Wall clock time and date at job start Tue Mar 31 2020 03:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00035 * 2 1 4 4 C 1.53241 * 109.33939 * 187.25336 * 3 2 1 5 5 N 1.47074 * 108.52405 * 306.17552 * 4 3 2 6 6 C 1.34778 * 120.87899 * 231.16635 * 5 4 3 7 7 O 1.21285 * 119.99534 * 175.17870 * 6 5 4 8 8 C 1.50693 * 120.00021 * 355.17221 * 6 5 4 9 9 H 1.08998 * 109.47564 * 320.00774 * 8 6 5 10 10 N 1.46905 * 109.47062 * 200.00122 * 8 6 5 11 11 C 1.53002 * 109.46841 * 80.00568 * 8 6 5 12 12 C 1.53001 * 109.47092 * 184.99693 * 11 8 6 13 13 C 1.50699 * 109.46999 * 180.02562 * 12 11 8 14 14 H 1.08000 * 120.00429 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99893 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00278 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99789 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47273 * 90.00639 * 17 15 13 19 19 H 1.48508 * 109.46852 * 210.00091 * 17 15 13 20 20 H 1.48493 * 109.47275 * 329.99793 * 17 15 13 21 21 C 1.47081 * 118.23854 * 51.18400 * 5 4 3 22 22 H 1.08997 * 109.62767 * 68.52695 * 21 5 4 23 23 C 1.52998 * 109.62682 * 188.91210 * 21 5 4 24 24 O 1.42904 * 109.47132 * 174.77690 * 23 21 5 25 25 C 1.46892 * 111.00220 * 124.30791 * 2 1 3 26 26 H 1.09004 * 109.47481 * 56.03960 * 1 2 3 27 27 H 1.09002 * 109.46684 * 296.03962 * 1 2 3 28 28 H 1.08998 * 109.47122 * 176.04515 * 1 2 3 29 29 H 1.08996 * 109.49446 * 307.21641 * 3 2 1 30 30 H 1.09001 * 109.48734 * 67.26819 * 3 2 1 31 31 H 1.08997 * 109.62275 * 65.88704 * 4 3 2 32 32 H 1.09000 * 109.62278 * 186.46368 * 4 3 2 33 33 H 1.00900 * 111.00300 * 300.00394 * 10 8 6 34 34 H 1.00896 * 110.99738 * 63.96238 * 10 8 6 35 35 H 1.08991 * 109.47302 * 304.99974 * 11 8 6 36 36 H 1.09007 * 109.47208 * 65.00209 * 11 8 6 37 37 H 1.09004 * 109.47102 * 300.00161 * 12 11 8 38 38 H 1.08993 * 109.47178 * 59.99941 * 12 11 8 39 39 H 0.96989 * 119.99981 * 179.97438 * 16 15 13 40 40 H 1.08992 * 109.47260 * 294.77432 * 23 21 5 41 41 H 1.08997 * 109.47667 * 54.78220 * 23 21 5 42 42 H 0.96695 * 114.00462 * 180.02562 * 24 23 21 43 43 H 1.09000 * 109.49548 * 292.70240 * 25 2 1 44 44 H 1.09001 * 109.49342 * 52.78630 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5164 1.3312 -0.1826 5 7 4.0870 0.4460 0.8440 6 6 5.1059 0.8581 1.6241 7 8 5.5064 0.1492 2.5231 8 6 5.7475 2.1995 1.3793 9 1 5.8392 2.3680 0.3063 10 7 7.0812 2.2240 1.9947 11 6 4.8809 3.2994 1.9959 12 6 5.4653 4.6681 1.6411 13 6 4.6122 5.7514 2.2490 14 1 3.7406 5.4899 2.8306 15 6 4.9444 7.0766 2.0626 16 7 4.2001 8.0221 2.5936 17 14 6.4523 7.5290 1.0572 18 1 6.0686 7.6822 -0.3691 19 1 7.0158 8.8083 1.5584 20 1 7.4714 6.4563 1.1833 21 6 3.5165 -0.9011 0.9966 22 1 3.7562 -1.5017 0.1192 23 6 4.0944 -1.5653 2.2478 24 8 3.4494 -2.8226 2.4607 25 6 1.9955 -0.7729 1.1328 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3633 0.4512 0.9234 28 1 -0.3633 -1.0252 -0.0709 29 1 1.5457 1.9337 -0.8182 30 1 1.7551 1.8532 0.9478 31 1 3.7561 0.9451 -1.1733 32 1 3.9255 2.3351 -0.0689 33 1 7.0229 2.0701 2.9902 34 1 7.6926 1.5496 1.5596 35 1 3.8664 3.2249 1.6046 36 1 4.8619 3.1823 3.0795 37 1 6.4800 4.7425 2.0325 38 1 5.4845 4.7852 0.5576 39 1 4.4341 8.9542 2.4628 40 1 5.1644 -1.7241 2.1135 41 1 3.9282 -0.9210 3.1110 42 1 3.7665 -3.3005 3.2392 43 1 1.7556 -0.2615 2.0650 44 1 1.5457 -1.7658 1.1360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699461562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:10 Heat of formation + Delta-G solvation = -64.025356 kcal Electronic energy + Delta-G solvation = -24164.825832 eV Core-core repulsion = 20731.644885 eV Total energy + Delta-G solvation = -3433.180947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.83305 -38.30099 -36.84633 -35.51776 -34.72301 -32.83699 -31.78576 -30.54736 -29.00576 -26.90146 -26.34192 -24.42309 -23.63450 -22.11673 -21.14560 -20.24621 -18.95158 -17.65158 -17.03128 -16.76928 -15.96661 -15.87485 -15.63664 -15.32193 -15.04496 -14.83071 -14.22991 -14.11686 -13.78499 -13.70156 -13.43902 -13.11018 -12.64150 -12.46152 -12.32302 -12.21842 -11.97775 -11.69471 -11.54071 -11.38645 -11.30323 -10.92889 -10.87012 -10.15842 -10.04552 -9.89950 -9.72887 -9.51247 -9.14182 -8.86974 -8.52970 -8.47530 -8.36088 -6.02505 -4.00525 2.55579 2.75710 3.33601 3.41965 3.49564 3.67920 4.17133 4.48756 4.57276 4.66030 4.76662 4.83331 4.91898 5.08654 5.10620 5.23195 5.28655 5.33083 5.34629 5.37426 5.50145 5.57825 5.60970 5.62679 5.68184 5.76876 5.78072 5.97595 6.21661 6.36423 6.43156 6.75335 6.79807 6.81716 7.17466 7.30458 7.34591 7.53304 7.54250 7.61803 7.82952 8.10729 8.54269 9.01730 9.60411 11.10934 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.004652 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.542695 B = 6016.846172 C = 6937.806849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.037 3.963 4 C 0.107 3.893 5 N -0.607 5.607 6 C 0.486 3.514 7 O -0.550 6.550 8 C 0.074 3.926 9 H 0.099 0.901 10 N -0.810 5.810 11 C -0.089 4.089 12 C -0.004 4.004 13 C -0.522 4.522 14 H 0.068 0.932 15 C 0.067 3.933 16 N -0.906 5.906 17 Si 0.878 3.122 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.260 1.260 21 C 0.151 3.849 22 H 0.082 0.918 23 C 0.088 3.912 24 O -0.589 6.589 25 C 0.052 3.948 26 H 0.071 0.929 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.349 0.651 34 H 0.335 0.665 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.008 0.992 39 H 0.262 0.738 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.381 0.619 43 H 0.037 0.963 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 -19.098 -5.813 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.092 4.092 4 C -0.016 4.016 5 N -0.342 5.342 6 C 0.274 3.726 7 O -0.429 6.429 8 C -0.042 4.042 9 H 0.117 0.883 10 N -0.338 5.338 11 C -0.128 4.128 12 C -0.041 4.041 13 C -0.560 4.560 14 H 0.086 0.914 15 C -0.134 4.134 16 N -0.545 5.545 17 Si 0.706 3.294 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.184 1.184 21 C 0.047 3.953 22 H 0.100 0.900 23 C 0.010 3.990 24 O -0.395 6.395 25 C -0.077 4.077 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.164 0.836 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.228 0.772 43 H 0.056 0.944 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.721 -18.546 -6.536 19.851 hybrid contribution 0.362 -0.334 0.930 1.052 sum -2.359 -18.880 -5.606 19.835 Atomic orbital electron populations 1.22352 0.86790 1.02266 1.00794 1.61954 1.08122 1.13629 1.43260 1.22535 0.94972 0.89491 1.02185 1.22039 0.92847 0.95429 0.91268 1.48374 1.34520 1.14514 1.36803 1.22697 0.79131 0.90098 0.80647 1.90639 1.64100 1.56362 1.31804 1.21903 0.90500 0.90446 1.01327 0.88304 1.59034 1.08502 1.56741 1.09499 1.21536 0.96661 0.94386 1.00178 1.19486 0.97685 0.90973 0.95972 1.21153 1.11843 0.89938 1.33051 0.91390 1.25008 0.96493 0.96471 0.95430 1.69920 1.39107 1.00079 1.45405 0.86786 0.84197 0.78044 0.80398 1.20450 1.21595 1.18406 1.21205 0.92411 0.83166 0.98529 0.90019 1.22770 0.95680 0.83896 0.96618 1.86312 1.67013 1.34593 1.51583 1.22432 0.94452 0.99123 0.91663 0.91068 0.95474 0.91298 0.88959 0.93592 0.90394 0.87577 0.83633 0.85275 0.92179 0.92202 0.94733 0.97333 0.92810 0.91429 0.92065 0.77161 0.94426 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.58 60.07 0.58 0.82 16 2 N -0.55 -6.09 4.88 -242.60 -1.18 -7.27 16 3 C 0.04 0.42 5.62 -3.70 -0.02 0.39 16 4 C 0.11 1.23 5.93 -3.60 -0.02 1.21 16 5 N -0.61 -7.91 3.01 -164.93 -0.50 -8.40 16 6 C 0.49 7.19 6.85 -10.99 -0.08 7.11 16 7 O -0.55 -8.94 11.75 5.55 0.07 -8.88 16 8 C 0.07 1.13 2.29 -68.86 -0.16 0.97 16 9 H 0.10 1.40 7.11 -51.93 -0.37 1.03 16 10 N -0.81 -12.27 8.44 -5.65 -0.05 -12.32 16 11 C -0.09 -1.67 4.41 -26.73 -0.12 -1.79 16 12 C 0.00 -0.09 3.93 -27.88 -0.11 -0.19 16 13 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 14 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.91 -27.80 13.96 55.43 0.77 -27.02 16 17 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 21 C 0.15 1.90 3.41 -67.49 -0.23 1.67 16 22 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 23 C 0.09 1.13 4.95 37.16 0.18 1.31 16 24 O -0.59 -6.62 12.96 -35.23 -0.46 -7.08 16 25 C 0.05 0.62 4.62 -3.70 -0.02 0.60 16 26 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.11 1.27 4.65 -51.93 -0.24 1.03 16 33 H 0.35 5.40 8.58 -39.29 -0.34 5.06 16 34 H 0.34 4.36 9.06 -39.29 -0.36 4.00 16 35 H 0.06 1.08 6.56 -51.93 -0.34 0.74 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.03 0.83 6.81 -51.93 -0.35 0.47 16 38 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.07 0.94 6.69 -51.93 -0.35 0.59 16 41 H 0.06 0.90 6.86 -51.93 -0.36 0.55 16 42 H 0.38 2.74 9.12 45.56 0.42 3.16 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 1.07 7.78 -51.93 -0.40 0.66 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -32.34 340.20 -7.78 -40.12 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.47 Total: 9.77 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.42 Total: -0.95 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.96 Total: -55.02 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.39 Total: -15.95 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.34 -7.78 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699461562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.904 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds