Wall clock time and date at job start Tue Mar 31 2020 02:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46692 * 2 1 4 4 C 1.52998 * 109.47407 * 59.99986 * 3 2 1 5 5 C 1.53005 * 109.46749 * 65.40329 * 4 3 2 6 6 C 1.53000 * 109.47422 * 300.00123 * 3 2 1 7 7 O 1.42909 * 109.47190 * 300.00473 * 6 3 2 8 8 C 1.50705 * 109.47153 * 180.02562 * 3 2 1 9 9 O 1.21279 * 119.99560 * 350.61575 * 8 3 2 10 10 N 1.34773 * 120.00282 * 170.33612 * 8 3 2 11 11 C 1.47422 * 125.64595 * 4.13635 * 10 8 3 12 12 C 1.55129 * 104.72565 * 155.81506 * 11 10 8 13 13 C 1.55164 * 101.48362 * 37.29429 * 12 11 10 14 14 O 1.42892 * 110.71725 * 82.69571 * 13 12 11 15 15 C 1.50696 * 110.87091 * 205.90310 * 13 12 11 16 16 H 1.08003 * 119.99917 * 113.61242 * 15 13 12 17 17 C 1.37872 * 119.99943 * 293.60304 * 15 13 12 18 18 N 1.31508 * 120.00183 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 120.00100 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46969 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47206 * 120.00301 * 19 17 15 22 22 H 1.48499 * 109.47239 * 240.00391 * 19 17 15 23 23 C 1.47019 * 125.64864 * 184.44292 * 10 8 3 24 24 H 1.08992 * 109.47574 * 60.00047 * 1 2 3 25 25 H 1.09004 * 109.46369 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47205 * 299.99630 * 1 2 3 27 27 H 1.09000 * 109.47205 * 240.00370 * 2 1 3 28 28 H 1.08992 * 109.47574 * 119.99953 * 2 1 3 29 29 H 1.08993 * 109.47315 * 185.40050 * 4 3 2 30 30 H 1.08999 * 109.47124 * 305.40200 * 4 3 2 31 31 H 1.09002 * 109.47065 * 300.00030 * 5 4 3 32 32 H 1.08999 * 109.47413 * 60.00048 * 5 4 3 33 33 H 1.09000 * 109.47140 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.47231 * 59.99530 * 6 3 2 35 35 H 1.08994 * 109.47649 * 179.97438 * 6 3 2 36 36 H 0.96696 * 113.99897 * 179.97438 * 7 6 3 37 37 H 1.08996 * 110.37180 * 274.74869 * 11 10 8 38 38 H 1.09009 * 110.37124 * 37.06917 * 11 10 8 39 39 H 1.09007 * 111.19330 * 279.19455 * 12 11 10 40 40 H 1.08995 * 110.94346 * 155.28913 * 12 11 10 41 41 H 0.96702 * 114.00319 * 66.48138 * 14 13 12 42 42 H 0.97004 * 120.00689 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.88309 * 300.43930 * 23 10 8 44 44 H 1.08998 * 109.88001 * 61.60890 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5299 2.1638 1.2492 5 6 2.1479 1.5253 2.4947 6 6 1.5299 2.1638 -1.2492 7 8 2.0062 1.4902 -2.4161 8 6 3.5470 1.4427 -0.0006 9 8 4.1535 0.4064 0.1702 10 7 4.2207 2.5933 -0.1967 11 6 3.6154 3.9303 -0.3362 12 6 4.7371 4.9167 0.0825 13 6 5.9945 4.2213 -0.5034 14 8 6.1455 4.5342 -1.8894 15 6 7.2303 4.6092 0.2667 16 1 7.7601 3.8680 0.8467 17 6 7.6849 5.9104 0.2307 18 7 7.0398 6.8130 -0.4752 19 14 9.2174 6.3911 1.1848 20 1 9.7538 5.2007 1.8921 21 1 10.2426 6.9117 0.2450 22 1 8.8742 7.4430 2.1752 23 6 5.6806 2.7223 -0.3131 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8121 3.2155 1.2021 30 1 0.4443 2.0807 1.2989 31 1 1.8658 0.4734 2.5418 32 1 3.2336 1.6083 2.4450 33 1 1.7843 2.0388 3.3848 34 1 0.4399 2.1637 -1.2493 35 1 1.8928 3.1916 -1.2490 36 1 1.7205 1.8935 -3.2472 37 1 3.3187 4.1064 -1.3701 38 1 2.7566 4.0292 0.3278 39 1 4.8055 4.9982 1.1673 40 1 4.5847 5.8956 -0.3719 41 1 6.3439 5.4646 -2.0633 42 1 7.3593 7.7286 -0.5003 43 1 6.1588 2.3559 0.5954 44 1 6.0351 2.1570 -1.1750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594374305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:09 Heat of formation + Delta-G solvation = -136.787584 kcal Electronic energy + Delta-G solvation = -24982.856143 eV Core-core repulsion = 21514.227238 eV Total energy + Delta-G solvation = -3468.628905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42441 -37.79780 -36.75505 -35.27390 -34.35057 -32.15949 -31.28906 -29.87460 -28.94813 -27.85741 -25.20270 -24.67903 -23.15222 -22.52347 -20.47736 -19.39408 -18.33880 -17.31319 -17.18692 -16.09969 -15.80644 -15.38936 -15.29784 -14.94784 -14.32634 -14.18676 -13.93632 -13.21920 -13.10921 -12.91501 -12.84589 -12.47987 -12.20177 -12.08469 -11.83749 -11.59806 -11.55443 -11.47085 -11.34665 -11.23715 -10.94614 -10.87577 -10.66620 -10.48614 -10.46747 -10.16422 -10.08393 -9.81639 -9.38768 -9.07296 -8.67284 -8.20204 -7.90744 -6.31194 -4.37995 3.17715 3.19490 3.26946 3.32034 3.59601 4.16511 4.26028 4.61390 4.86963 4.93692 5.00962 5.14139 5.20537 5.29267 5.41653 5.44979 5.50876 5.54183 5.62746 5.73873 5.78054 5.84472 5.90211 5.95403 5.98867 6.09404 6.18384 6.27322 6.29848 6.34816 6.50278 6.58091 6.73593 6.91849 7.00884 7.28811 7.33383 7.68084 7.72451 8.00624 8.22161 8.64379 8.76567 9.30679 9.45188 10.76668 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.004854 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.346744 B = 5767.314213 C = 6034.102135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 C -0.070 4.070 4 C -0.120 4.120 5 C -0.154 4.154 6 C 0.069 3.931 7 O -0.562 6.562 8 C 0.546 3.454 9 O -0.553 6.553 10 N -0.605 5.605 11 C 0.089 3.911 12 C -0.138 4.138 13 C 0.249 3.751 14 O -0.586 6.586 15 C -0.533 4.533 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.123 3.877 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.377 0.623 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.385 0.615 42 H 0.268 0.732 43 H 0.069 0.931 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.303 -4.177 0.885 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.134 4.134 3 C -0.073 4.073 4 C -0.158 4.158 5 C -0.211 4.211 6 C -0.008 4.008 7 O -0.367 6.367 8 C 0.334 3.666 9 O -0.432 6.432 10 N -0.337 5.337 11 C -0.033 4.033 12 C -0.176 4.176 13 C 0.208 3.792 14 O -0.396 6.396 15 C -0.571 4.571 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C 0.002 3.998 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.224 0.776 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.237 0.763 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.846 -5.636 1.329 15.008 hybrid contribution 0.637 1.496 0.086 1.628 sum -13.209 -4.140 1.415 13.915 Atomic orbital electron populations 1.21909 0.95996 1.01559 1.01557 1.21282 0.94782 0.93773 1.03558 1.20822 0.92943 0.98431 0.95116 1.21738 1.00950 1.00054 0.93011 1.21805 1.01645 1.00950 0.96673 1.22554 0.97322 0.95999 0.84973 1.86547 1.77610 1.56822 1.15727 1.19752 0.88631 0.82297 0.75931 1.90630 1.70154 1.31494 1.50897 1.48494 1.08514 1.06551 1.70136 1.22812 0.97418 0.83200 0.99854 1.23372 0.95083 0.98076 1.01110 1.19428 0.91974 0.87321 0.80465 1.86108 1.93909 1.33820 1.25806 1.21607 1.10779 0.95170 1.29578 0.91674 1.24980 0.97109 0.96052 0.94862 1.69579 1.39897 1.03347 1.41081 0.86358 0.82451 0.78551 0.79621 1.19567 1.20738 1.20821 1.22045 0.78510 0.98558 1.00735 0.92688 0.92729 0.92573 0.90802 0.91086 0.90570 0.90526 0.92171 0.92227 0.92387 0.92971 0.91759 0.77634 0.91958 0.91651 0.91454 0.89778 0.76302 0.92180 0.91255 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.22 37.16 0.34 -1.23 16 2 C -0.10 -1.34 3.95 -26.73 -0.11 -1.44 16 3 C -0.07 -1.02 0.14 -155.66 -0.02 -1.04 16 4 C -0.12 -1.46 4.62 -26.73 -0.12 -1.59 16 5 C -0.15 -1.98 9.35 37.16 0.35 -1.63 16 6 C 0.07 0.88 5.26 37.16 0.20 1.08 16 7 O -0.56 -7.94 12.61 -35.23 -0.44 -8.38 16 8 C 0.55 10.65 4.71 -10.98 -0.05 10.60 16 9 O -0.55 -12.71 16.31 5.56 0.09 -12.62 16 10 N -0.60 -12.19 3.30 -170.38 -0.56 -12.75 16 11 C 0.09 1.60 4.90 -2.41 -0.01 1.58 16 12 C -0.14 -2.92 5.69 -24.46 -0.14 -3.06 16 13 C 0.25 6.01 0.85 -89.93 -0.08 5.94 16 14 O -0.59 -14.88 13.08 -35.23 -0.46 -15.34 16 15 C -0.53 -13.96 8.22 -34.44 -0.28 -14.25 16 16 H 0.07 1.73 7.53 -52.48 -0.40 1.33 16 17 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 18 N -0.90 -22.88 10.70 55.43 0.59 -22.29 16 19 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 C 0.12 2.87 6.22 -3.06 -0.02 2.85 16 24 H 0.05 0.53 6.43 -51.93 -0.33 0.20 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.51 6.31 -51.93 -0.33 0.18 16 27 H 0.07 1.19 7.68 -51.93 -0.40 0.79 16 28 H 0.07 1.04 6.43 -51.93 -0.33 0.70 16 29 H 0.08 0.93 5.10 -51.93 -0.26 0.66 16 30 H 0.08 0.74 6.16 -51.93 -0.32 0.42 16 31 H 0.06 0.74 6.58 -51.93 -0.34 0.40 16 32 H 0.06 0.95 7.07 -51.93 -0.37 0.58 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.53 6.43 -51.93 -0.33 0.19 16 35 H 0.06 0.83 4.15 -51.93 -0.22 0.61 16 36 H 0.38 3.54 9.12 45.56 0.42 3.95 16 37 H 0.06 1.09 6.90 -51.93 -0.36 0.73 16 38 H 0.07 0.97 4.51 -51.92 -0.23 0.74 16 39 H 0.07 1.46 8.05 -51.93 -0.42 1.04 16 40 H 0.08 1.84 7.77 -51.93 -0.40 1.44 16 41 H 0.39 9.81 6.98 45.56 0.32 10.13 16 42 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 43 H 0.07 1.65 7.63 -51.93 -0.40 1.25 16 44 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -30.28 328.75 -6.00 -36.28 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -5.11 Total: 15.41 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.04 Total: -0.44 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.03 Total: -35.04 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.81 Total: -36.34 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.28 -6.00 -36.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594374305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.510 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds