Wall clock time and date at job start Tue Mar 31 2020 02:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47002 * 2 1 4 4 O 1.42897 * 109.47091 * 120.00284 * 2 1 3 5 5 C 1.53004 * 109.47556 * 240.00485 * 2 1 3 6 6 N 1.46892 * 109.47326 * 174.47417 * 5 2 1 7 7 C 1.46891 * 111.00045 * 309.17116 * 6 5 2 8 8 C 1.53249 * 109.34244 * 187.25572 * 7 6 5 9 9 N 1.47081 * 108.51525 * 306.16831 * 8 7 6 10 10 C 1.34771 * 120.87930 * 231.15805 * 9 8 7 11 11 O 1.21589 * 120.00122 * 174.83661 * 10 9 8 12 12 N 1.34784 * 119.99994 * 354.83862 * 10 9 8 13 13 C 1.46500 * 119.99841 * 184.68404 * 12 10 9 14 14 C 1.50699 * 109.47052 * 179.97438 * 13 12 10 15 15 H 1.07995 * 119.99933 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99942 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00375 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99933 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47015 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46735 * 120.00324 * 18 16 14 21 21 H 1.48491 * 109.47328 * 240.00344 * 18 16 14 22 22 C 1.47074 * 118.23867 * 51.18527 * 9 8 7 23 23 H 1.09003 * 109.63213 * 68.52416 * 22 9 8 24 24 C 1.52998 * 109.62973 * 189.10083 * 22 9 8 25 25 C 1.46904 * 111.00207 * 73.47271 * 6 5 2 26 26 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47387 * 300.00100 * 1 2 3 28 28 H 1.09010 * 109.47260 * 59.99902 * 1 2 3 29 29 H 0.96695 * 114.00229 * 59.99979 * 4 2 1 30 30 H 1.08994 * 109.47207 * 54.46859 * 5 2 1 31 31 H 1.09000 * 109.46410 * 294.47620 * 5 2 1 32 32 H 1.09001 * 109.49283 * 307.21102 * 7 6 5 33 33 H 1.08997 * 109.49956 * 67.29662 * 7 6 5 34 34 H 1.08993 * 109.62873 * 186.45948 * 8 7 6 35 35 H 1.09003 * 109.78717 * 65.97108 * 8 7 6 36 36 H 0.96998 * 119.99914 * 4.68432 * 12 10 9 37 37 H 1.08992 * 109.47468 * 300.00470 * 13 12 10 38 38 H 1.09001 * 109.47046 * 59.99857 * 13 12 10 39 39 H 0.96994 * 119.99773 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.47392 * 174.06913 * 24 22 9 41 41 H 1.09005 * 109.47262 * 294.07224 * 24 22 9 42 42 H 1.09001 * 109.47366 * 54.07110 * 24 22 9 43 43 H 1.09001 * 109.49218 * 292.71041 * 25 6 5 44 44 H 1.09001 * 109.49226 * 52.78660 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0062 -0.6737 1.1667 5 6 2.0400 -0.7211 -1.2493 6 7 3.5029 -0.6067 -1.3178 7 6 3.9293 0.7906 -1.1650 8 6 5.4367 0.8923 -1.4220 9 7 6.1256 -0.0675 -0.5460 10 6 7.1547 0.3216 0.2323 11 8 7.6519 -0.4609 1.0190 12 7 7.6329 1.5783 0.1388 13 6 8.8155 1.9713 0.9089 14 6 9.1412 3.4155 0.6274 15 1 8.5283 3.9839 -0.0564 16 6 10.2210 4.0115 1.2437 17 7 10.9671 3.3195 2.0769 18 14 10.6243 5.8019 0.8952 19 1 9.6392 6.3524 -0.0700 20 1 10.5643 6.5779 2.1599 21 1 11.9895 5.8988 0.3193 22 6 5.6621 -1.4633 -0.5424 23 1 5.8945 -1.9288 -1.5002 24 6 6.3517 -2.2310 0.5872 25 6 4.1460 -1.4722 -0.3201 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.7209 -1.5952 1.2328 30 1 1.5982 -0.2677 -2.1365 31 1 1.7597 -1.7734 -1.2012 32 1 3.3953 1.4143 -1.8819 33 1 3.7094 1.1296 -0.1527 34 1 5.7788 1.9028 -1.1988 35 1 5.6501 0.6553 -2.4643 36 1 7.1939 2.2225 -0.4385 37 1 8.6151 1.8444 1.9727 38 1 9.6607 1.3459 0.6214 39 1 11.7269 3.7387 2.5101 40 1 5.9303 -3.2339 0.6550 41 1 7.4199 -2.2988 0.3811 42 1 6.1962 -1.7071 1.5303 43 1 3.9229 -1.1019 0.6805 44 1 3.7691 -2.4896 -0.4242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355643597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:36 Heat of formation + Delta-G solvation = -81.258139 kcal Electronic energy + Delta-G solvation = -23955.080143 eV Core-core repulsion = 20521.151926 eV Total energy + Delta-G solvation = -3433.928216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.65712 -39.97370 -37.82854 -36.38261 -35.28479 -34.67004 -33.13827 -32.09634 -29.87020 -28.61930 -27.65599 -25.26920 -24.83309 -23.75946 -22.62611 -21.82373 -20.64446 -19.10742 -17.99986 -17.48902 -17.36428 -16.88849 -16.83087 -16.40613 -16.09366 -15.79409 -15.54221 -15.47779 -15.00164 -14.69600 -14.09287 -14.01009 -13.63072 -13.48809 -13.42426 -13.30407 -13.02233 -12.81618 -12.76960 -12.71942 -12.41093 -12.24988 -12.17258 -12.12890 -11.95877 -11.81444 -11.42891 -11.23957 -10.80217 -10.28101 -9.92652 -9.45733 -8.97241 -8.28342 -6.44966 1.42754 1.44782 1.57844 1.78595 2.26879 2.38482 2.93328 3.06438 3.18506 3.46637 3.76590 3.92294 4.01941 4.07655 4.16695 4.23345 4.31488 4.37003 4.39194 4.60651 4.70450 4.76195 4.84498 4.86812 4.92010 4.95615 5.00784 5.05996 5.15618 5.25748 5.27596 5.31647 5.40297 5.48230 5.72551 5.79146 5.86821 6.03077 6.04235 6.22226 6.67093 6.82632 7.21982 7.25762 7.76947 8.84322 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.003826 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.225395 B = 7315.666149 C = 7939.060250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 H 0.084 0.916 4 O -0.581 6.581 5 C 0.029 3.971 6 N -0.531 5.531 7 C 0.044 3.956 8 C 0.111 3.889 9 N -0.628 5.628 10 C 0.689 3.311 11 O -0.631 6.631 12 N -0.728 5.728 13 C 0.288 3.712 14 C -0.554 4.554 15 H 0.081 0.919 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.987 3.013 19 H -0.253 1.253 20 H -0.279 1.279 21 H -0.277 1.277 22 C 0.161 3.839 23 H 0.080 0.920 24 C -0.121 4.121 25 C 0.045 3.955 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.385 0.615 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.027 0.973 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.398 0.602 37 H -0.018 1.018 38 H -0.016 1.016 39 H 0.269 0.731 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.052 0.948 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.481 -7.423 -10.704 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.000 4.000 3 H 0.101 0.899 4 O -0.389 6.389 5 C -0.099 4.099 6 N -0.254 5.254 7 C -0.085 4.085 8 C -0.012 4.012 9 N -0.367 5.367 10 C 0.391 3.609 11 O -0.513 6.513 12 N -0.384 5.384 13 C 0.165 3.835 14 C -0.592 4.592 15 H 0.099 0.901 16 C -0.196 4.196 17 N -0.569 5.569 18 Si 0.810 3.190 19 H -0.176 1.176 20 H -0.204 1.204 21 H -0.203 1.203 22 C 0.058 3.942 23 H 0.097 0.903 24 C -0.178 4.178 25 C -0.084 4.084 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.234 0.766 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.045 0.955 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.236 0.764 37 H 0.000 1.000 38 H 0.002 0.998 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.528 -7.557 -10.403 25.939 hybrid contribution 0.124 0.798 0.868 1.185 sum -22.404 -6.759 -9.535 25.269 Atomic orbital electron populations 1.22366 0.94653 1.03397 1.02860 1.22766 0.94605 0.97008 0.85633 0.89853 1.86650 1.76955 1.30244 1.45039 1.23031 0.86472 1.02500 0.97898 1.62202 1.07336 1.07008 1.48823 1.22486 0.94691 0.90717 1.00573 1.21908 0.92019 0.92386 0.94863 1.47437 1.33501 1.11234 1.44521 1.16356 0.80638 0.82631 0.81254 1.90893 1.64457 1.53314 1.42676 1.45593 1.32402 1.10733 1.49691 1.18357 0.81357 0.94611 0.89183 1.21608 1.13791 0.95692 1.28063 0.90058 1.26081 0.95348 1.04066 0.94116 1.70157 1.18143 1.39145 1.29500 0.85083 0.78402 0.77201 0.78336 1.17612 1.20439 1.20307 1.21309 0.93976 0.79620 0.99282 0.90259 1.21892 0.99747 0.98602 0.97606 1.22711 0.91976 0.98630 0.95087 0.90943 0.93056 0.90248 0.76551 0.87929 0.88769 0.86974 0.95472 0.90065 0.89389 0.76443 1.00019 0.99791 0.92244 0.91181 0.93901 0.94384 0.93036 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.53 71.98 0.69 -1.00 16 2 C 0.06 0.84 3.13 30.59 0.10 0.94 16 3 H 0.08 1.47 6.14 -2.38 -0.01 1.45 16 4 O -0.58 -10.78 10.42 -148.98 -1.55 -12.33 16 5 C 0.03 0.34 5.24 86.31 0.45 0.79 16 6 N -0.53 -9.53 4.83 -895.28 -4.32 -13.85 16 7 C 0.04 0.88 4.68 86.39 0.40 1.28 16 8 C 0.11 2.75 6.54 86.35 0.56 3.32 16 9 N -0.63 -21.02 3.01 -811.96 -2.44 -23.47 16 10 C 0.69 31.09 8.21 179.05 1.47 32.56 16 11 O -0.63 -33.41 11.85 -4.00 -0.05 -33.46 16 12 N -0.73 -33.85 5.46 -482.30 -2.63 -36.49 16 13 C 0.29 16.70 5.43 85.63 0.47 17.16 16 14 C -0.55 -31.19 9.28 25.60 0.24 -30.95 16 15 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.19 5.46 84.65 0.46 0.65 16 17 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 18 Si 0.99 43.17 29.54 68.60 2.03 45.19 16 19 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 C 0.16 4.60 3.65 44.96 0.16 4.77 16 23 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 24 C -0.12 -4.01 7.61 71.98 0.55 -3.46 16 25 C 0.04 0.96 4.29 86.38 0.37 1.33 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.39 4.26 9.04 -74.06 -0.67 3.59 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.83 7.90 -2.39 -0.02 0.81 16 32 H 0.11 1.58 8.11 -2.39 -0.02 1.56 16 33 H 0.03 0.67 6.55 -2.39 -0.02 0.65 16 34 H 0.08 2.03 5.74 -2.39 -0.01 2.01 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.40 15.72 5.86 -92.71 -0.54 15.18 16 37 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 38 H -0.02 -1.03 8.14 -2.39 -0.02 -1.04 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.04 1.69 6.74 -2.38 -0.02 1.68 16 42 H 0.04 1.51 6.81 -2.39 -0.02 1.49 16 43 H 0.05 1.37 5.78 -2.39 -0.01 1.35 16 44 H 0.10 1.66 7.95 -2.39 -0.02 1.65 16 Total: -1.00 -76.93 338.58 -2.97 -79.91 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.21 Total: 24.28 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 5.92 Total: 27.39 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -9.11 Total: -130.98 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.60 Total: -45.79 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -76.93 -2.97 -79.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355643597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.353 kcal (2) G-P(sol) polarization free energy of solvation -76.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds