 -32.75714 -30.33603 -29.16386 -27.65500 -26.33866 -24.53790 -23.11576 -22.28620 -21.04136 -20.66629 -20.31831 -18.03782 -16.99904 -16.65295 -16.33727 -16.03076 -15.88904 -15.49050 -15.15245 -14.78352 -14.53049 -14.39478 -14.16546 -13.68783 -13.40360 -13.38462 -12.86832 -12.60480 -12.38456 -12.27151 -12.16288 -11.80209 -11.57763 -11.18225 -11.11866 -11.00644 -10.91016 -10.62651 -10.30727 -10.01954 -9.93235 -9.55342 -9.25780 -9.01448 -8.82177 -8.47869 -8.23901 -6.08824 -4.11285 2.83115 3.30157 3.36111 3.40367 3.45387 3.54379 3.60338 4.29064 4.40528 4.45292 4.49636 4.69087 4.72157 4.76874 4.84647 4.92593 5.03129 5.08264 5.21604 5.25246 5.28339 5.31390 5.44748 5.47266 5.54155 5.72595 5.78914 5.82803 6.30426 6.40877 6.46008 6.53545 6.64535 6.74793 6.78745 7.00831 7.23009 7.57438 7.63978 7.90541 8.26537 8.43852 8.93516 9.00610 9.53384 11.02862 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.047693 B = 0.002208 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.941631 B =12677.798549 C =13050.639953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 H 0.050 0.950 4 C 0.069 3.931 5 O -0.387 6.387 6 C 0.063 3.937 7 C 0.012 3.988 8 N -0.528 5.528 9 C 0.040 3.960 10 C 0.145 3.855 11 N -0.754 5.754 12 C 0.699 3.301 13 O -0.597 6.597 14 N -0.739 5.739 15 C 0.140 3.860 16 C 0.013 3.987 17 C -0.520 4.520 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.393 0.607 39 H 0.393 0.607 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 0.948 27.066 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 H 0.068 0.932 4 C -0.008 4.008 5 O -0.305 6.305 6 C -0.014 4.014 7 C -0.116 4.116 8 N -0.254 5.254 9 C -0.088 4.088 10 C 0.019 3.981 11 N -0.412 5.412 12 C 0.399 3.601 13 O -0.476 6.476 14 N -0.392 5.392 15 C 0.017 3.983 16 C -0.025 4.025 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.226 0.774 39 H 0.226 0.774 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.324 -0.339 27.026 27.232 hybrid contribution -0.267 1.260 -1.230 1.781 sum 3.056 0.921 25.796 25.993 Atomic orbital electron populations 1.21870 0.93277 1.03165 1.02302 1.22319 0.96515 0.96515 0.91016 0.93157 1.22722 0.80952 1.00464 0.96674 1.87986 1.20665 1.78506 1.43379 1.22692 0.99078 0.95792 0.83798 1.22920 0.87772 1.00714 1.00223 1.62110 1.08556 1.53236 1.01482 1.22356 1.01495 0.95809 0.89167 1.20987 0.99235 0.96423 0.81408 1.45015 1.64130 1.26280 1.05753 1.16015 0.79935 0.83832 0.80317 1.90891 1.48067 1.22600 1.86015 1.45531 1.61159 1.25876 1.06650 1.21594 1.00483 0.96629 0.79569 1.19325 0.96219 0.95169 0.91752 1.21058 1.36832 1.06819 0.91186 0.92201 1.25005 0.95015 0.94926 0.99415 1.69958 1.37896 1.16693 1.28842 0.86503 0.78726 0.79098 0.83175 1.20558 1.21196 1.19711 0.91305 0.91749 0.91826 0.92061 0.88480 0.91990 0.88282 0.88786 0.93731 0.94052 0.89307 0.90904 0.91945 0.77405 0.77418 0.92767 0.92793 0.95994 0.95974 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.92 37.16 0.33 -0.53 16 2 C 0.04 0.33 2.59 -67.60 -0.17 0.15 16 3 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 4 C 0.07 0.49 6.29 37.21 0.23 0.73 16 5 O -0.39 -3.56 10.83 -35.23 -0.38 -3.94 16 6 C 0.06 0.49 7.01 37.21 0.26 0.75 16 7 C 0.01 0.10 5.43 -3.71 -0.02 0.08 16 8 N -0.53 -4.42 4.54 -226.33 -1.03 -5.45 16 9 C 0.04 0.33 4.85 -3.82 -0.02 0.31 16 10 C 0.14 1.63 5.60 -4.04 -0.02 1.60 16 11 N -0.75 -9.49 5.56 -65.23 -0.36 -9.85 16 12 C 0.70 12.38 8.57 -86.92 -0.74 11.63 16 13 O -0.60 -13.07 16.34 5.30 0.09 -12.99 16 14 N -0.74 -13.15 5.56 -65.22 -0.36 -13.52 16 15 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 16 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 17 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.37 6.17 -51.93 -0.32 0.05 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.78 6.37 -51.93 -0.33 0.45 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 35 H 0.09 0.67 5.77 -51.93 -0.30 0.37 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.76 6.51 -51.93 -0.34 0.42 16 38 H 0.39 3.76 8.49 -40.82 -0.35 3.41 16 39 H 0.39 5.95 8.49 -40.82 -0.35 5.61 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -33.30 353.31 -9.18 -42.47 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.44 Total: 2.34 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -0.73 Total: 4.63 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -1.02 Total: -54.28 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.29 Total: -16.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.30 -9.18 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343863205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.796 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds