Wall clock time and date at job start Tue Mar 31 2020 03:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.41605 * 113.99811 * 2 1 4 4 C 1.46499 * 119.99788 * 270.00315 * 3 2 1 5 5 C 1.34777 * 120.00013 * 89.99803 * 3 2 1 6 6 O 1.21283 * 119.99750 * 179.97438 * 5 3 2 7 7 C 1.50702 * 119.99928 * 0.27990 * 5 3 2 8 8 C 1.52996 * 109.47159 * 179.72352 * 7 5 3 9 9 N 1.46896 * 109.47255 * 179.97438 * 8 7 5 10 10 C 1.46948 * 111.00183 * 293.79792 * 9 8 7 11 11 C 1.53049 * 109.36764 * 176.80851 * 10 9 8 12 12 N 1.46961 * 109.36177 * 58.40434 * 11 10 9 13 13 C 1.46896 * 111.00056 * 176.81126 * 12 11 10 14 14 C 1.50700 * 109.47199 * 293.79854 * 13 12 11 15 15 H 1.07996 * 119.99760 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99979 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00198 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99973 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47187 * 60.00238 * 18 16 14 20 20 H 1.48499 * 109.47134 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47163 * 299.99945 * 18 16 14 22 22 C 1.46956 * 110.87704 * 300.67780 * 12 11 10 23 23 C 1.46963 * 111.00029 * 169.99612 * 9 8 7 24 24 H 1.08995 * 109.47077 * 299.99850 * 1 2 3 25 25 H 1.09003 * 109.47302 * 59.99972 * 1 2 3 26 26 H 1.09006 * 109.46826 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47189 * 269.99593 * 4 3 2 28 28 H 1.09001 * 109.47567 * 29.99546 * 4 3 2 29 29 H 1.09005 * 109.47076 * 150.00052 * 4 3 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 7 5 3 31 31 H 1.08994 * 109.46990 * 59.72065 * 7 5 3 32 32 H 1.09004 * 109.47066 * 299.99797 * 8 7 5 33 33 H 1.09000 * 109.47234 * 59.99288 * 8 7 5 34 34 H 1.08999 * 109.48998 * 296.77780 * 10 9 8 35 35 H 1.09003 * 109.49079 * 56.83983 * 10 9 8 36 36 H 1.09000 * 109.49067 * 298.43821 * 11 10 9 37 37 H 1.09001 * 109.49268 * 178.36774 * 11 10 9 38 38 H 1.09003 * 109.47316 * 53.79820 * 13 12 11 39 39 H 1.08998 * 109.47120 * 173.79378 * 13 12 11 40 40 H 0.96996 * 120.00179 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.49195 * 299.35522 * 22 12 11 42 42 H 1.09000 * 109.50588 * 179.29776 * 22 12 11 43 43 H 1.09001 * 109.48867 * 303.15880 * 23 9 8 44 44 H 1.09000 * 109.48524 * 63.22347 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3027 1.9628 -1.2687 5 6 2.2790 1.9093 1.1672 6 8 2.7727 3.0171 1.1671 7 6 1.9783 1.2183 2.4723 8 6 2.3877 2.1244 3.6352 9 7 2.0941 1.4511 4.9073 10 6 0.6460 1.2832 5.0924 11 6 0.3861 0.5094 6.3870 12 7 0.9774 1.2387 7.5176 13 6 0.6838 0.5654 8.7897 14 6 -0.7971 0.6290 9.0616 15 1 -1.4544 1.1200 8.3594 16 6 -1.3129 0.0594 10.2064 17 7 -0.5125 -0.5390 11.0613 18 14 -3.1486 0.1375 10.5430 19 1 -3.8827 -0.5390 9.4436 20 1 -3.4455 -0.5430 11.8291 21 1 -3.5770 1.5570 10.6243 22 6 2.4256 1.4066 7.3326 23 6 2.6855 2.1804 6.0379 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.3155 1.7109 -1.5834 28 1 1.5938 1.6336 -2.0284 29 1 2.2207 3.0419 -1.1384 30 1 0.9106 1.0077 2.5343 31 1 2.5367 0.2839 2.5257 32 1 3.4554 2.3350 3.5732 33 1 1.8293 3.0589 3.5817 34 1 0.1711 2.2624 5.1524 35 1 0.2333 0.7297 4.2488 36 1 0.8379 -0.4801 6.3163 37 1 -0.6883 0.4088 6.5412 38 1 0.9979 -0.4767 8.7304 39 1 1.2230 1.0619 9.5965 40 1 -0.8753 -0.9394 11.8668 41 1 2.9005 0.4273 7.2725 42 1 2.8385 1.9599 8.1760 43 1 3.7599 2.2809 5.8837 44 1 2.2337 3.1698 6.1087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808742164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:14 Heat of formation + Delta-G solvation = -12.178060 kcal Electronic energy + Delta-G solvation = -23058.939862 eV Core-core repulsion = 19628.007182 eV Total energy + Delta-G solvation = -3430.932679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22209 -38.69806 -37.70568 -35.35776 -33.35825 -32.68306 -31.32043 -30.34889 -28.23586 -27.48213 -26.42988 -24.80112 -23.20073 -22.22004 -21.25852 -20.42030 -19.16071 -17.94133 -17.07452 -16.66331 -16.29711 -15.72985 -15.36466 -14.76346 -14.72797 -14.48967 -14.31661 -14.18578 -13.96891 -13.77730 -13.39365 -13.16251 -12.87798 -12.65010 -12.34374 -12.09420 -11.87663 -11.62448 -11.32220 -11.09973 -11.00973 -10.84529 -10.70236 -10.58685 -10.32275 -10.26030 -10.12402 -9.69239 -9.41304 -9.17355 -8.42591 -8.12434 -7.20093 -6.01444 -4.02991 1.50915 2.21867 3.33392 3.37654 3.40323 3.52794 4.22955 4.42951 4.67957 4.77537 4.82076 4.85516 4.92481 4.95709 5.01748 5.11143 5.21679 5.32502 5.33809 5.37524 5.50150 5.59886 5.67827 5.82823 5.88013 5.90669 5.95038 6.02000 6.09455 6.24794 6.47772 6.61952 6.69384 6.98891 7.21211 7.24500 7.37479 7.40284 7.71900 7.81173 8.11312 8.23363 8.57345 9.04321 9.61066 11.09430 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.003133 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.381037 B = 8935.168995 C = 9692.209616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 O -0.140 6.140 3 N -0.487 5.487 4 C 0.085 3.915 5 C 0.528 3.472 6 O -0.523 6.523 7 C -0.132 4.132 8 C 0.071 3.929 9 N -0.541 5.541 10 C 0.054 3.946 11 C 0.068 3.932 12 N -0.539 5.539 13 C 0.194 3.806 14 C -0.508 4.508 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.057 3.943 23 C 0.063 3.937 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.085 0.915 38 H -0.008 1.008 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.985 2.187 -23.272 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 O -0.144 6.144 3 N -0.268 5.268 4 C -0.055 4.055 5 C 0.318 3.682 6 O -0.399 6.399 7 C -0.172 4.172 8 C -0.058 4.058 9 N -0.266 5.266 10 C -0.074 4.074 11 C -0.061 4.061 12 N -0.265 5.265 13 C 0.069 3.931 14 C -0.546 4.546 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.072 4.072 23 C -0.065 4.065 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.129 0.871 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.104 0.896 38 H 0.009 0.991 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.371 2.521 -23.078 23.623 hybrid contribution -1.377 -0.171 0.154 1.396 sum 2.993 2.350 -22.923 23.237 Atomic orbital electron populations 1.23442 0.81386 1.04311 1.01539 1.90672 1.20291 1.06608 1.96821 1.50066 1.59352 1.10448 1.06884 1.21887 1.01630 0.98022 0.83956 1.21001 0.77145 0.85095 0.84974 1.90757 1.43922 1.19018 1.86167 1.21632 1.04034 1.01129 0.90369 1.21774 1.01736 0.94343 0.87947 1.62133 1.13053 1.49859 1.01519 1.22306 0.87126 0.99687 0.98239 1.21980 1.00921 0.94313 0.88864 1.62275 1.08727 1.51453 1.04022 1.19692 0.96974 0.91741 0.84703 1.21120 0.92350 1.35293 1.05883 0.92007 1.24991 0.98114 0.95407 0.96097 1.69949 1.34902 1.37429 1.11543 0.86565 0.85251 0.78233 0.77370 1.20293 1.21367 1.20204 1.22067 0.90958 0.98567 0.95649 1.22143 0.98516 0.95696 0.90169 0.92540 0.92839 0.87134 0.91592 0.90655 0.89439 0.88876 0.87315 0.90222 0.94239 0.94303 0.91339 0.95292 0.89641 0.99061 0.95236 0.92870 0.95095 0.90977 0.91061 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 11.45 101.05 1.16 1.10 16 2 O -0.14 -1.25 10.84 -11.47 -0.12 -1.37 16 3 N -0.49 -4.77 3.36 -67.07 -0.23 -5.00 16 4 C 0.09 0.62 10.82 59.85 0.65 1.27 16 5 C 0.53 6.21 7.76 -10.98 -0.09 6.13 16 6 O -0.52 -7.57 15.56 5.55 0.09 -7.48 16 7 C -0.13 -1.46 4.94 -27.88 -0.14 -1.60 16 8 C 0.07 0.92 4.25 -3.83 -0.02 0.90 16 9 N -0.54 -8.14 4.71 -234.47 -1.10 -9.24 16 10 C 0.05 0.86 5.41 -3.77 -0.02 0.84 16 11 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 12 N -0.54 -11.87 4.70 -235.91 -1.11 -12.98 16 13 C 0.19 5.12 4.72 -4.98 -0.02 5.09 16 14 C -0.51 -14.29 8.47 -34.44 -0.29 -14.58 16 15 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 18 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 23 C 0.06 0.99 5.61 -3.76 -0.02 0.96 16 24 H 0.06 0.36 7.15 -51.93 -0.37 -0.01 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.67 7.42 -51.93 -0.39 0.28 16 30 H 0.09 0.94 5.50 -51.93 -0.29 0.66 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.05 7.98 -51.93 -0.41 0.63 16 33 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.91 6.34 -51.93 -0.33 0.58 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.78 6.79 -51.93 -0.35 1.42 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 39 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 43 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -32.46 353.50 -7.91 -40.37 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -7.55 Total: -4.04 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 1.07 Total: 3.93 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -1.70 Total: -53.31 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.04 Total: -8.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.46 -7.91 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808742164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.196 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds