Wall clock time and date at job start Tue Mar 31 2020 03:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99506 * 2 1 4 4 C 1.50707 * 109.47204 * 293.95327 * 3 2 1 5 5 H 1.07998 * 119.99416 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00201 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99993 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99991 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47053 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47099 * 120.00121 * 8 6 4 11 11 H 1.48503 * 109.47094 * 239.99922 * 8 6 4 12 12 C 1.46894 * 111.00014 * 123.94873 * 2 1 3 13 13 C 1.52999 * 109.47143 * 164.01340 * 12 2 1 14 14 H 1.09010 * 109.47162 * 58.51003 * 13 12 2 15 15 O 1.42897 * 109.47295 * 298.51159 * 13 12 2 16 16 C 1.53000 * 109.47556 * 178.51036 * 13 12 2 17 17 N 1.46901 * 109.47380 * 185.00266 * 16 13 12 18 18 C 1.46899 * 110.99953 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.47018 * 179.97438 * 18 17 16 20 20 H 1.09011 * 109.90599 * 64.29969 * 19 18 17 21 21 C 1.53993 * 109.91702 * 185.39731 * 19 18 17 22 22 C 1.54599 * 105.13801 * 120.57783 * 21 19 18 23 23 C 1.54944 * 102.91908 * 21.96111 * 22 21 19 24 24 N 1.47893 * 109.91750 * 303.19606 * 19 18 17 25 25 C 1.46903 * 111.00224 * 94.80256 * 24 19 18 26 26 H 1.09000 * 109.47352 * 301.53143 * 1 2 3 27 27 H 1.08998 * 109.47273 * 61.53759 * 1 2 3 28 28 H 1.09011 * 109.47012 * 181.53706 * 1 2 3 29 29 H 1.09002 * 109.47773 * 53.95017 * 3 2 1 30 30 H 1.08997 * 109.47184 * 173.95136 * 3 2 1 31 31 H 0.97005 * 120.00543 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47295 * 44.01583 * 12 2 1 33 33 H 1.09005 * 109.47807 * 284.01281 * 12 2 1 34 34 H 0.96698 * 114.00134 * 299.99723 * 15 13 12 35 35 H 1.08993 * 109.46858 * 65.00024 * 16 13 12 36 36 H 1.09008 * 109.46937 * 305.00131 * 16 13 12 37 37 H 1.00904 * 110.99741 * 303.95263 * 17 16 13 38 38 H 1.09001 * 109.47291 * 299.99495 * 18 17 16 39 39 H 1.09001 * 109.47459 * 59.99555 * 18 17 16 40 40 H 1.08998 * 110.31117 * 239.49329 * 21 19 18 41 41 H 1.08994 * 110.30707 * 1.66597 * 21 19 18 42 42 H 1.09001 * 110.72098 * 140.31339 * 22 21 19 43 43 H 1.08997 * 110.72611 * 263.60164 * 22 21 19 44 44 H 1.09001 * 110.67018 * 81.02293 * 23 22 21 45 45 H 1.08999 * 110.66486 * 204.15118 * 23 22 21 46 46 H 1.09001 * 109.47083 * 59.99833 * 25 24 19 47 47 H 1.09000 * 109.47410 * 179.97438 * 25 24 19 48 48 H 1.08995 * 109.46877 * 299.99910 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5111 -2.0488 6 6 2.0274 3.3492 -1.5290 7 7 2.7124 4.0016 -0.6155 8 14 1.5835 4.1864 -3.1388 9 1 0.8163 3.2437 -3.9919 10 1 0.7565 5.3879 -2.8603 11 1 2.8255 4.5930 -3.8441 12 6 1.9954 -0.7658 1.1376 13 6 3.4728 -1.0838 0.8985 14 1 4.0282 -0.1547 0.7698 15 8 3.6035 -1.8837 -0.2784 16 6 4.0308 -1.8492 2.0999 17 7 5.4755 -2.0498 1.9248 18 6 6.0467 -2.7838 3.0619 19 6 7.5491 -2.9735 2.8435 20 1 8.0484 -2.0044 2.8366 21 6 8.1342 -3.8570 3.9609 22 6 8.7412 -5.0787 3.2334 23 6 8.9681 -4.5481 1.7954 24 7 7.7877 -3.6724 1.5622 25 6 8.0440 -2.7135 0.4792 26 1 -0.3634 0.5374 0.8759 27 1 -0.3634 0.4898 -0.9034 28 1 -0.3633 -1.0274 0.0276 29 1 1.5609 1.9275 0.8309 30 1 3.0796 1.3445 0.1083 31 1 2.9876 4.9176 -0.7777 32 1 1.4357 -1.6955 1.2399 33 1 1.8934 -0.1780 2.0499 34 1 3.1335 -2.7277 -0.2345 35 1 3.5361 -2.8175 2.1754 36 1 3.8511 -1.2774 3.0104 37 1 5.6722 -2.5215 1.0548 38 1 5.8811 -2.2188 3.9792 39 1 5.5659 -3.7586 3.1437 40 1 8.9095 -3.3164 4.5038 41 1 7.3460 -4.1759 4.6427 42 1 9.6869 -5.3693 3.6910 43 1 8.0402 -5.9133 3.2304 44 1 9.8902 -3.9694 1.7399 45 1 8.9851 -5.3704 1.0802 46 1 8.9242 -2.1181 0.7217 47 1 8.2166 -3.2540 -0.4515 48 1 7.1817 -2.0568 0.3638 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518759523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:27 Heat of formation + Delta-G solvation = -38.033253 kcal Electronic energy + Delta-G solvation = -23370.031905 eV Core-core repulsion = 20073.811155 eV Total energy + Delta-G solvation = -3296.220750 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 285.216 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.48841 -38.03484 -35.80344 -34.63661 -32.42857 -32.38669 -30.76683 -28.89138 -27.24318 -26.09570 -25.46977 -23.79591 -22.80145 -21.58096 -21.18225 -20.21228 -19.91548 -16.85514 -16.42415 -16.09947 -15.74551 -15.58897 -14.92609 -14.64664 -14.53083 -14.28927 -13.86432 -13.68854 -13.40288 -13.21247 -13.02329 -12.89379 -12.51488 -12.31165 -11.92583 -11.73794 -11.57530 -11.46577 -11.32563 -11.17141 -11.03600 -11.00023 -10.88807 -10.77751 -10.60723 -10.57493 -10.28397 -9.68907 -9.50692 -9.06082 -8.63925 -8.36565 -8.27753 -7.14352 -5.95882 -3.96031 3.35858 3.42964 3.48429 3.80279 4.06479 4.44804 4.47643 4.53703 4.72831 4.84356 4.98915 5.06399 5.16141 5.26702 5.35185 5.38275 5.39765 5.40443 5.49711 5.50107 5.54331 5.57312 5.64914 5.68316 5.76849 5.82050 5.84828 5.90028 5.99512 6.08600 6.11088 6.14352 6.38651 6.62067 6.70290 6.76023 6.88130 7.12146 7.36169 7.38039 7.57290 7.86790 8.13535 8.19460 8.28161 8.62586 9.11368 9.67508 11.15280 Molecular weight = 285.22amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.003098 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.711770 B = 9036.762723 C = 9624.379015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.191 3.809 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.027 3.973 13 C 0.115 3.885 14 H 0.111 0.889 15 O -0.541 6.541 16 C 0.030 3.970 17 N -0.686 5.686 18 C 0.076 3.924 19 C 0.065 3.935 20 H 0.061 0.939 21 C -0.127 4.127 22 C -0.123 4.123 23 C 0.033 3.967 24 N -0.520 5.520 25 C 0.009 3.991 26 H 0.009 0.991 27 H 0.073 0.927 28 H 0.042 0.958 29 H -0.012 1.012 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.359 0.641 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.355 0.645 38 H 0.069 0.931 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.026 0.974 47 H 0.066 0.934 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.701 -17.971 9.525 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.255 5.255 3 C 0.066 3.934 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.103 4.103 13 C 0.055 3.945 14 H 0.129 0.871 15 O -0.344 6.344 16 C -0.100 4.100 17 N -0.321 5.321 18 C -0.054 4.054 19 C -0.044 4.044 20 H 0.079 0.921 21 C -0.166 4.166 22 C -0.161 4.161 23 C -0.095 4.095 24 N -0.244 5.244 25 C -0.139 4.139 26 H 0.028 0.972 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.006 0.994 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.204 0.796 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.178 0.822 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.045 0.955 47 H 0.085 0.915 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.003 -17.180 8.996 21.821 hybrid contribution -0.432 0.225 0.299 0.571 sum 9.571 -16.955 9.295 21.575 Atomic orbital electron populations 1.22195 0.88973 0.98802 1.00887 1.62044 1.06408 1.17883 1.39186 1.19791 0.95643 0.81436 0.96488 1.21190 1.34430 0.96752 1.01668 0.91889 1.24986 0.95404 0.97405 0.96939 1.69969 1.38618 1.11359 1.34015 0.86456 0.78125 0.79226 0.83699 1.19684 1.21232 1.21020 1.22661 0.95899 0.98081 0.93650 1.21994 0.94656 0.94598 0.83238 0.87100 1.86689 1.75214 1.33254 1.39250 1.22665 0.88406 0.98805 1.00149 1.60544 1.12120 1.53545 1.05849 1.21942 0.92995 0.95981 0.94453 1.22459 0.96229 0.96492 0.89222 0.92060 1.22433 1.00377 0.96259 0.97510 1.22469 1.00792 0.97972 0.94891 1.23285 0.92129 0.96981 0.97069 1.64667 1.35560 1.19432 1.04744 1.22712 1.01534 0.95432 0.94272 0.97207 0.90817 0.93957 0.99439 0.94883 0.93080 0.92342 0.95148 0.79596 0.95511 0.90670 0.82241 0.91214 0.95046 0.91372 0.90847 0.91184 0.90833 0.93816 0.90146 0.95526 0.91502 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.32 60.06 0.56 1.36 16 2 N -0.53 -11.76 4.60 -244.37 -1.12 -12.88 16 3 C 0.19 5.13 4.57 -4.97 -0.02 5.10 16 4 C -0.50 -14.54 8.54 -34.44 -0.29 -14.83 16 5 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 8 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 C 0.03 0.48 4.63 -3.83 -0.02 0.46 16 13 C 0.12 1.95 3.23 -26.73 -0.09 1.86 16 14 H 0.11 2.30 6.56 -51.92 -0.34 1.96 16 15 O -0.54 -9.31 12.75 -35.23 -0.45 -9.76 16 16 C 0.03 0.41 5.36 -3.82 -0.02 0.38 16 17 N -0.69 -9.14 5.85 -113.78 -0.67 -9.80 16 18 C 0.08 0.85 5.20 -3.82 -0.02 0.83 16 19 C 0.06 0.67 2.84 -66.65 -0.19 0.48 16 20 H 0.06 0.70 7.73 -51.92 -0.40 0.30 16 21 C -0.13 -1.02 6.57 -25.37 -0.17 -1.19 16 22 C -0.12 -0.91 7.07 -24.86 -0.18 -1.09 16 23 C 0.03 0.28 6.58 -1.74 -0.01 0.27 16 24 N -0.52 -5.48 4.80 -230.54 -1.11 -6.59 16 25 C 0.01 0.10 8.94 60.07 0.54 0.64 16 26 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 27 H 0.07 1.57 6.90 -51.93 -0.36 1.21 16 28 H 0.04 0.71 7.97 -51.92 -0.41 0.29 16 29 H -0.01 -0.35 8.11 -51.93 -0.42 -0.77 16 30 H 0.03 0.95 6.38 -51.93 -0.33 0.62 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 33 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16 34 H 0.36 4.76 9.05 45.56 0.41 5.18 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.36 4.92 5.55 -39.29 -0.22 4.70 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.55 7.68 -51.93 -0.40 0.15 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.04 0.37 7.97 -51.93 -0.41 -0.05 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.03 0.28 8.01 -51.93 -0.42 -0.13 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 1.16 5.69 -51.93 -0.30 0.87 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -31.61 370.80 -10.21 -41.81 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.16 Total: 5.28 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 0.00 Total: -4.25 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -2.16 Total: -55.87 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.45 Total: -9.76 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.61 -10.21 -41.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518759523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.781 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds