Wall clock time and date at job start Tue Mar 31 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47091 * 2 1 4 4 N 1.46500 * 109.46919 * 119.99998 * 2 1 3 5 5 C 1.34783 * 120.00087 * 274.99762 * 4 2 1 6 6 O 1.21589 * 119.99453 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00165 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99843 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.46892 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00371 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99820 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00180 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00203 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46969 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47058 * 119.99896 * 13 11 9 16 16 H 1.48498 * 109.47227 * 240.00341 * 13 11 9 17 17 C 1.52997 * 109.47079 * 239.99430 * 2 1 3 18 18 H 1.08995 * 109.47678 * 296.63414 * 17 2 1 19 19 C 1.52994 * 109.47173 * 176.63043 * 17 2 1 20 20 N 1.46899 * 109.46925 * 56.63001 * 17 2 1 21 21 C 1.47015 * 111.00121 * 191.09907 * 20 17 2 22 22 C 1.53106 * 109.25577 * 177.60985 * 21 20 17 23 23 O 1.43009 * 109.26107 * 56.85225 * 22 21 20 24 24 C 1.43026 * 113.73650 * 301.32647 * 23 22 21 25 25 C 1.47020 * 111.00168 * 67.46609 * 20 17 2 26 26 H 1.08996 * 109.47026 * 64.08777 * 1 2 3 27 27 H 1.08998 * 109.46809 * 184.09670 * 1 2 3 28 28 H 1.09006 * 109.46665 * 304.09478 * 1 2 3 29 29 H 0.97001 * 120.00778 * 94.99552 * 4 2 1 30 30 H 0.96998 * 120.00155 * 359.97438 * 7 5 4 31 31 H 1.09008 * 109.46846 * 299.99469 * 8 7 5 32 32 H 1.09001 * 109.47335 * 59.99166 * 8 7 5 33 33 H 0.97004 * 119.99972 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.47288 * 180.02562 * 19 17 2 35 35 H 1.09006 * 109.47382 * 300.00016 * 19 17 2 36 36 H 1.08995 * 109.47338 * 59.99940 * 19 17 2 37 37 H 1.08995 * 109.50453 * 297.53778 * 21 20 17 38 38 H 1.08993 * 109.50519 * 57.67643 * 21 20 17 39 39 H 1.08993 * 109.50515 * 296.91009 * 22 21 20 40 40 H 1.09001 * 109.53555 * 176.80989 * 22 21 20 41 41 H 1.09000 * 109.50244 * 298.73826 * 24 23 22 42 42 H 1.08994 * 109.53927 * 178.62988 * 24 23 22 43 43 H 1.08999 * 109.50179 * 302.32659 * 25 20 17 44 44 H 1.08991 * 109.50535 * 62.41173 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8575 1.1614 2.4118 7 7 2.5968 -0.6534 3.4575 8 6 2.7362 0.0773 4.7196 9 6 3.2539 -0.8543 5.7849 10 1 3.4583 -1.8876 5.5460 11 6 3.4667 -0.3877 7.0647 12 7 3.2184 0.8706 7.3557 13 14 4.1078 -1.5427 8.3855 14 1 4.3062 -2.8956 7.8062 15 1 5.4024 -1.0320 8.9038 16 1 3.1252 -1.6185 9.4963 17 6 2.0400 -0.7214 -1.2491 18 1 1.7269 -1.7649 -1.2195 19 6 3.5676 -0.6484 -1.2923 20 7 1.4850 -0.0776 -2.4472 21 6 1.7339 -0.8915 -3.6459 22 6 1.0889 -0.2149 -4.8585 23 8 1.6054 1.1123 -4.9885 24 6 1.3799 1.9330 -3.8390 25 6 2.0279 1.2782 -2.6162 26 1 -0.3633 0.4491 -0.9243 27 1 -0.3633 -1.0250 0.0734 28 1 -0.3633 0.5761 0.8511 29 1 2.2490 -1.6318 1.1528 30 1 2.8274 -1.5946 3.4140 31 1 3.4369 0.9017 4.5866 32 1 1.7653 0.4707 5.0209 33 1 3.3684 1.1990 8.2560 34 1 3.9309 -1.1619 -2.1824 35 1 3.8809 0.3953 -1.3221 36 1 3.9795 -1.1260 -0.4033 37 1 2.8080 -0.9815 -3.8081 38 1 1.3014 -1.8825 -3.5092 39 1 0.0086 -0.1732 -4.7200 40 1 1.3186 -0.7848 -5.7589 41 1 0.3080 2.0371 -3.6709 42 1 1.8202 2.9167 -4.0014 43 1 1.8099 1.8709 -1.7278 44 1 3.1067 1.2228 -2.7611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426435658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:23 Heat of formation + Delta-G solvation = -98.886628 kcal Electronic energy + Delta-G solvation = -23294.428780 eV Core-core repulsion = 19859.736135 eV Total energy + Delta-G solvation = -3434.692645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33524 -40.51956 -38.25134 -36.19667 -35.54302 -34.35249 -32.23888 -31.86218 -30.70850 -28.95506 -27.46695 -25.18799 -25.04323 -24.22851 -22.23309 -21.69423 -20.58813 -19.79735 -18.08840 -17.79017 -17.21915 -16.99049 -16.60231 -16.29731 -16.04734 -15.92326 -15.83248 -15.30567 -15.04239 -14.93982 -14.45625 -14.30296 -14.05061 -14.01694 -13.22539 -13.16411 -13.09374 -12.85816 -12.75261 -12.73634 -12.48416 -12.27933 -12.20903 -12.11889 -11.54895 -11.44034 -11.38162 -11.19508 -10.80921 -10.64100 -10.24140 -9.58780 -9.32668 -8.28017 -6.44284 1.43629 1.45223 1.58298 1.83510 2.28649 2.39211 2.79553 3.00329 3.07113 3.55178 3.60975 3.88391 3.98405 4.09669 4.13833 4.20524 4.31310 4.37266 4.43594 4.55324 4.64356 4.73456 4.77052 4.81603 4.88233 4.93772 4.95577 5.01956 5.04472 5.15268 5.22236 5.28223 5.37120 5.50581 5.62765 5.70836 5.86518 5.93085 5.98568 6.21417 6.29755 6.68176 7.25408 7.35277 7.76847 8.84627 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.043861 B = 0.002827 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.232423 B = 9902.168210 C =10093.320333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.171 3.829 3 H 0.056 0.944 4 N -0.725 5.725 5 C 0.694 3.306 6 O -0.648 6.648 7 N -0.724 5.724 8 C 0.287 3.713 9 C -0.553 4.553 10 H 0.084 0.916 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.986 3.014 14 H -0.253 1.253 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.088 3.912 18 H 0.109 0.891 19 C -0.182 4.182 20 N -0.525 5.525 21 C 0.018 3.982 22 C 0.061 3.939 23 O -0.406 6.406 24 C 0.066 3.934 25 C 0.010 3.990 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.021 0.979 29 H 0.409 0.591 30 H 0.404 0.596 31 H -0.016 1.016 32 H -0.016 1.016 33 H 0.268 0.732 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.115 0.885 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 -7.973 -24.748 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.065 3.935 3 H 0.075 0.925 4 N -0.383 5.383 5 C 0.393 3.607 6 O -0.531 6.531 7 N -0.378 5.378 8 C 0.163 3.837 9 C -0.590 4.590 10 H 0.102 0.898 11 C -0.197 4.197 12 N -0.570 5.570 13 Si 0.809 3.191 14 H -0.176 1.176 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.021 4.021 18 H 0.127 0.873 19 C -0.241 4.241 20 N -0.250 5.250 21 C -0.110 4.110 22 C -0.016 4.016 23 O -0.324 6.324 24 C -0.011 4.011 25 C -0.118 4.118 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.245 0.755 30 H 0.239 0.761 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.096 0.904 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.498 -6.674 -24.670 25.795 hybrid contribution 1.223 -0.691 1.268 1.892 sum -2.275 -7.365 -23.402 24.639 Atomic orbital electron populations 1.21984 0.94617 1.02120 1.01522 1.20675 0.94518 0.95780 0.82492 0.92549 1.44905 1.71784 1.13887 1.07701 1.16272 0.78334 0.84738 0.81333 1.90836 1.59623 1.17077 1.85563 1.45287 1.69199 1.14160 1.09107 1.18380 0.93905 0.91618 0.79787 1.21632 1.45330 0.97374 0.94713 0.89802 1.26076 0.95225 0.97029 1.01368 1.70155 1.48689 1.16585 1.21600 0.85093 0.77600 0.78770 0.77612 1.17591 1.20494 1.20470 1.21784 0.92603 0.99234 0.88472 0.87259 1.22407 0.96740 1.02006 1.02906 1.62336 1.57749 1.02306 1.02575 1.22877 0.99961 0.98313 0.89828 1.22829 0.98110 0.82521 0.98142 1.87960 1.80780 1.24422 1.39288 1.22702 1.00440 0.94151 0.83795 1.22874 0.98091 0.91103 0.99781 0.89558 0.91573 0.95926 0.75490 0.76052 0.99816 0.99821 0.92267 0.91038 0.93500 0.91750 0.93841 0.87687 0.91973 0.86715 0.91990 0.87588 0.90359 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.36 71.98 0.67 -2.92 16 2 C 0.17 4.34 1.89 44.99 0.08 4.42 16 3 H 0.06 1.79 6.14 -2.39 -0.01 1.78 16 4 N -0.73 -20.63 4.47 -457.80 -2.05 -22.68 16 5 C 0.69 29.03 8.53 179.05 1.53 30.56 16 6 O -0.65 -33.91 16.01 -4.00 -0.06 -33.97 16 7 N -0.72 -31.36 5.55 -482.28 -2.68 -34.04 16 8 C 0.29 16.06 5.43 85.63 0.46 16.53 16 9 C -0.55 -30.28 9.28 25.60 0.24 -30.04 16 10 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 11 C 0.00 0.14 5.46 84.65 0.46 0.60 16 12 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 13 Si 0.99 42.45 29.54 68.60 2.03 44.48 16 14 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 15 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 17 C 0.09 1.53 1.95 44.91 0.09 1.62 16 18 H 0.11 1.49 8.02 -2.39 -0.02 1.48 16 19 C -0.18 -3.27 8.28 71.98 0.60 -2.67 16 20 N -0.52 -8.61 3.69 -870.01 -3.21 -11.82 16 21 C 0.02 0.22 5.40 86.32 0.47 0.69 16 22 C 0.06 0.77 7.01 72.02 0.50 1.27 16 23 O -0.41 -7.39 10.83 -148.98 -1.61 -9.00 16 24 C 0.07 1.09 7.01 72.01 0.50 1.59 16 25 C 0.01 0.18 4.77 86.31 0.41 0.59 16 26 H 0.09 1.91 7.38 -2.39 -0.02 1.89 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.41 8.59 8.59 -92.71 -0.80 7.79 16 30 H 0.40 14.30 8.34 -92.71 -0.77 13.53 16 31 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 32 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 33 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.07 1.07 6.78 -2.39 -0.02 1.05 16 35 H 0.05 1.00 6.37 -2.38 -0.02 0.98 16 36 H 0.06 1.21 7.68 -2.39 -0.02 1.20 16 37 H 0.04 0.59 6.77 -2.39 -0.02 0.57 16 38 H 0.10 0.94 8.08 -2.39 -0.02 0.92 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.65 6.50 -2.39 -0.02 1.64 16 44 H 0.04 0.86 6.36 -2.39 -0.02 0.85 16 Total: -1.00 -74.48 347.08 -1.84 -76.32 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.56 Total: 24.91 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 6.02 Total: 22.23 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -7.64 Total: -124.97 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.68 Total: -42.97 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -74.48 -1.84 -76.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426435658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.568 kcal (2) G-P(sol) polarization free energy of solvation -74.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds