Wall clock time and date at job start Tue Mar 31 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46746 * 2 1 4 4 C 1.52998 * 109.46678 * 120.00034 * 2 1 3 5 5 O 1.42900 * 109.47334 * 295.00088 * 4 2 1 6 6 C 1.52993 * 109.46960 * 239.99870 * 2 1 3 7 7 N 1.46506 * 109.47253 * 65.00607 * 6 2 1 8 8 C 1.34774 * 120.00259 * 179.97438 * 7 6 2 9 9 O 1.21593 * 119.99646 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00277 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99970 * 179.97438 * 10 8 7 12 12 C 1.53034 * 109.46388 * 275.02847 * 11 10 8 13 13 C 1.53185 * 109.31575 * 178.60322 * 12 11 10 14 14 N 1.46930 * 108.76579 * 54.65297 * 13 12 11 15 15 C 1.36935 * 120.63034 * 126.40506 * 14 13 12 16 16 H 1.08005 * 120.00159 * 332.61479 * 15 14 13 17 17 C 1.38814 * 120.00320 * 152.60974 * 15 14 13 18 18 N 1.31613 * 120.00367 * 159.34306 * 17 15 14 19 19 Si 1.86804 * 119.99627 * 339.34919 * 17 15 14 20 20 H 1.48493 * 109.47076 * 92.94158 * 19 17 15 21 21 H 1.48497 * 109.46955 * 212.93876 * 19 17 15 22 22 H 1.48501 * 109.47182 * 332.93920 * 19 17 15 23 23 C 1.46925 * 118.74001 * 306.38888 * 14 13 12 24 24 C 1.53039 * 109.45792 * 154.97464 * 11 10 8 25 25 H 1.09004 * 109.47309 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47593 * 299.99625 * 1 2 3 27 27 H 1.08998 * 109.47040 * 60.00520 * 1 2 3 28 28 H 1.09008 * 109.47024 * 175.00253 * 4 2 1 29 29 H 1.09001 * 109.47316 * 55.00510 * 4 2 1 30 30 H 0.96701 * 114.00002 * 180.02562 * 5 4 2 31 31 H 1.09009 * 109.46926 * 184.99724 * 6 2 1 32 32 H 1.08991 * 109.47691 * 304.99927 * 6 2 1 33 33 H 0.96998 * 119.99900 * 359.97438 * 7 6 2 34 34 H 0.96994 * 119.99486 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.45688 * 35.00715 * 11 10 8 36 36 H 1.08999 * 109.49759 * 298.57177 * 12 11 10 37 37 H 1.09000 * 109.49939 * 58.66017 * 12 11 10 38 38 H 1.09003 * 109.59768 * 294.86890 * 13 12 11 39 39 H 1.09001 * 109.70567 * 174.50563 * 13 12 11 40 40 H 0.97002 * 120.00167 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.58274 * 293.81688 * 23 14 13 42 42 H 1.09003 * 109.70209 * 173.46252 * 23 14 13 43 43 H 1.09010 * 109.49591 * 301.33975 * 24 11 10 44 44 H 1.09001 * 109.49723 * 61.43225 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 1.6618 0.0167 2.4131 6 6 2.0400 -0.7213 -1.2492 7 7 1.6525 0.0354 -2.4424 8 6 1.9965 -0.4130 -3.6659 9 8 2.6288 -1.4454 -3.7794 10 7 1.6396 0.2828 -4.7636 11 6 2.0140 -0.2044 -6.0935 12 6 3.4290 0.2708 -6.4309 13 6 3.8303 -0.2694 -7.8070 14 7 2.8106 0.1289 -8.7869 15 6 3.1642 0.7926 -9.9313 16 1 4.0522 1.4071 -9.9467 17 6 2.3815 0.6755 -11.0717 18 7 2.4581 1.5861 -12.0189 19 14 1.2193 -0.7746 -11.2619 20 1 -0.1253 -0.4011 -10.7544 21 1 1.1213 -1.1455 -12.6965 22 1 1.7380 -1.9298 -10.4862 23 6 1.4042 -0.1988 -8.5159 24 6 1.0303 0.3405 -7.1316 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 3.1263 -0.7995 1.2057 29 1 1.6053 -1.7198 1.2951 30 1 1.9530 -0.3830 3.2441 31 1 3.1264 -0.7994 -1.2055 32 1 1.6054 -1.7197 -1.2951 33 1 1.1484 0.8591 -2.3518 34 1 1.1355 1.1065 -4.6730 35 1 1.9849 -1.2940 -6.1025 36 1 3.4529 1.3604 -6.4465 37 1 4.1258 -0.0979 -5.6782 38 1 3.8948 -1.3569 -7.7683 39 1 4.7965 0.1438 -8.0966 40 1 1.9108 1.5045 -12.8156 41 1 1.2708 -1.2804 -8.5349 42 1 0.7674 0.2613 -9.2715 43 1 0.0195 0.0212 -6.8776 44 1 1.0769 1.4294 -7.1406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609338661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:37 Heat of formation + Delta-G solvation = -95.469164 kcal Electronic energy + Delta-G solvation = -22940.412652 eV Core-core repulsion = 19505.868199 eV Total energy + Delta-G solvation = -3434.544453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24816 -39.45953 -38.53766 -36.52703 -35.91492 -34.19257 -33.40234 -31.97144 -31.48566 -27.84244 -27.04424 -25.94013 -24.48295 -23.47711 -21.88724 -21.38254 -21.19086 -19.42356 -18.73773 -18.27971 -17.58693 -17.04607 -16.70115 -16.20718 -15.94305 -15.72358 -15.44285 -15.31412 -14.90352 -14.75727 -14.59533 -14.38731 -14.18604 -13.77480 -13.66824 -13.46119 -13.35403 -12.58490 -12.53801 -12.30570 -12.25693 -12.06146 -12.01281 -11.77177 -11.67288 -11.55386 -11.38919 -11.26552 -10.86871 -10.70665 -10.31535 -9.74094 -8.96274 -8.15559 -5.47888 1.30236 1.43702 1.52524 1.68136 2.18482 2.42276 3.06391 3.14616 3.33761 3.48571 3.79236 3.85671 3.91783 4.00756 4.21494 4.24781 4.33427 4.49565 4.50726 4.54221 4.63519 4.64458 4.69763 4.75802 4.88232 4.92006 4.93437 5.00478 5.04878 5.08412 5.17587 5.23645 5.35991 5.41428 5.51202 5.58455 5.87374 6.03639 6.13565 6.90949 6.91227 7.12862 7.61772 7.61916 8.02558 9.04218 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.046230 B = 0.002837 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.518100 B = 9866.101882 C =10027.004221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.084 0.916 4 C 0.082 3.918 5 O -0.590 6.590 6 C 0.148 3.852 7 N -0.731 5.731 8 C 0.700 3.300 9 O -0.635 6.635 10 N -0.727 5.727 11 C 0.179 3.821 12 C -0.128 4.128 13 C 0.147 3.853 14 N -0.619 5.619 15 C -0.248 4.248 16 H 0.053 0.947 17 C -0.034 4.034 18 N -0.956 5.956 19 Si 0.945 3.055 20 H -0.268 1.268 21 H -0.312 1.312 22 H -0.265 1.265 23 C 0.121 3.879 24 C -0.126 4.126 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.399 0.601 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.410 0.590 34 H 0.410 0.590 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.058 0.942 40 H 0.262 0.738 41 H 0.032 0.968 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.620 -3.147 28.585 29.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.103 0.897 4 C 0.004 3.996 5 O -0.399 6.399 6 C 0.023 3.977 7 N -0.388 5.388 8 C 0.400 3.600 9 O -0.517 6.517 10 N -0.382 5.382 11 C 0.074 3.926 12 C -0.168 4.168 13 C 0.022 3.978 14 N -0.344 5.344 15 C -0.378 4.378 16 H 0.070 0.930 17 C -0.229 4.229 18 N -0.602 5.602 19 Si 0.773 3.227 20 H -0.194 1.194 21 H -0.241 1.241 22 H -0.190 1.190 23 C -0.005 4.005 24 C -0.166 4.166 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.249 0.751 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.247 0.753 34 H 0.246 0.754 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.348 -3.656 27.925 28.666 hybrid contribution -0.378 -0.156 -0.350 0.538 sum -5.726 -3.812 27.575 28.420 Atomic orbital electron populations 1.21763 0.93755 1.02185 1.02182 1.21233 0.97415 1.00677 0.92180 0.89750 1.22061 0.98692 0.94156 0.84697 1.86394 1.81922 1.54098 1.17439 1.21067 0.99536 0.94763 0.82310 1.44914 1.61129 1.29203 1.03602 1.16111 0.79577 0.83013 0.81290 1.90901 1.47265 1.27001 1.86491 1.45090 1.60476 1.28386 1.04245 1.20504 0.93758 0.98308 0.80075 1.22208 0.96880 1.00906 0.96797 1.21008 0.91942 0.96763 0.88131 1.44518 1.02029 1.67207 1.20640 1.18861 1.10415 1.20070 0.88436 0.92957 1.25892 1.01288 1.00152 0.95555 1.69958 1.44208 1.35153 1.10879 0.85944 0.79566 0.81898 0.75252 1.19424 1.24068 1.18996 1.21378 0.85425 0.97483 0.96165 1.22154 0.98940 1.01669 0.93805 0.92673 0.92070 0.92075 0.92561 0.92427 0.75139 0.92254 0.92111 0.75304 0.75396 0.91496 0.91955 0.91893 0.95333 0.92360 0.92908 0.95036 0.92301 0.89221 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.96 71.98 0.65 -0.98 16 2 C -0.10 -1.13 2.66 -10.80 -0.03 -1.16 16 3 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 4 C 0.08 0.83 6.43 71.98 0.46 1.30 16 5 O -0.59 -6.57 13.19 -148.98 -1.97 -8.53 16 6 C 0.15 2.37 5.06 86.38 0.44 2.81 16 7 N -0.73 -12.83 5.29 -478.53 -2.53 -15.36 16 8 C 0.70 18.34 8.53 179.06 1.53 19.87 16 9 O -0.64 -22.62 16.01 -4.01 -0.06 -22.69 16 10 N -0.73 -17.23 5.08 -457.69 -2.33 -19.55 16 11 C 0.18 5.47 2.42 45.02 0.11 5.58 16 12 C -0.13 -4.29 5.65 30.67 0.17 -4.12 16 13 C 0.15 5.94 6.52 86.36 0.56 6.50 16 14 N -0.62 -29.24 2.77 -699.10 -1.94 -31.17 16 15 C -0.25 -14.12 10.03 84.03 0.84 -13.27 16 16 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 17 C -0.03 -1.99 5.23 84.86 0.44 -1.55 16 18 N -0.96 -59.92 13.97 21.65 0.30 -59.62 16 19 Si 0.94 46.39 24.35 68.60 1.67 48.06 16 20 H -0.27 -12.15 6.62 99.48 0.66 -11.49 16 21 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 22 H -0.27 -12.69 6.63 99.48 0.66 -12.03 16 23 C 0.12 5.00 4.20 86.36 0.36 5.36 16 24 C -0.13 -3.92 5.55 30.67 0.17 -3.75 16 25 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.06 0.77 7.82 -2.39 -0.02 0.75 16 27 H 0.06 0.62 7.18 -2.39 -0.02 0.60 16 28 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.40 1.00 9.12 -74.06 -0.68 0.32 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.41 4.77 7.67 -92.71 -0.71 4.06 16 34 H 0.41 7.01 8.62 -92.71 -0.80 6.21 16 35 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 40 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.03 1.29 7.07 -2.39 -0.02 1.27 16 42 H 0.06 2.65 4.50 -2.39 -0.01 2.64 16 43 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -75.23 345.67 -2.41 -77.64 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -1.27 Total: 14.64 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 5.71 Total: 16.59 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -6.49 Total: -125.71 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -2.03 Total: -31.22 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.67 Total: 48.06 kcal Total: -75.23 -2.41 -77.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.830 kcal (2) G-P(sol) polarization free energy of solvation -75.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds