Wall clock time and date at job start Tue Mar 31 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47091 * 2 1 4 4 N 1.46500 * 109.46919 * 119.99998 * 2 1 3 5 5 C 1.34783 * 120.00087 * 274.99762 * 4 2 1 6 6 O 1.21589 * 119.99453 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00165 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99843 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.46892 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00371 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99820 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00180 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00203 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46969 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47058 * 119.99896 * 13 11 9 16 16 H 1.48498 * 109.47227 * 240.00341 * 13 11 9 17 17 C 1.52997 * 109.47079 * 239.99430 * 2 1 3 18 18 H 1.08995 * 109.47678 * 296.63414 * 17 2 1 19 19 C 1.52994 * 109.47173 * 176.63043 * 17 2 1 20 20 N 1.46899 * 109.46925 * 56.63001 * 17 2 1 21 21 C 1.47015 * 111.00121 * 191.09907 * 20 17 2 22 22 C 1.53106 * 109.25577 * 177.60985 * 21 20 17 23 23 O 1.43009 * 109.26107 * 56.85225 * 22 21 20 24 24 C 1.43026 * 113.73650 * 301.32647 * 23 22 21 25 25 C 1.47020 * 111.00168 * 67.46609 * 20 17 2 26 26 H 1.08996 * 109.47026 * 64.08777 * 1 2 3 27 27 H 1.08998 * 109.46809 * 184.09670 * 1 2 3 28 28 H 1.09006 * 109.46665 * 304.09478 * 1 2 3 29 29 H 0.97001 * 120.00778 * 94.99552 * 4 2 1 30 30 H 0.96998 * 120.00155 * 359.97438 * 7 5 4 31 31 H 1.09008 * 109.46846 * 299.99469 * 8 7 5 32 32 H 1.09001 * 109.47335 * 59.99166 * 8 7 5 33 33 H 0.97004 * 119.99972 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.47288 * 180.02562 * 19 17 2 35 35 H 1.09006 * 109.47382 * 300.00016 * 19 17 2 36 36 H 1.08995 * 109.47338 * 59.99940 * 19 17 2 37 37 H 1.08995 * 109.50453 * 297.53778 * 21 20 17 38 38 H 1.08993 * 109.50519 * 57.67643 * 21 20 17 39 39 H 1.08993 * 109.50515 * 296.91009 * 22 21 20 40 40 H 1.09001 * 109.53555 * 176.80989 * 22 21 20 41 41 H 1.09000 * 109.50244 * 298.73826 * 24 23 22 42 42 H 1.08994 * 109.53927 * 178.62988 * 24 23 22 43 43 H 1.08999 * 109.50179 * 302.32659 * 25 20 17 44 44 H 1.08991 * 109.50535 * 62.41173 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8575 1.1614 2.4118 7 7 2.5968 -0.6534 3.4575 8 6 2.7362 0.0773 4.7196 9 6 3.2539 -0.8543 5.7849 10 1 3.4583 -1.8876 5.5460 11 6 3.4667 -0.3877 7.0647 12 7 3.2184 0.8706 7.3557 13 14 4.1078 -1.5427 8.3855 14 1 4.3062 -2.8956 7.8062 15 1 5.4024 -1.0320 8.9038 16 1 3.1252 -1.6185 9.4963 17 6 2.0400 -0.7214 -1.2491 18 1 1.7269 -1.7649 -1.2195 19 6 3.5676 -0.6484 -1.2923 20 7 1.4850 -0.0776 -2.4472 21 6 1.7339 -0.8915 -3.6459 22 6 1.0889 -0.2149 -4.8585 23 8 1.6054 1.1123 -4.9885 24 6 1.3799 1.9330 -3.8390 25 6 2.0279 1.2782 -2.6162 26 1 -0.3633 0.4491 -0.9243 27 1 -0.3633 -1.0250 0.0734 28 1 -0.3633 0.5761 0.8511 29 1 2.2490 -1.6318 1.1528 30 1 2.8274 -1.5946 3.4140 31 1 3.4369 0.9017 4.5866 32 1 1.7653 0.4707 5.0209 33 1 3.3684 1.1990 8.2560 34 1 3.9309 -1.1619 -2.1824 35 1 3.8809 0.3953 -1.3221 36 1 3.9795 -1.1260 -0.4033 37 1 2.8080 -0.9815 -3.8081 38 1 1.3014 -1.8825 -3.5092 39 1 0.0086 -0.1732 -4.7200 40 1 1.3186 -0.7848 -5.7589 41 1 0.3080 2.0371 -3.6709 42 1 1.8202 2.9167 -4.0014 43 1 1.8099 1.8709 -1.7278 44 1 3.1067 1.2228 -2.7611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426435658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:24 Heat of formation + Delta-G solvation = -72.810493 kcal Electronic energy + Delta-G solvation = -23293.298034 eV Core-core repulsion = 19859.736135 eV Total energy + Delta-G solvation = -3433.561899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.34227 -39.17179 -37.26114 -34.63865 -33.93698 -32.35267 -31.51057 -30.78979 -29.63714 -27.05912 -26.62963 -24.39739 -23.80797 -22.58665 -21.17242 -20.11816 -19.71383 -18.15864 -16.84404 -16.48253 -16.10180 -15.79761 -15.39565 -15.12028 -15.00941 -14.73094 -14.61496 -14.04933 -13.87682 -13.63142 -13.37766 -12.91901 -12.57055 -12.34384 -12.26731 -11.96245 -11.94332 -11.73957 -11.69210 -11.38146 -11.22656 -10.92005 -10.89754 -10.80438 -10.52640 -10.29056 -9.94022 -9.36755 -9.33730 -8.77430 -8.69225 -8.54894 -7.73570 -6.14492 -4.20816 3.13659 3.24355 3.31529 3.34593 3.57760 3.76767 3.99790 4.33967 4.44195 4.62067 4.65608 4.84555 4.88816 4.91443 5.03298 5.07340 5.14891 5.21685 5.25410 5.35095 5.42918 5.46737 5.50895 5.64649 5.65254 5.70796 5.74794 5.99095 6.04866 6.19519 6.45441 6.66214 6.69667 6.85739 6.98326 7.15231 7.54363 7.57636 7.59191 7.93205 8.06597 8.78622 8.97702 9.36381 9.50738 10.95818 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.043861 B = 0.002827 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.232423 B = 9902.168210 C =10093.320333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.172 3.828 3 H 0.084 0.916 4 N -0.752 5.752 5 C 0.695 3.305 6 O -0.601 6.601 7 N -0.730 5.730 8 C 0.267 3.733 9 C -0.540 4.540 10 H 0.062 0.938 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.075 3.925 18 H 0.086 0.914 19 C -0.186 4.186 20 N -0.522 5.522 21 C 0.016 3.984 22 C 0.064 3.936 23 O -0.388 6.388 24 C 0.064 3.936 25 C 0.008 3.992 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.389 0.611 30 H 0.385 0.615 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.265 0.735 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 -4.933 -23.558 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.066 3.934 3 H 0.102 0.898 4 N -0.409 5.409 5 C 0.395 3.605 6 O -0.480 6.480 7 N -0.382 5.382 8 C 0.146 3.854 9 C -0.579 4.579 10 H 0.081 0.919 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.034 4.034 18 H 0.104 0.896 19 C -0.244 4.244 20 N -0.247 5.247 21 C -0.112 4.112 22 C -0.013 4.013 23 O -0.306 6.306 24 C -0.013 4.013 25 C -0.120 4.120 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.221 0.779 30 H 0.217 0.783 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.811 -3.559 -23.402 23.976 hybrid contribution 1.362 -1.685 1.006 2.389 sum -2.449 -5.245 -22.396 23.131 Atomic orbital electron populations 1.22081 0.95064 1.01679 1.02379 1.20549 0.94264 0.96677 0.81901 0.89795 1.45182 1.73407 1.13154 1.09196 1.16118 0.78860 0.85260 0.80310 1.90865 1.57808 1.14640 1.84645 1.45716 1.68669 1.13550 1.10303 1.18964 0.97174 0.91964 0.77281 1.21266 1.45543 0.96556 0.94534 0.91945 1.24950 0.95301 0.95309 0.98519 1.69992 1.47487 1.14101 1.20719 0.86367 0.78539 0.80631 0.81378 1.19688 1.20832 1.20809 1.21925 0.92776 0.98755 0.89900 0.89550 1.22441 0.96799 1.02835 1.02344 1.62346 1.57903 1.02303 1.02135 1.22798 0.99856 0.97768 0.90756 1.22646 0.97999 0.83318 0.97301 1.87979 1.80438 1.23288 1.38925 1.22685 1.00374 0.93844 0.84376 1.22933 0.98328 0.90793 0.99976 0.90973 0.93208 0.92404 0.77861 0.78259 0.95823 0.95789 0.92534 0.92697 0.91921 0.91289 0.93657 0.89651 0.92248 0.88649 0.92161 0.88440 0.88938 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.36 37.16 0.35 -1.63 16 2 C 0.17 2.23 1.89 -67.93 -0.13 2.11 16 3 H 0.08 1.29 6.14 -51.93 -0.32 0.97 16 4 N -0.75 -11.01 4.47 -58.67 -0.26 -11.27 16 5 C 0.69 14.26 8.53 -86.91 -0.74 13.52 16 6 O -0.60 -14.96 16.01 5.29 0.08 -14.87 16 7 N -0.73 -15.65 5.55 -66.41 -0.37 -16.02 16 8 C 0.27 7.21 5.43 -5.19 -0.03 7.18 16 9 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 10 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 13 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C 0.08 0.74 1.95 -67.72 -0.13 0.61 16 18 H 0.09 0.77 8.02 -51.93 -0.42 0.35 16 19 C -0.19 -1.83 8.28 37.15 0.31 -1.52 16 20 N -0.52 -4.79 3.69 -226.34 -0.83 -5.63 16 21 C 0.02 0.13 5.40 -3.71 -0.02 0.11 16 22 C 0.06 0.49 7.01 37.21 0.26 0.75 16 23 O -0.39 -3.83 10.83 -35.23 -0.38 -4.22 16 24 C 0.06 0.56 7.01 37.21 0.26 0.82 16 25 C 0.01 0.07 4.77 -3.71 -0.02 0.05 16 26 H 0.07 0.84 7.38 -51.93 -0.38 0.46 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.39 4.56 8.59 -40.82 -0.35 4.20 16 30 H 0.39 7.05 8.34 -40.82 -0.34 6.71 16 31 H 0.02 0.71 8.14 -51.92 -0.42 0.28 16 32 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.05 0.48 6.78 -51.93 -0.35 0.13 16 35 H 0.06 0.68 6.37 -51.93 -0.33 0.35 16 36 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 37 H 0.05 0.37 6.77 -51.93 -0.35 0.02 16 38 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.94 6.50 -51.93 -0.34 0.60 16 44 H 0.05 0.49 6.36 -51.93 -0.33 0.16 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -33.00 347.08 -8.37 -41.37 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.24 Total: 6.50 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -0.31 Total: 8.54 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.73 Total: -58.48 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.30 Total: -19.09 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.00 -8.37 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426435658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.439 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds