Wall clock time and date at job start Tue Mar 31 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99506 * 2 1 4 4 C 1.50707 * 109.47204 * 293.95327 * 3 2 1 5 5 H 1.07998 * 119.99416 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00201 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99993 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99991 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47053 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47099 * 120.00121 * 8 6 4 11 11 H 1.48503 * 109.47094 * 239.99922 * 8 6 4 12 12 C 1.46894 * 111.00014 * 123.94873 * 2 1 3 13 13 C 1.52999 * 109.47143 * 164.01340 * 12 2 1 14 14 H 1.09010 * 109.47162 * 58.51003 * 13 12 2 15 15 O 1.42897 * 109.47295 * 298.51159 * 13 12 2 16 16 C 1.53000 * 109.47556 * 178.51036 * 13 12 2 17 17 N 1.46901 * 109.47380 * 185.00266 * 16 13 12 18 18 C 1.46899 * 110.99953 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.47018 * 179.97438 * 18 17 16 20 20 H 1.09011 * 109.90599 * 64.29969 * 19 18 17 21 21 C 1.53993 * 109.91702 * 185.39731 * 19 18 17 22 22 C 1.54599 * 105.13801 * 120.57783 * 21 19 18 23 23 C 1.54944 * 102.91908 * 21.96111 * 22 21 19 24 24 N 1.47893 * 109.91750 * 303.19606 * 19 18 17 25 25 C 1.46903 * 111.00224 * 94.80256 * 24 19 18 26 26 H 1.09000 * 109.47352 * 301.53143 * 1 2 3 27 27 H 1.08998 * 109.47273 * 61.53759 * 1 2 3 28 28 H 1.09011 * 109.47012 * 181.53706 * 1 2 3 29 29 H 1.09002 * 109.47773 * 53.95017 * 3 2 1 30 30 H 1.08997 * 109.47184 * 173.95136 * 3 2 1 31 31 H 0.97005 * 120.00543 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47295 * 44.01583 * 12 2 1 33 33 H 1.09005 * 109.47807 * 284.01281 * 12 2 1 34 34 H 0.96698 * 114.00134 * 299.99723 * 15 13 12 35 35 H 1.08993 * 109.46858 * 65.00024 * 16 13 12 36 36 H 1.09008 * 109.46937 * 305.00131 * 16 13 12 37 37 H 1.00904 * 110.99741 * 303.95263 * 17 16 13 38 38 H 1.09001 * 109.47291 * 299.99495 * 18 17 16 39 39 H 1.09001 * 109.47459 * 59.99555 * 18 17 16 40 40 H 1.08998 * 110.31117 * 239.49329 * 21 19 18 41 41 H 1.08994 * 110.30707 * 1.66597 * 21 19 18 42 42 H 1.09001 * 110.72098 * 140.31339 * 22 21 19 43 43 H 1.08997 * 110.72611 * 263.60164 * 22 21 19 44 44 H 1.09001 * 110.67018 * 81.02293 * 23 22 21 45 45 H 1.08999 * 110.66486 * 204.15118 * 23 22 21 46 46 H 1.09001 * 109.47083 * 59.99833 * 25 24 19 47 47 H 1.09000 * 109.47410 * 179.97438 * 25 24 19 48 48 H 1.08995 * 109.46877 * 299.99910 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5111 -2.0488 6 6 2.0274 3.3492 -1.5290 7 7 2.7124 4.0016 -0.6155 8 14 1.5835 4.1864 -3.1388 9 1 0.8163 3.2437 -3.9919 10 1 0.7565 5.3879 -2.8603 11 1 2.8255 4.5930 -3.8441 12 6 1.9954 -0.7658 1.1376 13 6 3.4728 -1.0838 0.8985 14 1 4.0282 -0.1547 0.7698 15 8 3.6035 -1.8837 -0.2784 16 6 4.0308 -1.8492 2.0999 17 7 5.4755 -2.0498 1.9248 18 6 6.0467 -2.7838 3.0619 19 6 7.5491 -2.9735 2.8435 20 1 8.0484 -2.0044 2.8366 21 6 8.1342 -3.8570 3.9609 22 6 8.7412 -5.0787 3.2334 23 6 8.9681 -4.5481 1.7954 24 7 7.7877 -3.6724 1.5622 25 6 8.0440 -2.7135 0.4792 26 1 -0.3634 0.5374 0.8759 27 1 -0.3634 0.4898 -0.9034 28 1 -0.3633 -1.0274 0.0276 29 1 1.5609 1.9275 0.8309 30 1 3.0796 1.3445 0.1083 31 1 2.9876 4.9176 -0.7777 32 1 1.4357 -1.6955 1.2399 33 1 1.8934 -0.1780 2.0499 34 1 3.1335 -2.7277 -0.2345 35 1 3.5361 -2.8175 2.1754 36 1 3.8511 -1.2774 3.0104 37 1 5.6722 -2.5215 1.0548 38 1 5.8811 -2.2188 3.9792 39 1 5.5659 -3.7586 3.1437 40 1 8.9095 -3.3164 4.5038 41 1 7.3460 -4.1759 4.6427 42 1 9.6869 -5.3693 3.6910 43 1 8.0402 -5.9133 3.2304 44 1 9.8902 -3.9694 1.7399 45 1 8.9851 -5.3704 1.0802 46 1 8.9242 -2.1181 0.7217 47 1 8.2166 -3.2540 -0.4515 48 1 7.1817 -2.0568 0.3638 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518759523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:26 Heat of formation + Delta-G solvation = -64.171044 kcal Electronic energy + Delta-G solvation = -23371.165325 eV Core-core repulsion = 20073.811155 eV Total energy + Delta-G solvation = -3297.354170 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 285.216 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.30089 -39.42725 -37.35015 -35.80155 -34.60044 -33.12651 -31.86463 -30.12106 -29.24715 -27.16170 -26.54758 -25.43111 -24.06756 -22.84980 -21.92182 -21.68929 -20.96861 -18.61887 -17.78261 -17.34367 -16.90575 -16.58713 -16.51533 -16.02464 -15.90213 -15.60731 -15.19321 -14.86132 -14.60376 -14.49262 -14.08908 -13.91028 -13.85056 -13.70158 -13.24674 -13.13059 -12.90889 -12.69371 -12.58261 -12.54829 -12.37894 -12.29867 -12.17389 -12.10984 -11.83260 -11.80539 -11.48037 -11.45138 -11.29273 -10.72703 -10.60327 -9.48379 -9.25650 -8.94879 -8.19593 -6.29003 1.39604 1.41238 1.54701 2.40833 2.96248 3.05474 3.13047 3.43869 3.72111 3.76740 3.81944 4.01971 4.05960 4.16012 4.29104 4.35157 4.38210 4.45060 4.49787 4.54863 4.59051 4.61353 4.65214 4.76196 4.77949 4.78395 4.80827 4.91847 4.97623 5.07606 5.08388 5.11216 5.13925 5.24120 5.27084 5.31745 5.32332 5.65738 5.92287 6.05685 6.07215 6.16335 6.35696 6.51881 6.65696 6.87020 7.05102 7.40226 8.91894 Molecular weight = 285.22amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.003098 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.711770 B = 9036.762723 C = 9624.379015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.028 3.972 13 C 0.125 3.875 14 H 0.062 0.938 15 O -0.559 6.559 16 C 0.043 3.957 17 N -0.701 5.701 18 C 0.079 3.921 19 C 0.063 3.937 20 H 0.044 0.956 21 C -0.124 4.124 22 C -0.117 4.117 23 C 0.030 3.970 24 N -0.529 5.529 25 C 0.014 3.986 26 H 0.008 0.992 27 H 0.054 0.946 28 H 0.083 0.917 29 H -0.042 1.042 30 H 0.004 0.996 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.027 0.973 34 H 0.378 0.622 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.352 0.648 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.025 0.975 47 H 0.073 0.927 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.381 -19.884 9.652 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.083 3.917 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.205 1.205 12 C -0.101 4.101 13 C 0.065 3.935 14 H 0.081 0.919 15 O -0.365 6.365 16 C -0.087 4.087 17 N -0.335 5.335 18 C -0.050 4.050 19 C -0.046 4.046 20 H 0.062 0.938 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.098 4.098 24 N -0.253 5.253 25 C -0.134 4.134 26 H 0.026 0.974 27 H 0.073 0.927 28 H 0.101 0.899 29 H -0.024 1.024 30 H 0.022 0.978 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.045 0.955 34 H 0.226 0.774 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.174 0.826 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.043 0.957 47 H 0.091 0.909 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.672 -19.128 9.137 23.300 hybrid contribution -0.320 0.764 0.276 0.873 sum 9.352 -18.365 9.413 22.656 Atomic orbital electron populations 1.22221 0.87459 1.01134 0.99872 1.61945 1.07886 1.15140 1.41645 1.19392 0.93782 0.83877 0.94695 1.21500 1.34590 0.97411 1.02395 0.92122 1.25936 0.95086 0.98130 1.00755 1.70098 1.39493 1.11844 1.36167 0.85331 0.78066 0.78202 0.79000 1.18738 1.20196 1.20476 1.22779 0.96730 0.98792 0.91846 1.21706 0.93685 0.93458 0.84659 0.91948 1.86641 1.75806 1.34429 1.39581 1.22464 0.88759 0.99303 0.98156 1.60533 1.12066 1.54436 1.06500 1.21977 0.93474 0.95917 0.93642 1.22465 0.95622 0.96310 0.90155 0.93795 1.22431 1.00808 0.96142 0.96841 1.22469 1.01683 0.97531 0.93833 1.23372 0.91388 0.96759 0.98234 1.64665 1.36713 1.19321 1.04611 1.22603 1.00418 0.95398 0.95027 0.97366 0.92690 0.89854 1.02447 0.97798 0.92758 0.88481 0.95513 0.77397 0.93074 0.90510 0.82645 0.90827 0.94458 0.90562 0.90011 0.89407 0.90660 0.93722 0.89568 0.95680 0.90859 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.32 127.69 1.19 2.79 16 2 N -0.54 -24.08 4.60 -927.04 -4.27 -28.35 16 3 C 0.21 11.65 4.57 85.56 0.39 12.04 16 4 C -0.52 -30.87 8.54 25.60 0.22 -30.65 16 5 H 0.06 3.55 7.10 -2.91 -0.02 3.53 16 6 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 7 N -0.94 -58.28 13.29 21.45 0.28 -58.00 16 8 Si 0.97 45.95 29.54 68.60 2.03 47.97 16 9 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 C 0.03 0.96 4.63 86.30 0.40 1.36 16 13 C 0.13 4.28 3.23 30.59 0.10 4.37 16 14 H 0.06 2.76 6.56 -2.38 -0.02 2.75 16 15 O -0.56 -19.02 12.75 -148.98 -1.90 -20.92 16 16 C 0.04 1.13 5.36 86.30 0.46 1.59 16 17 N -0.70 -18.59 5.85 -513.88 -3.01 -21.60 16 18 C 0.08 1.69 5.20 86.30 0.45 2.14 16 19 C 0.06 1.26 2.84 45.06 0.13 1.39 16 20 H 0.04 1.01 7.73 -2.38 -0.02 1.00 16 21 C -0.12 -1.75 6.57 31.47 0.21 -1.54 16 22 C -0.12 -1.46 7.07 31.80 0.22 -1.24 16 23 C 0.03 0.47 6.58 86.60 0.57 1.04 16 24 N -0.53 -10.77 4.80 -883.29 -4.24 -15.02 16 25 C 0.01 0.32 8.94 127.69 1.14 1.46 16 26 H 0.01 0.31 8.13 -2.39 -0.02 0.29 16 27 H 0.05 2.31 6.90 -2.39 -0.02 2.30 16 28 H 0.08 2.54 7.97 -2.38 -0.02 2.52 16 29 H -0.04 -2.54 8.11 -2.39 -0.02 -2.55 16 30 H 0.00 0.24 6.38 -2.39 -0.02 0.23 16 31 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 32 H 0.10 2.65 7.88 -2.39 -0.02 2.63 16 33 H 0.03 0.96 8.05 -2.38 -0.02 0.94 16 34 H 0.38 9.34 9.05 -74.06 -0.67 8.67 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.35 9.78 5.55 -89.69 -0.50 9.28 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.03 7.68 -2.39 -0.02 1.02 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.04 0.69 7.97 -2.39 -0.02 0.68 16 45 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.02 0.54 8.01 -2.39 -0.02 0.53 16 47 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.07 1.85 5.69 -2.39 -0.01 1.84 16 Total: -1.00 -69.96 370.80 -5.40 -75.36 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.24 Total: 25.41 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.94 Total: -4.88 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -11.23 Total: -122.95 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -1.90 Total: -20.92 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -69.96 -5.40 -75.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518759523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.190 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds