Wall clock time and date at job start Tue Mar 31 2020 02:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.50707 * 2 1 4 4 O 1.43369 * 109.63165 * 239.67888 * 2 1 3 5 5 C 1.44194 * 107.28681 * 240.78795 * 4 2 1 6 6 C 1.54913 * 103.07726 * 21.44213 * 5 4 2 7 7 H 1.08997 * 110.98016 * 82.54249 * 6 5 4 8 8 C 1.53002 * 111.00572 * 206.31409 * 6 5 4 9 9 C 1.53007 * 109.46668 * 181.86272 * 8 6 5 10 10 N 1.46900 * 109.46599 * 179.97438 * 9 8 6 11 11 C 1.48524 * 111.00071 * 52.61228 * 10 9 8 12 12 C 1.54938 * 103.23258 * 159.71841 * 11 10 9 13 13 C 1.54603 * 102.91783 * 322.58310 * 12 11 10 14 14 O 1.42906 * 110.30806 * 263.04348 * 13 12 11 15 15 C 1.50691 * 110.31161 * 140.87287 * 13 12 11 16 16 H 1.08007 * 119.99760 * 3.71830 * 15 13 12 17 17 C 1.37873 * 120.00148 * 183.71889 * 15 13 12 18 18 N 1.31522 * 120.00247 * 186.05072 * 17 15 13 19 19 Si 1.86799 * 120.00252 * 6.04936 * 17 15 13 20 20 H 1.48496 * 109.47119 * 84.76818 * 19 17 15 21 21 H 1.48494 * 109.47353 * 204.77490 * 19 17 15 22 22 H 1.48507 * 109.46706 * 324.77287 * 19 17 15 23 23 C 1.47906 * 110.99260 * 170.00304 * 10 9 8 24 24 O 1.43755 * 109.62693 * 120.31606 * 2 1 3 25 25 H 1.08997 * 109.47233 * 299.68240 * 1 2 3 26 26 H 1.08998 * 109.46832 * 59.68648 * 1 2 3 27 27 H 1.09002 * 109.47366 * 179.68102 * 1 2 3 28 28 H 1.08998 * 109.46978 * 180.31472 * 3 2 1 29 29 H 1.09005 * 109.46848 * 300.31652 * 3 2 1 30 30 H 1.08997 * 109.46876 * 60.31623 * 3 2 1 31 31 H 1.08996 * 110.69819 * 263.03939 * 5 4 2 32 32 H 1.09002 * 110.68808 * 139.83443 * 5 4 2 33 33 H 1.08996 * 109.47416 * 301.86013 * 8 6 5 34 34 H 1.08999 * 109.47387 * 61.86619 * 8 6 5 35 35 H 1.08992 * 109.47652 * 300.00299 * 9 8 6 36 36 H 1.09009 * 109.46848 * 60.00046 * 9 8 6 37 37 H 1.09004 * 110.66749 * 278.14760 * 11 10 9 38 38 H 1.09004 * 110.67345 * 41.27592 * 11 10 9 39 39 H 1.09000 * 110.72543 * 204.22966 * 12 11 10 40 40 H 1.08999 * 110.87951 * 81.00308 * 12 11 10 41 41 H 0.96698 * 113.99565 * 295.71283 * 14 13 12 42 42 H 0.96997 * 120.00106 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.92172 * 333.51085 * 23 10 9 44 44 H 1.09003 * 109.91688 * 94.61103 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0117 -0.6817 -1.1656 5 6 2.7885 -1.8088 -0.7125 6 6 2.2652 -2.0391 0.7273 7 1 1.3457 -2.6243 0.7194 8 6 3.3304 -2.7093 1.5974 9 6 2.7619 -2.9619 2.9954 10 7 3.7845 -3.6059 3.8306 11 6 5.0522 -2.8324 3.8111 12 6 5.7836 -3.3181 5.0878 13 6 4.6304 -3.4875 6.1034 14 8 4.5246 -2.3279 6.9318 15 6 4.8529 -4.7159 6.9474 16 1 5.7568 -5.2954 6.8298 17 6 3.9027 -5.1002 7.8696 18 7 4.1473 -6.1002 8.6881 19 14 2.2680 -4.2005 7.9566 20 1 1.3324 -4.7763 6.9575 21 1 1.6925 -4.3499 9.3173 22 1 2.4796 -2.7600 7.6640 23 6 3.3608 -3.6502 5.2470 24 8 2.0129 -0.6835 1.1689 25 1 -0.3633 0.5089 0.8928 26 1 -0.3633 0.5187 -0.8872 27 1 -0.3634 -1.0277 -0.0057 28 1 3.1309 1.4415 -0.0056 29 1 1.6732 1.9579 -0.8872 30 1 1.6825 1.9546 0.8928 31 1 3.8509 -1.5652 -0.7019 32 1 2.5988 -2.6828 -1.3356 33 1 3.6230 -3.6579 1.1474 34 1 4.2014 -2.0582 1.6716 35 1 2.4692 -2.0133 3.4454 36 1 1.8908 -3.6130 2.9212 37 1 5.6342 -3.0700 2.9206 38 1 4.8512 -1.7625 3.8664 39 1 6.4950 -2.5682 5.4336 40 1 6.2842 -4.2700 4.9104 41 1 5.2962 -2.1745 7.4941 42 1 3.4790 -6.3702 9.3372 43 1 2.6671 -2.8351 5.4528 44 1 2.8842 -4.6065 5.4623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852205548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:34 Heat of formation + Delta-G solvation = -156.002094 kcal Electronic energy + Delta-G solvation = -23877.770542 eV Core-core repulsion = 20408.308433 eV Total energy + Delta-G solvation = -3469.462109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.65972 -40.36878 -37.25837 -36.06094 -34.80379 -34.49721 -32.84623 -30.90604 -30.11266 -28.44435 -28.17108 -26.01134 -24.42314 -22.87572 -22.15697 -21.71472 -21.18960 -19.09153 -18.53704 -17.45316 -17.19640 -17.06709 -16.46437 -16.31315 -15.97465 -15.58655 -15.16884 -14.97109 -14.81107 -14.55140 -14.28995 -14.08259 -13.86921 -13.62753 -13.49393 -13.31263 -13.15343 -13.09065 -12.90111 -12.80178 -12.65080 -12.30347 -12.18629 -12.14188 -11.90888 -11.84884 -11.67909 -11.12214 -10.98288 -10.80350 -10.65461 -10.25016 -9.39429 -8.38221 -6.49011 1.29974 1.36070 1.58462 2.34416 2.36744 2.88763 2.94350 2.98406 3.48324 3.63525 3.80105 3.83489 3.91573 3.97087 4.05858 4.16448 4.22030 4.27299 4.35581 4.41509 4.50321 4.61678 4.61829 4.63515 4.68845 4.71878 4.74754 4.79201 4.88539 4.93534 5.03783 5.09123 5.12184 5.15409 5.20891 5.30955 5.35943 5.58636 5.88743 6.08986 6.12699 6.13627 6.61719 7.16445 7.32472 8.76439 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.027651 B = 0.003877 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.365477 B = 7220.952425 C = 7508.907378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.238 3.762 3 C -0.153 4.153 4 O -0.395 6.395 5 C 0.027 3.973 6 C 0.048 3.952 7 H 0.090 0.910 8 C -0.099 4.099 9 C 0.048 3.952 10 N -0.517 5.517 11 C 0.045 3.955 12 C -0.133 4.133 13 C 0.206 3.794 14 O -0.586 6.586 15 C -0.544 4.544 16 H 0.042 0.958 17 C 0.037 3.963 18 N -0.936 5.936 19 Si 0.928 3.072 20 H -0.277 1.277 21 H -0.300 1.300 22 H -0.225 1.225 23 C 0.049 3.951 24 O -0.388 6.388 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.376 0.624 42 H 0.267 0.733 43 H 0.030 0.970 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.537 12.687 -20.422 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.162 3.838 3 C -0.210 4.210 4 O -0.316 6.316 5 C -0.049 4.049 6 C -0.010 4.010 7 H 0.108 0.892 8 C -0.136 4.136 9 C -0.080 4.080 10 N -0.242 5.242 11 C -0.082 4.082 12 C -0.171 4.171 13 C 0.166 3.834 14 O -0.394 6.394 15 C -0.581 4.581 16 H 0.060 0.940 17 C -0.163 4.163 18 N -0.575 5.575 19 Si 0.754 3.246 20 H -0.203 1.203 21 H -0.227 1.227 22 H -0.148 1.148 23 C -0.079 4.079 24 O -0.310 6.310 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.224 0.776 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.118 12.281 -20.805 24.695 hybrid contribution -0.395 0.355 1.395 1.492 sum -5.513 12.636 -19.410 23.808 Atomic orbital electron populations 1.22369 0.92982 1.03356 1.03934 1.23615 0.93755 0.91895 0.74534 1.22085 1.02123 0.92910 1.03919 1.88848 1.69990 1.42738 1.30055 1.24340 0.96712 0.89850 0.93962 1.24028 0.99260 0.83989 0.93685 0.89169 1.21581 0.97185 1.01781 0.93103 1.22301 0.95066 0.96673 0.93982 1.64846 1.04429 1.48350 1.06581 1.23202 0.90882 0.95326 0.98787 1.22996 0.97624 1.01112 0.95343 1.19813 0.92049 0.83445 0.88121 1.86425 1.46613 1.47635 1.58685 1.21658 1.05461 1.10681 1.20341 0.93962 1.25700 1.01842 0.94695 0.94020 1.70057 1.36455 1.29723 1.21254 0.86207 0.79704 0.82619 0.76109 1.20328 1.22712 1.14813 1.22988 0.97077 0.99244 0.88556 1.89310 1.86162 1.22769 1.32762 0.90374 0.89604 0.92150 0.92072 0.89236 0.90394 0.89838 0.85966 0.87467 0.90448 0.95736 0.90794 0.87982 0.93863 0.90213 0.91656 0.77551 0.92408 0.95142 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.19 71.98 0.66 -2.19 16 2 C 0.24 4.81 1.47 30.60 0.04 4.85 16 3 C -0.15 -2.62 9.24 71.98 0.66 -1.95 16 4 O -0.39 -8.10 10.87 -126.22 -1.37 -9.48 16 5 C 0.03 0.45 7.54 72.64 0.55 1.00 16 6 C 0.05 0.95 3.45 31.25 0.11 1.06 16 7 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 8 C -0.10 -2.12 4.66 30.60 0.14 -1.98 16 9 C 0.05 1.42 4.97 86.31 0.43 1.85 16 10 N -0.52 -18.72 5.40 -882.99 -4.76 -23.49 16 11 C 0.05 1.46 5.10 86.65 0.44 1.90 16 12 C -0.13 -5.05 6.34 31.80 0.20 -4.85 16 13 C 0.21 9.50 0.84 -10.66 -0.01 9.49 16 14 O -0.59 -26.13 10.45 -148.98 -1.56 -27.69 16 15 C -0.54 -30.59 8.67 25.60 0.22 -30.37 16 16 H 0.04 2.61 7.82 -2.91 -0.02 2.59 16 17 C 0.04 2.18 5.39 84.65 0.46 2.63 16 18 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 19 Si 0.93 46.18 23.85 68.60 1.64 47.82 16 20 H -0.28 -13.39 6.94 99.48 0.69 -12.70 16 21 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 22 H -0.23 -10.92 5.42 99.48 0.54 -10.38 16 23 C 0.05 2.20 4.11 86.45 0.36 2.55 16 24 O -0.39 -9.39 10.55 -126.22 -1.33 -10.73 16 25 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.27 8.04 -2.39 -0.02 1.25 16 32 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.67 6.80 -2.39 -0.02 1.65 16 35 H 0.02 0.80 7.70 -2.39 -0.02 0.79 16 36 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.10 2.68 7.67 -2.39 -0.02 2.66 16 38 H 0.04 1.37 8.00 -2.38 -0.02 1.36 16 39 H 0.08 2.69 8.08 -2.39 -0.02 2.67 16 40 H 0.06 2.63 7.70 -2.39 -0.02 2.61 16 41 H 0.38 14.57 9.07 -74.06 -0.67 13.90 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.03 1.37 6.53 -2.39 -0.02 1.35 16 44 H 0.06 3.11 5.80 -2.39 -0.01 3.10 16 Total: -1.00 -69.15 338.43 -2.70 -71.85 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.12 Total: 25.66 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.27 Total: -16.01 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -4.47 Total: -81.43 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -4.26 Total: -47.89 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.64 Total: 47.82 kcal Total: -69.15 -2.70 -71.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852205548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.149 kcal (2) G-P(sol) polarization free energy of solvation -69.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds