Wall clock time and date at job start Tue Mar 31 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.41605 * 113.99811 * 2 1 4 4 C 1.46499 * 119.99788 * 270.00315 * 3 2 1 5 5 C 1.34777 * 120.00013 * 89.99803 * 3 2 1 6 6 O 1.21283 * 119.99750 * 179.97438 * 5 3 2 7 7 C 1.50702 * 119.99928 * 0.27990 * 5 3 2 8 8 C 1.52996 * 109.47159 * 179.72352 * 7 5 3 9 9 N 1.46896 * 109.47255 * 179.97438 * 8 7 5 10 10 C 1.46948 * 111.00183 * 293.79792 * 9 8 7 11 11 C 1.53049 * 109.36764 * 176.80851 * 10 9 8 12 12 N 1.46961 * 109.36177 * 58.40434 * 11 10 9 13 13 C 1.46896 * 111.00056 * 176.81126 * 12 11 10 14 14 C 1.50700 * 109.47199 * 293.79854 * 13 12 11 15 15 H 1.07996 * 119.99760 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99979 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00198 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99973 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47187 * 60.00238 * 18 16 14 20 20 H 1.48499 * 109.47134 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47163 * 299.99945 * 18 16 14 22 22 C 1.46956 * 110.87704 * 300.67780 * 12 11 10 23 23 C 1.46963 * 111.00029 * 169.99612 * 9 8 7 24 24 H 1.08995 * 109.47077 * 299.99850 * 1 2 3 25 25 H 1.09003 * 109.47302 * 59.99972 * 1 2 3 26 26 H 1.09006 * 109.46826 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47189 * 269.99593 * 4 3 2 28 28 H 1.09001 * 109.47567 * 29.99546 * 4 3 2 29 29 H 1.09005 * 109.47076 * 150.00052 * 4 3 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 7 5 3 31 31 H 1.08994 * 109.46990 * 59.72065 * 7 5 3 32 32 H 1.09004 * 109.47066 * 299.99797 * 8 7 5 33 33 H 1.09000 * 109.47234 * 59.99288 * 8 7 5 34 34 H 1.08999 * 109.48998 * 296.77780 * 10 9 8 35 35 H 1.09003 * 109.49079 * 56.83983 * 10 9 8 36 36 H 1.09000 * 109.49067 * 298.43821 * 11 10 9 37 37 H 1.09001 * 109.49268 * 178.36774 * 11 10 9 38 38 H 1.09003 * 109.47316 * 53.79820 * 13 12 11 39 39 H 1.08998 * 109.47120 * 173.79378 * 13 12 11 40 40 H 0.96996 * 120.00179 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.49195 * 299.35522 * 22 12 11 42 42 H 1.09000 * 109.50588 * 179.29776 * 22 12 11 43 43 H 1.09001 * 109.48867 * 303.15880 * 23 9 8 44 44 H 1.09000 * 109.48524 * 63.22347 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3027 1.9628 -1.2687 5 6 2.2790 1.9093 1.1672 6 8 2.7727 3.0171 1.1671 7 6 1.9783 1.2183 2.4723 8 6 2.3877 2.1244 3.6352 9 7 2.0941 1.4511 4.9073 10 6 0.6460 1.2832 5.0924 11 6 0.3861 0.5094 6.3870 12 7 0.9774 1.2387 7.5176 13 6 0.6838 0.5654 8.7897 14 6 -0.7971 0.6290 9.0616 15 1 -1.4544 1.1200 8.3594 16 6 -1.3129 0.0594 10.2064 17 7 -0.5125 -0.5390 11.0613 18 14 -3.1486 0.1375 10.5430 19 1 -3.8827 -0.5390 9.4436 20 1 -3.4455 -0.5430 11.8291 21 1 -3.5770 1.5570 10.6243 22 6 2.4256 1.4066 7.3326 23 6 2.6855 2.1804 6.0379 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.3155 1.7109 -1.5834 28 1 1.5938 1.6336 -2.0284 29 1 2.2207 3.0419 -1.1384 30 1 0.9106 1.0077 2.5343 31 1 2.5367 0.2839 2.5257 32 1 3.4554 2.3350 3.5732 33 1 1.8293 3.0589 3.5817 34 1 0.1711 2.2624 5.1524 35 1 0.2333 0.7297 4.2488 36 1 0.8379 -0.4801 6.3163 37 1 -0.6883 0.4088 6.5412 38 1 0.9979 -0.4767 8.7304 39 1 1.2230 1.0619 9.5965 40 1 -0.8753 -0.9394 11.8668 41 1 2.9005 0.4273 7.2725 42 1 2.8385 1.9599 8.1760 43 1 3.7599 2.2809 5.8837 44 1 2.2337 3.1698 6.1087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808742164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:13 Heat of formation + Delta-G solvation = -36.315082 kcal Electronic energy + Delta-G solvation = -23059.986521 eV Core-core repulsion = 19628.007182 eV Total energy + Delta-G solvation = -3431.979339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.10597 -40.07250 -38.45082 -36.89445 -34.68985 -34.04874 -32.60155 -31.75967 -29.71323 -28.31088 -27.45098 -26.23689 -24.66198 -23.66949 -22.78782 -21.25602 -20.63289 -18.81271 -18.46191 -17.80094 -17.41131 -17.13916 -16.43195 -16.30845 -15.83878 -15.64724 -15.53445 -15.32569 -15.27328 -15.08700 -14.50548 -14.39494 -14.01102 -13.67641 -13.49496 -13.42040 -13.09392 -12.94563 -12.73176 -12.65026 -12.52150 -12.23848 -12.18792 -12.08520 -11.81979 -11.66308 -11.41278 -11.18221 -10.97181 -10.60643 -10.14711 -9.37197 -9.01842 -8.19842 -6.30615 0.84325 1.35409 1.41700 1.45331 1.53184 2.40929 2.62850 3.12114 3.21736 3.31181 3.79733 3.95207 4.03809 4.15454 4.21014 4.35169 4.35839 4.38942 4.41861 4.45153 4.49481 4.52669 4.56737 4.69218 4.78821 4.81454 4.83086 4.89377 4.93577 5.00033 5.04292 5.07226 5.23694 5.28736 5.30302 5.64112 5.99151 6.02393 6.08656 6.27489 6.35768 6.62960 6.85226 6.89632 7.39232 8.91315 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.003133 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.381037 B = 8935.168995 C = 9692.209616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 O -0.150 6.150 3 N -0.486 5.486 4 C 0.081 3.919 5 C 0.526 3.474 6 O -0.557 6.557 7 C -0.124 4.124 8 C 0.077 3.923 9 N -0.544 5.544 10 C 0.066 3.934 11 C 0.069 3.931 12 N -0.548 5.548 13 C 0.209 3.791 14 C -0.524 4.524 15 H 0.064 0.936 16 C 0.001 3.999 17 N -0.936 5.936 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.056 3.944 23 C 0.070 3.930 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.131 0.869 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.100 0.900 36 H 0.019 0.981 37 H 0.070 0.930 38 H -0.039 1.039 39 H 0.002 0.998 40 H 0.265 0.735 41 H 0.024 0.976 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 2.203 -25.311 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 O -0.154 6.154 3 N -0.265 5.265 4 C -0.059 4.059 5 C 0.317 3.683 6 O -0.436 6.436 7 C -0.164 4.164 8 C -0.051 4.051 9 N -0.269 5.269 10 C -0.062 4.062 11 C -0.059 4.059 12 N -0.273 5.273 13 C 0.083 3.917 14 C -0.563 4.563 15 H 0.082 0.918 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.073 4.073 23 C -0.058 4.058 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.149 0.851 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.118 0.882 36 H 0.037 0.963 37 H 0.089 0.911 38 H -0.022 1.022 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.225 2.525 -25.170 25.501 hybrid contribution -0.983 -0.224 0.738 1.249 sum 2.242 2.301 -24.432 24.642 Atomic orbital electron populations 1.23655 0.79738 1.05781 1.02022 1.90659 1.22009 1.05831 1.96901 1.50068 1.58711 1.10668 1.07080 1.22059 1.02752 0.97585 0.83472 1.21004 0.76912 0.84726 0.85694 1.90743 1.45667 1.20430 1.86792 1.21545 1.04799 1.00608 0.89442 1.21717 1.01723 0.94298 0.87324 1.62131 1.12394 1.50190 1.02152 1.22193 0.87864 0.99205 0.96953 1.21981 0.99691 0.94389 0.89865 1.62216 1.11084 1.50903 1.03078 1.19339 0.96123 0.89890 0.86338 1.21423 0.93161 1.35439 1.06238 0.91793 1.25947 1.03354 0.94713 0.95708 1.70087 1.37255 1.38193 1.12070 0.85410 0.78922 0.78597 0.77537 1.18913 1.20904 1.19401 1.22144 0.88792 0.98712 0.97660 1.22071 1.00149 0.94739 0.88801 0.92755 0.91666 0.85119 0.91058 0.88184 0.90029 0.87631 0.86863 0.90153 0.94881 0.94725 0.88217 0.96294 0.91145 1.02169 0.97979 0.92656 0.95816 0.91104 0.88515 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 11.45 113.37 1.30 1.16 16 2 O -0.15 -2.31 10.84 -38.80 -0.42 -2.73 16 3 N -0.49 -8.56 3.36 -484.51 -1.63 -10.19 16 4 C 0.08 1.02 10.82 127.77 1.38 2.40 16 5 C 0.53 11.54 7.76 87.66 0.68 12.22 16 6 O -0.56 -15.63 15.56 -3.04 -0.05 -15.67 16 7 C -0.12 -2.49 4.94 29.85 0.15 -2.34 16 8 C 0.08 1.87 4.25 86.30 0.37 2.24 16 9 N -0.54 -15.43 4.71 -895.74 -4.22 -19.65 16 10 C 0.07 1.97 5.41 86.31 0.47 2.43 16 11 C 0.07 2.72 5.43 86.31 0.47 3.18 16 12 N -0.55 -24.56 4.70 -900.29 -4.23 -28.79 16 13 C 0.21 11.49 4.72 85.56 0.40 11.90 16 14 C -0.52 -30.05 8.47 25.60 0.22 -29.83 16 15 H 0.06 3.56 7.13 -2.91 -0.02 3.54 16 16 C 0.00 0.04 5.46 84.65 0.46 0.50 16 17 N -0.94 -56.97 13.29 21.45 0.28 -56.68 16 18 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 C 0.06 2.09 5.61 86.31 0.48 2.58 16 23 C 0.07 2.13 5.61 86.31 0.48 2.61 16 24 H 0.05 0.54 7.15 -2.39 -0.02 0.53 16 25 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 1.15 7.42 -2.38 -0.02 1.13 16 30 H 0.11 1.83 5.50 -2.38 -0.01 1.82 16 31 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 1.96 7.98 -2.38 -0.02 1.94 16 33 H 0.03 0.86 8.08 -2.39 -0.02 0.84 16 34 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 2.37 6.34 -2.39 -0.02 2.35 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 2.94 6.79 -2.39 -0.02 2.93 16 38 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 39 H 0.00 0.12 8.03 -2.39 -0.02 0.10 16 40 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 43 H 0.10 2.46 8.07 -2.39 -0.02 2.44 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -70.86 353.50 -0.41 -71.28 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 0.96 Total: 7.12 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 6.86 Total: 9.06 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -9.79 Total: -115.31 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.47 Total: -18.40 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -70.86 -0.41 -71.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808742164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.961 kcal (2) G-P(sol) polarization free energy of solvation -70.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds