Wall clock time and date at job start Tue Mar 31 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.54476 * 2 1 4 4 C 1.53101 * 109.50247 * 120.10516 * 2 1 3 5 5 O 1.43015 * 109.25309 * 176.78369 * 4 2 1 6 6 C 1.43016 * 113.73913 * 301.32794 * 5 4 2 7 7 C 1.53100 * 109.25980 * 58.67534 * 6 5 4 8 8 N 1.47011 * 109.50484 * 239.88554 * 2 1 3 9 9 C 1.46906 * 110.99935 * 57.67957 * 8 2 1 10 10 C 1.52998 * 109.47020 * 189.67909 * 9 8 2 11 11 N 1.46496 * 109.47242 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00005 * 179.97438 * 11 10 9 13 13 O 1.21579 * 119.99941 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99545 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99815 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47415 * 179.97438 * 15 14 12 17 17 C 1.50694 * 109.47168 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99902 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99854 * 179.72538 * 19 17 16 22 22 H 1.48498 * 109.46909 * 90.00086 * 21 19 17 23 23 H 1.48497 * 109.46701 * 209.99996 * 21 19 17 24 24 H 1.48500 * 109.46867 * 330.00101 * 21 19 17 25 25 H 1.08998 * 109.47205 * 180.11093 * 1 2 3 26 26 H 1.09004 * 109.47213 * 300.11157 * 1 2 3 27 27 H 1.09002 * 109.47021 * 60.11049 * 1 2 3 28 28 H 1.09000 * 109.50743 * 56.84962 * 4 2 1 29 29 H 1.09000 * 109.50465 * 296.71650 * 4 2 1 30 30 H 1.09003 * 109.50830 * 298.74007 * 6 5 4 31 31 H 1.09007 * 109.50816 * 178.60926 * 6 5 4 32 32 H 1.09001 * 109.50681 * 183.21543 * 7 6 5 33 33 H 1.08999 * 109.54251 * 63.10513 * 7 6 5 34 34 H 1.08996 * 109.47124 * 69.67840 * 9 8 2 35 35 H 1.09002 * 109.46819 * 309.67336 * 9 8 2 36 36 H 1.09004 * 109.47429 * 59.99381 * 10 9 8 37 37 H 1.09006 * 109.47297 * 299.99556 * 10 9 8 38 38 H 0.97005 * 119.99806 * 0.02562 * 11 10 9 39 39 H 0.96996 * 120.00568 * 0.02562 * 14 12 11 40 40 H 1.09000 * 109.46981 * 59.99638 * 15 14 12 41 41 H 1.09002 * 109.46732 * 299.99696 * 15 14 12 42 42 H 1.08998 * 109.46837 * 59.99777 * 16 15 14 43 43 H 1.09002 * 109.46926 * 299.99581 * 16 15 14 44 44 H 0.97001 * 119.99646 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0411 -0.7239 1.2485 5 8 3.4693 -0.7866 1.2057 6 6 3.9818 -1.4579 0.0515 7 6 3.4903 -0.7414 -1.2091 8 7 2.0209 -0.6953 -1.1987 9 6 1.5055 -0.0645 -2.4213 10 6 1.8334 -0.9467 -3.6275 11 7 1.3189 -0.3181 -4.8466 12 6 1.4930 -0.9196 -6.0400 13 8 2.0766 -1.9842 -6.1048 14 7 1.0201 -0.3409 -7.1616 15 6 1.2088 -0.9950 -8.4588 16 6 0.5822 -0.1361 -9.5591 17 6 0.7769 -0.8087 -10.8935 18 1 1.2960 -1.7540 -10.9513 19 6 0.2922 -0.2171 -12.0409 20 7 -0.3395 0.9342 -11.9707 21 14 0.5403 -1.0471 -13.6960 22 1 -0.6061 -1.9490 -13.9741 23 1 0.6270 -0.0143 -14.7594 24 1 1.7971 -1.8376 -13.6698 25 1 -0.3633 -1.0276 0.0020 26 1 -0.3634 0.5156 0.8890 27 1 -0.3633 0.5121 -0.8910 28 1 1.6331 -1.7342 1.2761 29 1 1.7272 -0.1793 2.1390 30 1 3.6301 -2.4896 0.0443 31 1 5.0715 -1.4443 0.0764 32 1 3.8313 -1.2827 -2.0916 33 1 3.8862 0.2739 -1.2292 34 1 1.9699 0.9132 -2.5492 35 1 0.4249 0.0541 -2.3410 36 1 1.3690 -1.9246 -3.4995 37 1 2.9140 -1.0655 -3.7078 38 1 0.8536 0.5315 -4.7949 39 1 0.5548 0.5086 -7.1100 40 1 0.7295 -1.9739 -8.4453 41 1 2.2745 -1.1149 -8.6536 42 1 1.0611 0.8429 -9.5727 43 1 -0.4836 -0.0166 -9.3641 44 1 -0.6807 1.3502 -12.7779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343863205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:16 Heat of formation + Delta-G solvation = -104.460800 kcal Electronic energy + Delta-G solvation = -22246.295768 eV Core-core repulsion = 18811.361409 eV Total energy + Delta-G solvation = -3434.934359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13383 -40.66163 -37.63668 -36.61472 -35.57956 -34.79907 -33.60926 -31.77428 -30.41812 -28.30946 -27.26391 -26.29608 -23.71280 -23.30525 -22.72175 -22.02044 -21.03237 -19.42379 -18.42989 -17.72807 -17.30644 -17.04671 -16.88348 -16.48296 -16.47018 -16.00092 -15.70018 -15.42802 -15.27551 -14.97029 -14.72167 -14.45929 -14.21695 -13.78403 -13.21036 -13.15224 -12.99086 -12.91842 -12.82176 -12.52064 -12.49454 -12.22368 -12.14327 -11.79434 -11.69177 -11.53134 -11.47713 -11.22728 -10.61336 -10.60062 -10.35141 -9.72172 -9.46362 -8.23617 -6.33614 1.42418 1.43041 1.54229 1.67543 2.15853 2.41321 2.71057 2.92874 3.11259 3.45248 3.69678 3.80257 3.89556 4.03652 4.15081 4.21397 4.28131 4.38608 4.47472 4.48902 4.52978 4.66781 4.69932 4.78089 4.83952 4.86456 4.87474 4.91183 4.95156 5.07702 5.30276 5.31932 5.45581 5.52233 5.60395 5.79507 5.89108 5.92296 6.04416 6.16024 6.18011 6.79586 7.12710 7.35606 7.59179 8.88266 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.047693 B = 0.002208 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.941631 B =12677.798549 C =13050.639953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 H 0.047 0.953 4 C 0.065 3.935 5 O -0.405 6.405 6 C 0.063 3.937 7 C 0.012 3.988 8 N -0.537 5.537 9 C 0.051 3.949 10 C 0.148 3.852 11 N -0.732 5.732 12 C 0.698 3.302 13 O -0.640 6.640 14 N -0.732 5.732 15 C 0.160 3.840 16 C 0.024 3.976 17 C -0.546 4.546 18 H 0.059 0.941 19 C 0.006 3.994 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.267 1.267 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.412 0.588 39 H 0.408 0.592 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.600 1.320 27.772 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.062 4.062 3 H 0.065 0.935 4 C -0.011 4.011 5 O -0.324 6.324 6 C -0.014 4.014 7 C -0.116 4.116 8 N -0.264 5.264 9 C -0.077 4.077 10 C 0.023 3.977 11 N -0.389 5.389 12 C 0.398 3.602 13 O -0.522 6.522 14 N -0.387 5.387 15 C 0.036 3.964 16 C -0.013 4.013 17 C -0.585 4.585 18 H 0.077 0.923 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.191 1.191 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.248 0.752 39 H 0.243 0.757 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.028 0.972 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.997 0.081 27.785 27.946 hybrid contribution -0.176 1.160 -1.366 1.801 sum 2.821 1.240 26.418 26.597 Atomic orbital electron populations 1.21854 0.92068 1.03102 1.03204 1.22361 0.97417 0.96076 0.90355 0.93487 1.22875 0.80072 1.00762 0.97417 1.87961 1.21820 1.78697 1.43883 1.22757 0.99873 0.95484 0.83271 1.22902 0.87837 1.00530 1.00290 1.62109 1.08647 1.53716 1.01885 1.22232 1.02371 0.95188 0.87880 1.21024 0.98459 0.96458 0.81765 1.44795 1.63085 1.26542 1.04484 1.16126 0.79472 0.83380 0.81243 1.90864 1.49951 1.24649 1.86774 1.45199 1.61551 1.26353 1.05617 1.21075 0.99175 0.95654 0.80512 1.19126 0.95379 0.94784 0.92056 1.21471 1.37073 1.07139 0.92782 0.92312 1.25874 0.94568 0.95530 1.03256 1.70057 1.38558 1.17922 1.30061 0.85443 0.78931 0.78210 0.78450 1.19740 1.20522 1.19106 0.91801 0.90167 0.91641 0.92138 0.86757 0.92146 0.87026 0.89267 0.93983 0.93227 0.87968 0.92399 0.92857 0.75211 0.75696 0.93851 0.93891 0.97260 0.97225 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.92 71.98 0.64 -0.73 16 2 C 0.05 0.59 2.59 44.93 0.12 0.70 16 3 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 4 C 0.07 0.84 6.29 72.02 0.45 1.30 16 5 O -0.40 -7.02 10.83 -148.98 -1.61 -8.63 16 6 C 0.06 0.92 7.01 72.02 0.50 1.43 16 7 C 0.01 0.19 5.43 86.31 0.47 0.66 16 8 N -0.54 -8.32 4.54 -869.97 -3.95 -12.26 16 9 C 0.05 0.76 4.85 86.30 0.42 1.18 16 10 C 0.15 3.18 5.60 86.38 0.48 3.67 16 11 N -0.73 -17.38 5.56 -478.54 -2.66 -20.04 16 12 C 0.70 24.29 8.57 179.05 1.53 25.82 16 13 O -0.64 -28.16 16.34 -3.97 -0.06 -28.23 16 14 N -0.73 -25.70 5.56 -478.53 -2.66 -28.36 16 15 C 0.16 7.01 5.61 86.38 0.48 7.50 16 16 C 0.02 1.22 5.09 29.85 0.15 1.37 16 17 C -0.55 -30.62 9.11 25.60 0.23 -30.39 16 18 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 19 C 0.01 0.36 5.46 84.66 0.46 0.82 16 20 N -0.93 -54.21 13.29 21.45 0.28 -53.92 16 21 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.60 6.17 -2.39 -0.01 0.58 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.09 1.46 6.37 -2.39 -0.02 1.44 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.68 8.12 -2.39 -0.02 0.66 16 35 H 0.10 1.27 5.77 -2.39 -0.01 1.26 16 36 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.05 1.28 6.51 -2.38 -0.02 1.26 16 38 H 0.41 6.91 8.49 -92.70 -0.79 6.12 16 39 H 0.41 11.90 8.49 -92.71 -0.79 11.12 16 40 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -70.84 353.31 -3.26 -74.10 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.58 Total: 18.30 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 5.95 Total: 13.33 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -8.99 Total: -114.58 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -1.68 Total: -36.86 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.84 -3.26 -74.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343863205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.357 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds