Wall clock time and date at job start Tue Mar 31 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47372 * 2 1 4 4 C 1.53001 * 109.47229 * 239.99989 * 2 1 3 5 5 O 1.45202 * 109.47334 * 119.99991 * 2 1 3 6 6 C 1.34634 * 116.99778 * 59.99777 * 5 2 1 7 7 O 1.21512 * 120.00089 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99883 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99803 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46809 * 205.00239 * 9 8 6 11 11 C 1.53000 * 109.47035 * 299.99802 * 10 9 8 12 12 C 1.53003 * 109.47236 * 300.00466 * 11 10 9 13 13 O 1.42899 * 109.47035 * 299.99859 * 12 11 10 14 14 C 1.50703 * 109.47319 * 179.97438 * 12 11 10 15 15 H 1.08003 * 119.99761 * 355.46240 * 14 12 11 16 16 C 1.37878 * 120.00164 * 175.45885 * 14 12 11 17 17 N 1.31514 * 119.99692 * 2.12679 * 16 14 12 18 18 Si 1.86798 * 120.00048 * 181.85632 * 16 14 12 19 19 H 1.48496 * 109.47129 * 84.98787 * 18 16 14 20 20 H 1.48498 * 109.47017 * 204.99282 * 18 16 14 21 21 H 1.48510 * 109.46684 * 324.98863 * 18 16 14 22 22 C 1.52998 * 109.47328 * 60.00041 * 12 11 10 23 23 C 1.53003 * 109.47003 * 85.00054 * 9 8 6 24 24 H 1.09000 * 109.47406 * 300.00029 * 1 2 3 25 25 H 1.09000 * 109.46925 * 60.00261 * 1 2 3 26 26 H 1.08994 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47308 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47135 * 300.00505 * 3 2 1 29 29 H 1.09000 * 109.46879 * 59.99648 * 3 2 1 30 30 H 1.08994 * 109.47106 * 299.99926 * 4 2 1 31 31 H 1.08996 * 109.46969 * 60.00255 * 4 2 1 32 32 H 1.09009 * 109.47112 * 179.97438 * 4 2 1 33 33 H 0.97000 * 120.00057 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47236 * 324.99788 * 9 8 6 35 35 H 1.09003 * 109.46699 * 180.02562 * 10 9 8 36 36 H 1.08989 * 109.47247 * 60.00044 * 10 9 8 37 37 H 1.09001 * 109.47540 * 180.02562 * 11 10 9 38 38 H 1.08999 * 109.47046 * 60.00086 * 11 10 9 39 39 H 0.96703 * 113.99959 * 173.89069 * 13 12 11 40 40 H 0.97005 * 119.99788 * 179.72635 * 17 16 14 41 41 H 1.08999 * 109.47436 * 59.99551 * 22 12 11 42 42 H 1.08996 * 109.47356 * 180.02562 * 22 12 11 43 43 H 1.08999 * 109.46793 * 179.97438 * 23 9 8 44 44 H 1.08994 * 109.46742 * 299.99790 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5096 0.5036 8 7 2.0672 -2.6654 2.4172 9 6 1.6740 -4.0669 2.5831 10 6 1.7065 -4.4332 4.0683 11 6 3.1225 -4.2330 4.6121 12 6 4.0954 -5.1300 3.8441 13 8 3.7118 -6.4970 4.0059 14 6 5.4902 -4.9324 4.3793 15 1 5.6775 -4.1843 5.1355 16 6 6.5273 -5.7065 3.9037 17 7 6.3072 -6.5885 2.9533 18 14 8.2463 -5.4974 4.6040 19 1 8.3838 -6.3201 5.8326 20 1 9.2471 -5.9373 3.5990 21 1 8.4746 -4.0683 4.9371 22 6 4.0629 -4.7636 2.3590 23 6 2.6469 -4.9639 1.8151 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1301 -0.7208 -1.2495 33 1 2.6263 -2.2363 3.0837 34 1 0.6652 -4.2095 2.1957 35 1 1.4143 -5.4761 4.1917 36 1 1.0135 -3.7942 4.6153 37 1 3.1458 -4.4944 5.6700 38 1 3.4150 -3.1903 4.4886 39 1 4.2275 -7.1162 3.4713 40 1 7.0376 -7.1304 2.6159 41 1 4.3554 -3.7209 2.2355 42 1 4.7556 -5.4029 1.8118 43 1 2.3546 -6.0066 1.9389 44 1 2.6237 -4.7028 0.7571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575441413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:57 Heat of formation + Delta-G solvation = -170.059647 kcal Electronic energy + Delta-G solvation = -24470.233021 eV Core-core repulsion = 21000.161331 eV Total energy + Delta-G solvation = -3470.071690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.85852 -40.23994 -38.11658 -36.41116 -35.08652 -34.05353 -33.21905 -31.56442 -30.22638 -28.32388 -28.25640 -26.80666 -24.01891 -23.40988 -22.29498 -21.08746 -19.89059 -19.24102 -18.84496 -17.48535 -17.16034 -16.92990 -16.68776 -15.96459 -15.71837 -15.44452 -15.30023 -14.94396 -14.47039 -14.24010 -14.06986 -13.78808 -13.35803 -13.26810 -13.12688 -12.93754 -12.86907 -12.82106 -12.81637 -12.56512 -12.47482 -12.28119 -12.21434 -12.06001 -11.91723 -11.53934 -11.40141 -11.32264 -11.03576 -10.86118 -10.50051 -10.02589 -9.84080 -8.12827 -6.29354 1.27587 1.40548 1.42899 1.50480 1.85577 2.41252 3.09677 3.25238 3.80109 3.84327 3.89527 3.99207 4.00353 4.12269 4.42347 4.53642 4.56188 4.56410 4.64976 4.70642 4.78277 4.79756 4.86221 4.88502 4.91242 4.93824 4.97073 5.14392 5.16484 5.26451 5.32558 5.35271 5.42485 5.44528 5.56784 5.62416 5.68811 5.82131 6.10267 6.27817 6.51822 6.76807 7.42234 7.43064 7.60061 8.88237 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.004565 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.183424 B = 6132.019070 C = 6697.420161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.122 3.878 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.373 6.373 6 C 0.647 3.353 7 O -0.593 6.593 8 N -0.692 5.692 9 C 0.176 3.824 10 C -0.110 4.110 11 C -0.096 4.096 12 C 0.242 3.758 13 O -0.593 6.593 14 C -0.560 4.560 15 H 0.053 0.947 16 C 0.029 3.971 17 N -0.914 5.914 18 Si 0.951 3.049 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.118 4.118 23 C -0.118 4.118 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.409 0.591 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.371 0.629 40 H 0.266 0.734 41 H 0.036 0.964 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.619 12.971 -4.743 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.086 3.914 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.288 6.288 6 C 0.400 3.600 7 O -0.485 6.485 8 N -0.352 5.352 9 C 0.073 3.927 10 C -0.148 4.148 11 C -0.133 4.133 12 C 0.203 3.797 13 O -0.402 6.402 14 C -0.598 4.598 15 H 0.071 0.929 16 C -0.171 4.171 17 N -0.555 5.555 18 Si 0.778 3.222 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.157 4.157 23 C -0.157 4.157 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.246 0.754 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.221 0.779 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.313 12.924 -4.885 17.241 hybrid contribution 1.996 -0.455 0.034 2.047 sum -8.317 12.469 -4.851 15.754 Atomic orbital electron populations 1.22451 0.93566 1.03724 1.03664 1.22429 0.94922 0.92671 0.81382 1.21884 1.02197 0.90663 1.04455 1.22481 1.01280 1.02292 0.97760 1.86321 1.71755 1.23255 1.47466 1.18236 0.78715 0.80711 0.82332 1.90851 1.42736 1.71063 1.43841 1.44956 1.54705 1.12342 1.23178 1.20867 0.97829 0.77419 0.96604 1.21704 0.97321 1.02871 0.92884 1.21428 0.94128 0.98452 0.99320 1.18750 0.90681 0.79799 0.90454 1.86073 1.63479 1.19129 1.71496 1.22148 0.95079 1.19800 1.22773 0.92921 1.25622 1.02223 0.94749 0.94486 1.69656 1.33592 1.24328 1.27909 0.85680 0.80003 0.78412 0.78111 1.20401 1.21027 1.19599 1.21898 0.94927 0.99462 0.99401 1.21818 0.96332 0.99595 0.97944 0.91761 0.88909 0.92001 0.91721 0.87686 0.90993 0.92180 0.88745 0.92708 0.75388 0.89561 0.90175 0.89678 0.92763 0.91507 0.77924 0.92483 0.94550 0.92802 0.91499 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.77 8.37 71.98 0.60 -3.17 16 2 C 0.12 2.83 1.13 -10.79 -0.01 2.82 16 3 C -0.14 -2.18 8.85 71.98 0.64 -1.54 16 4 C -0.18 -4.34 8.37 71.98 0.60 -3.74 16 5 O -0.37 -11.00 9.94 -55.43 -0.55 -11.55 16 6 C 0.65 21.45 8.02 129.79 1.04 22.49 16 7 O -0.59 -21.71 11.54 19.80 0.23 -21.48 16 8 N -0.69 -22.06 4.24 -570.10 -2.42 -24.48 16 9 C 0.18 5.86 2.78 44.99 0.13 5.98 16 10 C -0.11 -3.51 5.46 30.60 0.17 -3.35 16 11 C -0.10 -3.66 4.71 30.60 0.14 -3.52 16 12 C 0.24 11.39 0.66 -11.54 -0.01 11.38 16 13 O -0.59 -29.63 11.57 -148.98 -1.72 -31.35 16 14 C -0.56 -29.52 8.22 25.60 0.21 -29.31 16 15 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 16 C 0.03 1.51 5.25 84.66 0.44 1.95 16 17 N -0.91 -49.13 9.79 21.45 0.21 -48.92 16 18 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 C -0.12 -5.39 4.53 30.59 0.14 -5.25 16 23 C -0.12 -4.64 5.46 30.60 0.17 -4.47 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.69 5.88 -2.39 -0.01 1.68 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.82 5.88 -2.39 -0.01 1.81 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.41 12.27 6.98 -92.71 -0.65 11.62 16 34 H 0.09 2.81 7.58 -2.39 -0.02 2.79 16 35 H 0.08 2.70 7.68 -2.39 -0.02 2.68 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.07 2.36 6.51 -2.39 -0.02 2.35 16 39 H 0.37 19.56 6.99 -74.05 -0.52 19.04 16 40 H 0.27 13.75 8.31 -92.70 -0.77 12.98 16 41 H 0.04 1.65 7.60 -2.39 -0.02 1.63 16 42 H 0.05 2.80 6.36 -2.39 -0.02 2.78 16 43 H 0.07 2.67 7.68 -2.39 -0.02 2.65 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -59.87 336.36 1.87 -58.00 By element: Atomic # 1 Polarization: 45.20 SS G_CDS: -0.16 Total: 45.04 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 4.26 Total: -9.70 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -2.21 Total: -73.40 kcal Atomic # 8 Polarization: -62.33 SS G_CDS: -2.05 Total: -64.38 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -59.87 1.87 -58.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575441413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.063 kcal (2) G-P(sol) polarization free energy of solvation -59.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds